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The map label for this gene is recR

Identifier: 78779491

GI number: 78779491

Start: 1021002

End: 1021601

Strand: Reverse

Name: recR

Synonym: PMT9312_1108

Alternate gene names: 78779491

Gene position: 1021601-1021002 (Counterclockwise)

Preceding gene: 78779493

Following gene: 78779490

Centisome position: 59.77

GC content: 35.33

Gene sequence:

>600_bases
TTGATTACTTATACCAAACCGCTTTCAAAATTAATTGGTCATTTTGAGAAATTCCCAGGGATTGGTCCAAGAACAGCGCA
ACGATTAGCCCTGTTTGTTTTAAAACAACCTGAAAGTACAATAAGAGATTTTTCAAAGGCTCTGTTAGAAGCACATAGTA
ATGTTGGTCGTTGCAAAAAATGTTTCAATTTTACTTCAGAAGATGAATGTGAAATTTGTAAAAATACTGAAAGAAATCAA
AAACTAATCTGTGTAGTAGCAGAAACTAAAGATTTGCTTGCTTTGGAGCGCGCCAGAGAATTTAAAGGTGTTTACCATGT
TATTGGTGGTTTAATATCTCCAATGGATTCTGTTGGTCCCGAACTCTTAGAAATAAGAAGTTTGGTAGAAAGAGTTAGTA
AATCTGAAATAGATGAGATCATATTGGCATTGACCCCCAGTGTTGAGGGAGATACAACAAGTCTTTATATTGGAAAATTG
TTAGCTCCTTTTACTAAAGTTACGAGGATTGCATATGGCCTACCAATGGGCAGTGAACTTGAATATGTAGATGAAGTTAC
ACTTGCAAGGGCGTTAGAAGGAAGAACAAAACTTAATTAG

Upstream 100 bases:

>100_bases
GTTTGAAATTACTAATTAAAAACATAATAAGACATTAAAAGCAAACAATTATGGCAATTCATAATTTTGCGTCTAAATTA
TCCCTAGAAATAGTTTAATT

Downstream 100 bases:

>100_bases
ACAATGAGAGACAATAATCTAATCAAGAAAGAAAAAATCTTAAGACTTCCCTCTTGGATTAAATTTCCTATTAGTAAAGC
TTCAGAATTCGAAAAAATAC

Product: recombination protein RecR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 199; Mature: 199

Protein sequence:

>199_residues
MITYTKPLSKLIGHFEKFPGIGPRTAQRLALFVLKQPESTIRDFSKALLEAHSNVGRCKKCFNFTSEDECEICKNTERNQ
KLICVVAETKDLLALERAREFKGVYHVIGGLISPMDSVGPELLEIRSLVERVSKSEIDEIILALTPSVEGDTTSLYIGKL
LAPFTKVTRIAYGLPMGSELEYVDEVTLARALEGRTKLN

Sequences:

>Translated_199_residues
MITYTKPLSKLIGHFEKFPGIGPRTAQRLALFVLKQPESTIRDFSKALLEAHSNVGRCKKCFNFTSEDECEICKNTERNQ
KLICVVAETKDLLALERAREFKGVYHVIGGLISPMDSVGPELLEIRSLVERVSKSEIDEIILALTPSVEGDTTSLYIGKL
LAPFTKVTRIAYGLPMGSELEYVDEVTLARALEGRTKLN
>Mature_199_residues
MITYTKPLSKLIGHFEKFPGIGPRTAQRLALFVLKQPESTIRDFSKALLEAHSNVGRCKKCFNFTSEDECEICKNTERNQ
KLICVVAETKDLLALERAREFKGVYHVIGGLISPMDSVGPELLEIRSLVERVSKSEIDEIILALTPSVEGDTTSLYIGKL
LAPFTKVTRIAYGLPMGSELEYVDEVTLARALEGRTKLN

Specific function: May play a role in DNA repair. It seems to be involved in an recBC-independent recombinational process of DNA repair. It may act with recF and recO [H]

COG id: COG0353

COG function: function code L; Recombinational DNA repair protein (RecF pathway)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Toprim domain [H]

Homologues:

Organism=Escherichia coli, GI1786678, Length=197, Percent_Identity=39.5939086294416, Blast_Score=155, Evalue=2e-39,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000093
- InterPro:   IPR006171
- InterPro:   IPR015967 [H]

Pfam domain/function: PF02132 RecR; PF01751 Toprim [H]

EC number: NA

Molecular weight: Translated: 22190; Mature: 22190

Theoretical pI: Translated: 7.35; Mature: 7.35

Prosite motif: PS01300 RECR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MITYTKPLSKLIGHFEKFPGIGPRTAQRLALFVLKQPESTIRDFSKALLEAHSNVGRCKK
CCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHH
CFNFTSEDECEICKNTERNQKLICVVAETKDLLALERAREFKGVYHVIGGLISPMDSVGP
HHCCCCCCHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCH
ELLEIRSLVERVSKSEIDEIILALTPSVEGDTTSLYIGKLLAPFTKVTRIAYGLPMGSEL
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCH
EYVDEVTLARALEGRTKLN
HHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MITYTKPLSKLIGHFEKFPGIGPRTAQRLALFVLKQPESTIRDFSKALLEAHSNVGRCKK
CCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHH
CFNFTSEDECEICKNTERNQKLICVVAETKDLLALERAREFKGVYHVIGGLISPMDSVGP
HHCCCCCCHHHHHHCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCH
ELLEIRSLVERVSKSEIDEIILALTPSVEGDTTSLYIGKLLAPFTKVTRIAYGLPMGSEL
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCH
EYVDEVTLARALEGRTKLN
HHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA