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The map label for this gene is lolC [H]

Identifier: 78484780

GI number: 78484780

Start: 488119

End: 489414

Strand: Reverse

Name: lolC [H]

Synonym: Tcr_0435

Alternate gene names: 78484780

Gene position: 489414-488119 (Counterclockwise)

Preceding gene: 78484781

Following gene: 78484779

Centisome position: 20.16

GC content: 44.37

Gene sequence:

>1296_bases
ATGAACAATCCGATTTTCAATCGCCTGACCTTATTGCAATTTATAGCCTGGCGAAATATTTGGCGAAACCGGGTCAGAAG
CAGTCTGACGATTTCCGCACTGGCCGGTGGGTTGATTATGCTCATCCTGTATGCGGCTTTGTTAGAGGGCATGTCTCGCC
AAATGGTGACCTATGCGACTGATATTTCCAGCTCACATCTTCAAATGCACCGCTCAGCCTACATTGATGATCAGGACATT
TATGCCACCATCCCATGGTCGTATTTAACCGCTCTTGAAAACTCTTCTCTTCCTGTTGAAATGGCTCCTAGACTTTATGC
GGCAGCGTTAGCGAGTTCAAAAGATAATTCAACCGGTGTCATGATCAAAGCGATTGACCCACAACGAGAACGCCATGTCA
CTAAATTGCTTACCCACATGCGCTCCGGCAAAGCATCGTTTACGCCCATACAAAAAAACGGATTAACACATTACCCCGTT
TTGATCGGAGCTCAGCTTGCAAGAAATTTACAACTCTCTCCCGGAAGTGAATTGGTTCTGGTCACACAAGCGATTGACGG
AAGTATAGGAAACGCTCTTTTTGAAGTCACGGGAATCTTAAGGCCGCTTGAACCCAACTTTGATCGCATGGGCGTTTTAA
TGTCGATTAAAGCGTATCAAAGCCTTATGTATCAAGAGGATGGCTTTCATGAATTGGCAATTAAAACGCACAATATTGAT
CACTTAAACACCCTGCAAAAACAACTCGAGATGCAAATCGCTCAATTACAACAACGCAACCCTTTAGACGCATTGGGTGG
TAACGTGGTTATTCGAAACTGGAAAGAACTCAATCCCCCAGTTGCGGACATGTTGGAACTGAGCAGTACCATGTTACTGA
TTGTCGGCTTAATCGTAATTGGCCTCGCATCACTGGGGATGGTGAATACCATGTTAATGTCGGTGCATGAACGAACGCAT
GAATTTGGCACCTTACTGGCCATTGGTATGAAAGCACGCTGGCTCTTATTGATGGTCGTTATGGAATCTTTTTATTTAGC
CTTAATATCCGCAATTATCGGTTCGATAATTGGGAGCGCCATTGCCAAACAATTTGAAAATAAAGGCATCGACTTCAGTC
ATATGATGCCAGATGGTTATGACTGGGCTGGCGTTGTTTTTGAACCGGTCATGAAAGGCTATCTGTTACCCGAGCAAGTC
TTTCAAGCCAGTCTATTAATGATTGTATTAACCATGCTGGCCGCCTTAATCCCATCATGGCGTATTGTGCGTTTAAAGCC
TGCTGAGGTAATTTAA

Upstream 100 bases:

>100_bases
ACAGAATCAACCGTCATTCTCTACAACGACATTCAATTCGATATTCCGCTAACCAAAAACTTTTTTTCATTAAGAAATCT
TAAACAGCGGCATTAAGTTC

Downstream 100 bases:

>100_bases
TGTCCATTCAACACAGTCACCTCCCCTTCTCAATATTAATTAATTTTGCCTGGCGTAATTTATGGCGCCATCGACGAAGA
ACACTGATTACTCTGACCAC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 431; Mature: 431

Protein sequence:

>431_residues
MNNPIFNRLTLLQFIAWRNIWRNRVRSSLTISALAGGLIMLILYAALLEGMSRQMVTYATDISSSHLQMHRSAYIDDQDI
YATIPWSYLTALENSSLPVEMAPRLYAAALASSKDNSTGVMIKAIDPQRERHVTKLLTHMRSGKASFTPIQKNGLTHYPV
LIGAQLARNLQLSPGSELVLVTQAIDGSIGNALFEVTGILRPLEPNFDRMGVLMSIKAYQSLMYQEDGFHELAIKTHNID
HLNTLQKQLEMQIAQLQQRNPLDALGGNVVIRNWKELNPPVADMLELSSTMLLIVGLIVIGLASLGMVNTMLMSVHERTH
EFGTLLAIGMKARWLLLMVVMESFYLALISAIIGSIIGSAIAKQFENKGIDFSHMMPDGYDWAGVVFEPVMKGYLLPEQV
FQASLLMIVLTMLAALIPSWRIVRLKPAEVI

Sequences:

>Translated_431_residues
MNNPIFNRLTLLQFIAWRNIWRNRVRSSLTISALAGGLIMLILYAALLEGMSRQMVTYATDISSSHLQMHRSAYIDDQDI
YATIPWSYLTALENSSLPVEMAPRLYAAALASSKDNSTGVMIKAIDPQRERHVTKLLTHMRSGKASFTPIQKNGLTHYPV
LIGAQLARNLQLSPGSELVLVTQAIDGSIGNALFEVTGILRPLEPNFDRMGVLMSIKAYQSLMYQEDGFHELAIKTHNID
HLNTLQKQLEMQIAQLQQRNPLDALGGNVVIRNWKELNPPVADMLELSSTMLLIVGLIVIGLASLGMVNTMLMSVHERTH
EFGTLLAIGMKARWLLLMVVMESFYLALISAIIGSIIGSAIAKQFENKGIDFSHMMPDGYDWAGVVFEPVMKGYLLPEQV
FQASLLMIVLTMLAALIPSWRIVRLKPAEVI
>Mature_431_residues
MNNPIFNRLTLLQFIAWRNIWRNRVRSSLTISALAGGLIMLILYAALLEGMSRQMVTYATDISSSHLQMHRSAYIDDQDI
YATIPWSYLTALENSSLPVEMAPRLYAAALASSKDNSTGVMIKAIDPQRERHVTKLLTHMRSGKASFTPIQKNGLTHYPV
LIGAQLARNLQLSPGSELVLVTQAIDGSIGNALFEVTGILRPLEPNFDRMGVLMSIKAYQSLMYQEDGFHELAIKTHNID
HLNTLQKQLEMQIAQLQQRNPLDALGGNVVIRNWKELNPPVADMLELSSTMLLIVGLIVIGLASLGMVNTMLMSVHERTH
EFGTLLAIGMKARWLLLMVVMESFYLALISAIIGSIIGSAIAKQFENKGIDFSHMMPDGYDWAGVVFEPVMKGYLLPEQV
FQASLLMIVLTMLAALIPSWRIVRLKPAEVI

Specific function: Part of an ATP-dependent transport system responsible for the release of lipoproteins targeted to the outer membrane from the inner membrane. Such a release is dependent of the sorting-signal (absence of an Asp at position 2 of the mature lipoprotein) and

COG id: COG4591

COG function: function code M; ABC-type transport system, involved in lipoprotein release, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ABC-4 integral membrane protein family. LolC/E subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003838
- InterPro:   IPR011925 [H]

Pfam domain/function: PF02687 FtsX [H]

EC number: NA

Molecular weight: Translated: 48000; Mature: 48000

Theoretical pI: Translated: 8.02; Mature: 8.02

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.8 %Met     (Translated Protein)
5.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
5.8 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNNPIFNRLTLLQFIAWRNIWRNRVRSSLTISALAGGLIMLILYAALLEGMSRQMVTYAT
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DISSSHLQMHRSAYIDDQDIYATIPWSYLTALENSSLPVEMAPRLYAAALASSKDNSTGV
CCCHHHHHHHHHHCCCCCCEEEECCHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCE
MIKAIDPQRERHVTKLLTHMRSGKASFTPIQKNGLTHYPVLIGAQLARNLQLSPGSELVL
EEEECCCHHHHHHHHHHHHHHCCCCCCCCHHCCCCCCCHHHHHHHHHCCCCCCCCCCEEE
VTQAIDGSIGNALFEVTGILRPLEPNFDRMGVLMSIKAYQSLMYQEDGFHELAIKTHNID
EEECCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCH
HLNTLQKQLEMQIAQLQQRNPLDALGGNVVIRNWKELNPPVADMLELSSTMLLIVGLIVI
HHHHHHHHHHHHHHHHHHCCCHHHCCCCEEEECCHHCCCCHHHHHHHHHHHHHHHHHHHH
GLASLGMVNTMLMSVHERTHEFGTLLAIGMKARWLLLMVVMESFYLALISAIIGSIIGSA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IAKQFENKGIDFSHMMPDGYDWAGVVFEPVMKGYLLPEQVFQASLLMIVLTMLAALIPSW
HHHHHHHCCCCHHHCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCC
RIVRLKPAEVI
EEEEECCCCCC
>Mature Secondary Structure
MNNPIFNRLTLLQFIAWRNIWRNRVRSSLTISALAGGLIMLILYAALLEGMSRQMVTYAT
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DISSSHLQMHRSAYIDDQDIYATIPWSYLTALENSSLPVEMAPRLYAAALASSKDNSTGV
CCCHHHHHHHHHHCCCCCCEEEECCHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCE
MIKAIDPQRERHVTKLLTHMRSGKASFTPIQKNGLTHYPVLIGAQLARNLQLSPGSELVL
EEEECCCHHHHHHHHHHHHHHCCCCCCCCHHCCCCCCCHHHHHHHHHCCCCCCCCCCEEE
VTQAIDGSIGNALFEVTGILRPLEPNFDRMGVLMSIKAYQSLMYQEDGFHELAIKTHNID
EEECCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCH
HLNTLQKQLEMQIAQLQQRNPLDALGGNVVIRNWKELNPPVADMLELSSTMLLIVGLIVI
HHHHHHHHHHHHHHHHHHCCCHHHCCCCEEEECCHHCCCCHHHHHHHHHHHHHHHHHHHH
GLASLGMVNTMLMSVHERTHEFGTLLAIGMKARWLLLMVVMESFYLALISAIIGSIIGSA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IAKQFENKGIDFSHMMPDGYDWAGVVFEPVMKGYLLPEQVFQASLLMIVLTMLAALIPSW
HHHHHHHCCCCHHHCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCC
RIVRLKPAEVI
EEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10910347 [H]