Click here to switch to the map view.

The map label for this gene is crtI [H]

Identifier: 78778730

GI number: 78778730

Start: 331468

End: 332997

Strand: Reverse

Name: crtI [H]

Synonym: PMT9312_0345

Alternate gene names: 78778730

Gene position: 332997-331468 (Counterclockwise)

Preceding gene: 78778732

Following gene: 78778728

Centisome position: 19.48

GC content: 33.4

Gene sequence:

>1530_bases
ATGCAAAAATATGATGTCGTAATAATCGGTAGTGGCATAGGTGGTTTATGTTGTGGTTCAATTCTATCTTTATCAGGTAA
AAAAGTTCTTATCTGTGAAGCACATTCTCAACCTGGAGGTGTTGCTCACAGTTTCAAAAGGAATGGCTACACCTTTGAGT
CTGGTCCTTCACTATGGAGTGGGATAGGTAAATGGCCAACAACTAATCCCTTAGGGCAAATTCTTAAATTACTTGATGAA
GAAATTGAACTATTTCAATATAAAGGTTGGCAAGTTATAGTCCCAGAAGGCAATTTTAATCTTGATGTAGGGGAAGAACC
CTTTAAACAAACAATAAAAAATTTAAGAGGAGACAAATCTGTCAAAGAATGGGAATCATTTATTTCTGGAATAAAACCTC
TTAGCAAAATAATAAATGAGATTCCTTTACTCACGTTTTCTCCTGAATCAATAAATTTCTTAGATCTAATCAATTTAACC
TCAAAATTCTTACCTAATATCAAGCAAATACCAAAAATTAATAAGGGTTTTGGGAATTTAGTAAATAATCACTTAGAAGA
TCCTTTCCTCAGAAATTGGGTTGATTTATTAAGCTTTTTGATAAGTGGTATGTCAATGCATGATACAAATACAGCTGCTA
TGGCTACTTTATTTAACGAATGGTTTGAACCAAATTCCTTCCTTGAATACCCCAAAGGAGGCAGTGAATCTATTGTAAAA
GCCTTAATTAATGGATTAAAAAAAAATGGAGGAGAATTAATACTCTCTTCAAGAGTTAAGACAATAAACTTCAATAAAAA
TTTAGCGGCAGGTATAACCCTTGAGAATGGCTCAAGTTATAGTTGTGAATCTGTTGTAATGAATACTGATGTTTGGAATT
TGAAAAAATTAATTCCACATGAAATCTCAAAAAAATGGAAGACAAAGGCCTTAGATCCTAATAAATGTGATTCTTTCCTT
CATATACATTTAGGTTTTGATGCTGATGGTCTTGAAAATTTGCCAATACATGCAATACATGTTGATGATTGGGAGAAAGG
TATAACCGCAGAAAGAAATATAGCCGTATTTTCAATCCCATCTGTTTTAGATGAAAATATGGCCCCTAAAGGGAAACATG
TTCTTCATGGATATACTCCCGCAAATGAACCATGGAGCATTTGGGAAAACCTAAATCCAAAAGAAGCAGCATATAGAAAT
TTGAAAGAAGATAGATGTTCAATATTCCTTAATGCAGTGCGAAAATTCATCCCTGACATAGATGAAAGGATAAATTTAAA
GATGTTAGGGACCCCAATTACTCATCAAAAATTCACTAATACCCATTGCGGTAGTTACGGTCCAGCATTATCAGCAGCAA
AAGGGCTTTTCCCAGGATGTAAAACTCCAGTAAAAAATTTATTTACTTGCGGTGCAAGTACATTTCCAGGTATTGGAATT
CCTGCTGTTTCAGCAAGCGGAGCTTATGCAGCTGAACAAATTATTGGTAAAAAAGCATTTAAAACTTTACTTAAAAAAAT
AAATTTATAA

Upstream 100 bases:

>100_bases
ATTTTCTTCCTCGCGATTGTACTAAGTATTACAACTTCAACAAATACCTTCGTTTAAAAGTATCTGTTTTTATTCATAAA
AACAGAGTTAATAATATTAA

Downstream 100 bases:

>100_bases
AACCAAGTTCCCTCTTACATAACTCTGTAATTACTTAGTTAAGAAATAAGAATAAAGAGCACAAAAACACTCAATAATGA
TAATCTTTGTCTGAAACATA

Product: phytoene dehydrogenase

Products: NA

Alternate protein names: Phytoene desaturase [H]

Number of amino acids: Translated: 509; Mature: 509

Protein sequence:

>509_residues
MQKYDVVIIGSGIGGLCCGSILSLSGKKVLICEAHSQPGGVAHSFKRNGYTFESGPSLWSGIGKWPTTNPLGQILKLLDE
EIELFQYKGWQVIVPEGNFNLDVGEEPFKQTIKNLRGDKSVKEWESFISGIKPLSKIINEIPLLTFSPESINFLDLINLT
SKFLPNIKQIPKINKGFGNLVNNHLEDPFLRNWVDLLSFLISGMSMHDTNTAAMATLFNEWFEPNSFLEYPKGGSESIVK
ALINGLKKNGGELILSSRVKTINFNKNLAAGITLENGSSYSCESVVMNTDVWNLKKLIPHEISKKWKTKALDPNKCDSFL
HIHLGFDADGLENLPIHAIHVDDWEKGITAERNIAVFSIPSVLDENMAPKGKHVLHGYTPANEPWSIWENLNPKEAAYRN
LKEDRCSIFLNAVRKFIPDIDERINLKMLGTPITHQKFTNTHCGSYGPALSAAKGLFPGCKTPVKNLFTCGASTFPGIGI
PAVSASGAYAAEQIIGKKAFKTLLKKINL

Sequences:

>Translated_509_residues
MQKYDVVIIGSGIGGLCCGSILSLSGKKVLICEAHSQPGGVAHSFKRNGYTFESGPSLWSGIGKWPTTNPLGQILKLLDE
EIELFQYKGWQVIVPEGNFNLDVGEEPFKQTIKNLRGDKSVKEWESFISGIKPLSKIINEIPLLTFSPESINFLDLINLT
SKFLPNIKQIPKINKGFGNLVNNHLEDPFLRNWVDLLSFLISGMSMHDTNTAAMATLFNEWFEPNSFLEYPKGGSESIVK
ALINGLKKNGGELILSSRVKTINFNKNLAAGITLENGSSYSCESVVMNTDVWNLKKLIPHEISKKWKTKALDPNKCDSFL
HIHLGFDADGLENLPIHAIHVDDWEKGITAERNIAVFSIPSVLDENMAPKGKHVLHGYTPANEPWSIWENLNPKEAAYRN
LKEDRCSIFLNAVRKFIPDIDERINLKMLGTPITHQKFTNTHCGSYGPALSAAKGLFPGCKTPVKNLFTCGASTFPGIGI
PAVSASGAYAAEQIIGKKAFKTLLKKINL
>Mature_509_residues
MQKYDVVIIGSGIGGLCCGSILSLSGKKVLICEAHSQPGGVAHSFKRNGYTFESGPSLWSGIGKWPTTNPLGQILKLLDE
EIELFQYKGWQVIVPEGNFNLDVGEEPFKQTIKNLRGDKSVKEWESFISGIKPLSKIINEIPLLTFSPESINFLDLINLT
SKFLPNIKQIPKINKGFGNLVNNHLEDPFLRNWVDLLSFLISGMSMHDTNTAAMATLFNEWFEPNSFLEYPKGGSESIVK
ALINGLKKNGGELILSSRVKTINFNKNLAAGITLENGSSYSCESVVMNTDVWNLKKLIPHEISKKWKTKALDPNKCDSFL
HIHLGFDADGLENLPIHAIHVDDWEKGITAERNIAVFSIPSVLDENMAPKGKHVLHGYTPANEPWSIWENLNPKEAAYRN
LKEDRCSIFLNAVRKFIPDIDERINLKMLGTPITHQKFTNTHCGSYGPALSAAKGLFPGCKTPVKNLFTCGASTFPGIGI
PAVSASGAYAAEQIIGKKAFKTLLKKINL

Specific function: This enzyme converts phytoene into lycopene via the intermediaries of phytofluene, zeta-carotene and neurosporene by the introduction of four double bonds [H]

COG id: COG1233

COG function: function code Q; Phytoene dehydrogenase and related proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the carotenoid/retinoid oxidoreductase family [H]

Homologues:

Organism=Homo sapiens, GI203098013, Length=520, Percent_Identity=22.8846153846154, Blast_Score=67, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002937
- InterPro:   IPR008150
- InterPro:   IPR014105 [H]

Pfam domain/function: PF01593 Amino_oxidase [H]

EC number: NA

Molecular weight: Translated: 56223; Mature: 56223

Theoretical pI: Translated: 8.46; Mature: 8.46

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQKYDVVIIGSGIGGLCCGSILSLSGKKVLICEAHSQPGGVAHSFKRNGYTFESGPSLWS
CCCEEEEEEECCCCHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHCCCCCCCCCCHHHH
GIGKWPTTNPLGQILKLLDEEIELFQYKGWQVIVPEGNFNLDVGEEPFKQTIKNLRGDKS
CCCCCCCCCHHHHHHHHHHHHHHHHEECCCEEEEECCCCCCCCCCHHHHHHHHHHCCCCC
VKEWESFISGIKPLSKIINEIPLLTFSPESINFLDLINLTSKFLPNIKQIPKINKGFGNL
HHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHCCCHHHCCCCCHHHHHH
VNNHLEDPFLRNWVDLLSFLISGMSMHDTNTAAMATLFNEWFEPNSFLEYPKGGSESIVK
HHHHCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHH
ALINGLKKNGGELILSSRVKTINFNKNLAAGITLENGSSYSCESVVMNTDVWNLKKLIPH
HHHHHHHCCCCEEEEECCEEEEECCCCEEEEEEECCCCCCCCCCEEEECCHHHHHHHHHH
EISKKWKTKALDPNKCDSFLHIHLGFDADGLENLPIHAIHVDDWEKGITAERNIAVFSIP
HHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCCCEEEEECCCHHCCCCCCCCEEEEECH
SVLDENMAPKGKHVLHGYTPANEPWSIWENLNPKEAAYRNLKEDRCSIFLNAVRKFIPDI
HHHHCCCCCCCCEEEECCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCH
DERINLKMLGTPITHQKFTNTHCGSYGPALSAAKGLFPGCKTPVKNLFTCGASTFPGIGI
HHCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCC
PAVSASGAYAAEQIIGKKAFKTLLKKINL
CCCCCCCHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MQKYDVVIIGSGIGGLCCGSILSLSGKKVLICEAHSQPGGVAHSFKRNGYTFESGPSLWS
CCCEEEEEEECCCCHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHCCCCCCCCCCHHHH
GIGKWPTTNPLGQILKLLDEEIELFQYKGWQVIVPEGNFNLDVGEEPFKQTIKNLRGDKS
CCCCCCCCCHHHHHHHHHHHHHHHHEECCCEEEEECCCCCCCCCCHHHHHHHHHHCCCCC
VKEWESFISGIKPLSKIINEIPLLTFSPESINFLDLINLTSKFLPNIKQIPKINKGFGNL
HHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHCCCHHHCCCCCHHHHHH
VNNHLEDPFLRNWVDLLSFLISGMSMHDTNTAAMATLFNEWFEPNSFLEYPKGGSESIVK
HHHHCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHH
ALINGLKKNGGELILSSRVKTINFNKNLAAGITLENGSSYSCESVVMNTDVWNLKKLIPH
HHHHHHHCCCCEEEEECCEEEEECCCCEEEEEEECCCCCCCCCCEEEECCHHHHHHHHHH
EISKKWKTKALDPNKCDSFLHIHLGFDADGLENLPIHAIHVDDWEKGITAERNIAVFSIP
HHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCCCEEEEECCCHHCCCCCCCCEEEEECH
SVLDENMAPKGKHVLHGYTPANEPWSIWENLNPKEAAYRNLKEDRCSIFLNAVRKFIPDI
HHHHCCCCCCCCEEEECCCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCH
DERINLKMLGTPITHQKFTNTHCGSYGPALSAAKGLFPGCKTPVKNLFTCGASTFPGIGI
HHCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCC
PAVSASGAYAAEQIIGKKAFKTLLKKINL
CCCCCCCHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 2254247 [H]