| Definition | Thiomicrospira crunogena XCL-2, complete genome. |
|---|---|
| Accession | NC_007520 |
| Length | 2,427,734 |
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The map label for this gene is yeeZ [C]
Identifier: 78484793
GI number: 78484793
Start: 501367
End: 502197
Strand: Reverse
Name: yeeZ [C]
Synonym: Tcr_0448
Alternate gene names: 78484793
Gene position: 502197-501367 (Counterclockwise)
Preceding gene: 78484794
Following gene: 78484791
Centisome position: 20.69
GC content: 45.49
Gene sequence:
>831_bases ATGGCGCGCGTTTTGATTGCAGGGTGTGGCGATATTGGTTGTCGTCTAGGCGCAAACTTAGCAAAAAAAGGACATGAAGT CTTTGGTATGCGGCGGGACGTTTCAAAGATCAGTGCACCTATTCAACCGATTGAAGCCGATTTGTTTGGCCAACTTCCTG AACTTCCCGACCAACTCGATTATGTTTTCTATATTGTTTCGGCCAAAAGCTACAATGATGTCGCTTACTATAAAGCGTAT GTTATGGGGCTAAAACACTTGATTGACGCACTTAAAGATCAACCCATCAAACGCCTGTTCTTCATCTCAAGTTCGTCCGT CTTTTCTCAATCAGAAGGCGAACGCGTTACTGAAGAAAGCCCAACAGAAGGAAAAAACTTTTCCAGCCGCCGCTTACTGG AAGGTGAAGAACTTGCTTTAAATGCCCCTTTTCCGGGCACAGTGGTCCGCTTTGGCGGCATTTACGGGCCTGGGCGAACC TATCTCATTGATTTGGTACTGCAAGGAAAAGCGCATTGTATGGAAGATGTGTACAGCAACCGCATTCATTCGGAAGATTG CGTCGGCTTGCTGACACATTTAATGGAGCAACCCGCTTTAGATCCTATTTATATTGGTGTTGATGACGAACCCACCTTCA CTTGCGAGGTTTACGAATGGCTGGCAGAACAGTTATCCGTTTCTAATATTGAGCACCTTGAACCCACTGAAAACAGTCGC GCGCAAAGAAGCAACAAACGACTGTCCAATGCCAAGGTAAAAGCAACCGGCTACACATTCAAGTACCCAAGTTATCGTGA AGGGTATTTAGAATTACTTGAGTCAATGTAG
Upstream 100 bases:
>100_bases GTCCCAAAAATAACTTTTTAACTTCTTAATCATTTGTCATATTCCCTTTTAATTTTTTTGTGATACTATGCGAAAAACAA GCTAACGAAAAGGTAAATAT
Downstream 100 bases:
>100_bases CGACACACAGCGACCTCACCTAAAAACGGCCAGGTCTGGTCGTTTTTAATAAACCATCATCCAATTTTTTCATCAACGAT TCGGCTTGTTATCGTCGTCC
Product: NAD-dependent epimerase/dehydratase
Products: NA
Alternate protein names: Nucleoside-Diphosphate-Sugar Epimerase; NAD Dependent Epimerase/Dehydratase Family; ActC Family Protein; NAD-Dependent Epimerase/Dehydratase Family Protein; NAD Dependent Epimerase/Dehydratase; Sugar Epimerase/Dehydratase-Like Protein; 3-Beta Hydroxysteroid Dehydrogenase/Isomerase; Epimerase; Epimerase/Dehydratase-Related Protein; Phosphate ABC Transporter Permease; NADP Oxidoreductase Co; NAD Dependent Epimerase/Dehydratase Family Protein; Ketopantoate Reductase ApbA/PanE Domain Protein; Glucose Epimerase Protein; Nucleoside-Diphosphate-Sugar Epimerase Protein; NAD Dependent Epimerase/Dehydratase-Related Protein
Number of amino acids: Translated: 276; Mature: 275
Protein sequence:
>276_residues MARVLIAGCGDIGCRLGANLAKKGHEVFGMRRDVSKISAPIQPIEADLFGQLPELPDQLDYVFYIVSAKSYNDVAYYKAY VMGLKHLIDALKDQPIKRLFFISSSSVFSQSEGERVTEESPTEGKNFSSRRLLEGEELALNAPFPGTVVRFGGIYGPGRT YLIDLVLQGKAHCMEDVYSNRIHSEDCVGLLTHLMEQPALDPIYIGVDDEPTFTCEVYEWLAEQLSVSNIEHLEPTENSR AQRSNKRLSNAKVKATGYTFKYPSYREGYLELLESM
Sequences:
>Translated_276_residues MARVLIAGCGDIGCRLGANLAKKGHEVFGMRRDVSKISAPIQPIEADLFGQLPELPDQLDYVFYIVSAKSYNDVAYYKAY VMGLKHLIDALKDQPIKRLFFISSSSVFSQSEGERVTEESPTEGKNFSSRRLLEGEELALNAPFPGTVVRFGGIYGPGRT YLIDLVLQGKAHCMEDVYSNRIHSEDCVGLLTHLMEQPALDPIYIGVDDEPTFTCEVYEWLAEQLSVSNIEHLEPTENSR AQRSNKRLSNAKVKATGYTFKYPSYREGYLELLESM >Mature_275_residues ARVLIAGCGDIGCRLGANLAKKGHEVFGMRRDVSKISAPIQPIEADLFGQLPELPDQLDYVFYIVSAKSYNDVAYYKAYV MGLKHLIDALKDQPIKRLFFISSSSVFSQSEGERVTEESPTEGKNFSSRRLLEGEELALNAPFPGTVVRFGGIYGPGRTY LIDLVLQGKAHCMEDVYSNRIHSEDCVGLLTHLMEQPALDPIYIGVDDEPTFTCEVYEWLAEQLSVSNIEHLEPTENSRA QRSNKRLSNAKVKATGYTFKYPSYREGYLELLESM
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI1788327, Length=278, Percent_Identity=26.2589928057554, Blast_Score=64, Evalue=1e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 30952; Mature: 30820
Theoretical pI: Translated: 5.07; Mature: 5.07
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MARVLIAGCGDIGCRLGANLAKKGHEVFGMRRDVSKISAPIQPIEADLFGQLPELPDQLD CCEEEEECCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCCHHHC YVFYIVSAKSYNDVAYYKAYVMGLKHLIDALKDQPIKRLFFISSSSVFSQSEGERVTEES EEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHCCCCCCCCCCCC PTEGKNFSSRRLLEGEELALNAPFPGTVVRFGGIYGPGRTYLIDLVLQGKAHCMEDVYSN CCCCCCCCCCCCCCCCCEEEECCCCCCEEEECCCCCCCHHEEEEEHHHCHHHHHHHHHHC RIHSEDCVGLLTHLMEQPALDPIYIGVDDEPTFTCEVYEWLAEQLSVSNIEHLEPTENSR CCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCEEHHHHHHHHHHHHHCCCCCCCCCCCHH AQRSNKRLSNAKVKATGYTFKYPSYREGYLELLESM HHHHHHHHCCCEEEECCEEEECCCHHHHHHHHHHCC >Mature Secondary Structure ARVLIAGCGDIGCRLGANLAKKGHEVFGMRRDVSKISAPIQPIEADLFGQLPELPDQLD CEEEEECCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCCHHHC YVFYIVSAKSYNDVAYYKAYVMGLKHLIDALKDQPIKRLFFISSSSVFSQSEGERVTEES EEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHCCCCCCCCCCCC PTEGKNFSSRRLLEGEELALNAPFPGTVVRFGGIYGPGRTYLIDLVLQGKAHCMEDVYSN CCCCCCCCCCCCCCCCCEEEECCCCCCEEEECCCCCCCHHEEEEEHHHCHHHHHHHHHHC RIHSEDCVGLLTHLMEQPALDPIYIGVDDEPTFTCEVYEWLAEQLSVSNIEHLEPTENSR CCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCEEHHHHHHHHHHHHHCCCCCCCCCCCHH AQRSNKRLSNAKVKATGYTFKYPSYREGYLELLESM HHHHHHHHCCCEEEECCEEEECCCHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA