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The map label for this gene is 78779275

Identifier: 78779275

GI number: 78779275

Start: 822855

End: 823319

Strand: Reverse

Name: 78779275

Synonym: PMT9312_0891

Alternate gene names: NA

Gene position: 823319-822855 (Counterclockwise)

Preceding gene: 78779276

Following gene: 78779274

Centisome position: 48.17

GC content: 28.39

Gene sequence:

>465_bases
TTGAAAGGCAGACCAATAACAAAAAAAGATCTTTCAGAAATTACTAATTCTGATATAAATTCAATAAATGATGCAATTAA
AGATCTTAAAAATAAATACTCTGATCAAAAATCAGCACTTGAATTAAATGAAGTAAATAATAGTTTTTGTCTCGAACTCA
AATCTAGTCTTAATGATTTTGTAGAGGACTTACTTCCTTCAGAGTTGAAAACATCAGAATTAAGGACATTAGCAACTATT
GCTATCAAAAAAAAGATCTTGCAATCTGATCTTATACTTCTTAGAGGCTCAGGAGCTTATGATCATATTAAAGAATTATT
AGAAAAGAAATTCATTGTAAAACGTAGGCAAAAAGATGGTAGATCATATTGGTTATCTTTATCAGAAAAGTTTTTTCAAA
CTTTTGCTGTGAGTAATGACTATCTCTCAAAAATAGGAACCCGCAATAATAAGCAGCAACAATAA

Upstream 100 bases:

>100_bases
CTTAGGAAAGATTTCGGTAATAACAATTATTAAATCTGATCTAATTAATAAGCAACTATCTGATATAGATCTAGTTACCA
GAATTGAAGCTGTCCTTTAT

Downstream 100 bases:

>100_bases
GTAAATGTTAGAATAATCTAAATTACGAAATAATAATGTTATCTGAGATTTTCGCAGTATTAGGCCAAACTTTATCTATT
TATTCTTTCATATTAATTAT

Product: condensin subunit ScpB

Products: NA

Alternate protein names: Segregation And Condensation Protein B; Condensin Subunit ScpB; Transcriptional Regulator; Transcription Regulator; YpuH-Like Family Transcriptional Regulator; Chromosome Segregation/Condensation Protein B; Transcription Regulator YpuH-Like Family

Number of amino acids: Translated: 154; Mature: 154

Protein sequence:

>154_residues
MKGRPITKKDLSEITNSDINSINDAIKDLKNKYSDQKSALELNEVNNSFCLELKSSLNDFVEDLLPSELKTSELRTLATI
AIKKKILQSDLILLRGSGAYDHIKELLEKKFIVKRRQKDGRSYWLSLSEKFFQTFAVSNDYLSKIGTRNNKQQQ

Sequences:

>Translated_154_residues
MKGRPITKKDLSEITNSDINSINDAIKDLKNKYSDQKSALELNEVNNSFCLELKSSLNDFVEDLLPSELKTSELRTLATI
AIKKKILQSDLILLRGSGAYDHIKELLEKKFIVKRRQKDGRSYWLSLSEKFFQTFAVSNDYLSKIGTRNNKQQQ
>Mature_154_residues
MKGRPITKKDLSEITNSDINSINDAIKDLKNKYSDQKSALELNEVNNSFCLELKSSLNDFVEDLLPSELKTSELRTLATI
AIKKKILQSDLILLRGSGAYDHIKELLEKKFIVKRRQKDGRSYWLSLSEKFFQTFAVSNDYLSKIGTRNNKQQQ

Specific function: Unknown

COG id: COG1386

COG function: function code K; Predicted transcriptional regulator containing the HTH domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 17702; Mature: 17702

Theoretical pI: Translated: 9.94; Mature: 9.94

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKGRPITKKDLSEITNSDINSINDAIKDLKNKYSDQKSALELNEVNNSFCLELKSSLNDF
CCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCHHHHHHHHHHHHH
VEDLLPSELKTSELRTLATIAIKKKILQSDLILLRGSGAYDHIKELLEKKFIVKRRQKDG
HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCHHHHHHHHHHHHHHHHHHHCC
RSYWLSLSEKFFQTFAVSNDYLSKIGTRNNKQQQ
HHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MKGRPITKKDLSEITNSDINSINDAIKDLKNKYSDQKSALELNEVNNSFCLELKSSLNDF
CCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCHHHHHHHHHHHHH
VEDLLPSELKTSELRTLATIAIKKKILQSDLILLRGSGAYDHIKELLEKKFIVKRRQKDG
HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCHHHHHHHHHHHHHHHHHHHCC
RSYWLSLSEKFFQTFAVSNDYLSKIGTRNNKQQQ
HHHHHHHHHHHHHHHHCCHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA