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The map label for this gene is rbcR [H]

Identifier: 78484771

GI number: 78484771

Start: 477825

End: 478751

Strand: Reverse

Name: rbcR [H]

Synonym: Tcr_0426

Alternate gene names: 78484771

Gene position: 478751-477825 (Counterclockwise)

Preceding gene: 78484777

Following gene: 78484770

Centisome position: 19.72

GC content: 42.18

Gene sequence:

>927_bases
ATGCAAAACTTACACATAACCGCCCAGCAGATCAGGATTTTCGAAGCCGTTTCAAGAAATTTGAGCTACACAAAAGCAGC
GGCAGAACTCAATCTTTCTCAACCGGCCGTTTCCGTTCAAGTAAAGCGTTTGGAAGAAAATAACGAGATTAAATTGATTG
AAGTGATTGGAAAAAAACTCTATTTAACATCCGCAGGTGAACACATGTTTAAGACCTGCACCACCATTCTAGAAGAGCTC
AAGACCCTAAACACCAATATTAAAACCGACCAAAATAAAATTGAAGGGGAACTCAAATTAGCGATTGTAACCCCCGCTAA
ATTTTTTATTCCTTATGTTTTGAAAGCATTTTTAAATAAATACCCAGATGTCATTCCATCCATAACAGTTGTTAATAGAA
GACGCATCTTAGATGAGCTAAAACAAAACCAATATCACCTCTCAATTATGGGCAGAGTGCCACCGGAATTAAAGATGGAA
GCCTTCCCCTTTTTCAAGAATGAACTCATTGTTGCGGCCCCCCCTAACCACCCGCTTGCAAAGCATAAACAAATTCCTTT
ATCTGACCTCATTAATGAAAACTTTTTGATGCGTGAAGCAGGCTCGGGTATCCGTATTGCAACAGAAGAGCGTTTTGCTG
AAGAAGGGTATGCCATACAACCCTATATGGAACTAGGCAGTACGGAAGCAATCAAACAAGGGGTCATGGCAGGCCTGGGT
ATTTCTGTCATTGCCCGACACGCGGTGCGCATCGAAGCAAAATACGATCATTTAACCGTTCTGGACGTGCAAGGGTTTCC
ATTGAGTCGCGATTGGTACATTGCCAAAATGCAAGATAAGGTACTCATGCCACCGGCTGTTGCCTTTTTAGAGTTTCTAA
AATCGGTCGACATTAACAAATTGCTGGCCATGTCGGACACGCGCTAA

Upstream 100 bases:

>100_bases
TATTGAGTATTTGTTATACAATTCATAAACAAATGTATATGATTCGACTCATTTACTTTATATATCAACCAGTTATGAGT
TTACCAATTAGGAAAACCAA

Downstream 100 bases:

>100_bases
GGAATCATTATGCCTGAAAAAATTTCCATCCTGGCTCGAAACGCCACATTAAGACAACTTCAAGTCTTTGAAAGCATTGC
CCGACATAACAGCTTCTCCA

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 308; Mature: 308

Protein sequence:

>308_residues
MQNLHITAQQIRIFEAVSRNLSYTKAAAELNLSQPAVSVQVKRLEENNEIKLIEVIGKKLYLTSAGEHMFKTCTTILEEL
KTLNTNIKTDQNKIEGELKLAIVTPAKFFIPYVLKAFLNKYPDVIPSITVVNRRRILDELKQNQYHLSIMGRVPPELKME
AFPFFKNELIVAAPPNHPLAKHKQIPLSDLINENFLMREAGSGIRIATEERFAEEGYAIQPYMELGSTEAIKQGVMAGLG
ISVIARHAVRIEAKYDHLTVLDVQGFPLSRDWYIAKMQDKVLMPPAVAFLEFLKSVDINKLLAMSDTR

Sequences:

>Translated_308_residues
MQNLHITAQQIRIFEAVSRNLSYTKAAAELNLSQPAVSVQVKRLEENNEIKLIEVIGKKLYLTSAGEHMFKTCTTILEEL
KTLNTNIKTDQNKIEGELKLAIVTPAKFFIPYVLKAFLNKYPDVIPSITVVNRRRILDELKQNQYHLSIMGRVPPELKME
AFPFFKNELIVAAPPNHPLAKHKQIPLSDLINENFLMREAGSGIRIATEERFAEEGYAIQPYMELGSTEAIKQGVMAGLG
ISVIARHAVRIEAKYDHLTVLDVQGFPLSRDWYIAKMQDKVLMPPAVAFLEFLKSVDINKLLAMSDTR
>Mature_308_residues
MQNLHITAQQIRIFEAVSRNLSYTKAAAELNLSQPAVSVQVKRLEENNEIKLIEVIGKKLYLTSAGEHMFKTCTTILEEL
KTLNTNIKTDQNKIEGELKLAIVTPAKFFIPYVLKAFLNKYPDVIPSITVVNRRRILDELKQNQYHLSIMGRVPPELKME
AFPFFKNELIVAAPPNHPLAKHKQIPLSDLINENFLMREAGSGIRIATEERFAEEGYAIQPYMELGSTEAIKQGVMAGLG
ISVIARHAVRIEAKYDHLTVLDVQGFPLSRDWYIAKMQDKVLMPPAVAFLEFLKSVDINKLLAMSDTR

Specific function: Trans-acting transcriptional regulator of RuBisCO genes (rbcAB) expression [H]

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788481, Length=297, Percent_Identity=25.2525252525253, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI157672245, Length=226, Percent_Identity=28.7610619469027, Blast_Score=96, Evalue=2e-21,
Organism=Escherichia coli, GI1790399, Length=250, Percent_Identity=25.2, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI145693105, Length=291, Percent_Identity=23.7113402061856, Blast_Score=88, Evalue=8e-19,
Organism=Escherichia coli, GI1787879, Length=245, Percent_Identity=25.3061224489796, Blast_Score=83, Evalue=3e-17,
Organism=Escherichia coli, GI1789204, Length=242, Percent_Identity=28.099173553719, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI1787530, Length=249, Percent_Identity=28.1124497991968, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1786401, Length=293, Percent_Identity=22.8668941979522, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1788887, Length=242, Percent_Identity=26.8595041322314, Blast_Score=75, Evalue=6e-15,
Organism=Escherichia coli, GI1787601, Length=180, Percent_Identity=27.2222222222222, Blast_Score=75, Evalue=8e-15,
Organism=Escherichia coli, GI1788296, Length=241, Percent_Identity=25.7261410788382, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1788748, Length=247, Percent_Identity=23.0769230769231, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI87082132, Length=244, Percent_Identity=24.1803278688525, Blast_Score=65, Evalue=5e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34873; Mature: 34873

Theoretical pI: Translated: 9.14; Mature: 9.14

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQNLHITAQQIRIFEAVSRNLSYTKAAAELNLSQPAVSVQVKRLEENNEIKLIEVIGKKL
CCCCEEHHHHHHHHHHHHCCCCHHHHHHHCCCCCCHHEEEEEEECCCCCEEEEEECCCEE
YLTSAGEHMFKTCTTILEELKTLNTNIKTDQNKIEGELKLAIVTPAKFFIPYVLKAFLNK
EEECCCHHHHHHHHHHHHHHHHHCCCCCCCCHHCCCEEEEEEECCHHHHHHHHHHHHHHH
YPDVIPSITVVNRRRILDELKQNQYHLSIMGRVPPELKMEAFPFFKNELIVAAPPNHPLA
CCHHCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCEEEECCCCCCCC
KHKQIPLSDLINENFLMREAGSGIRIATEERFAEEGYAIQPYMELGSTEAIKQGVMAGLG
CCCCCCHHHHHCCCEEEEECCCCCEEEEHHHHHHCCCEECHHHHCCCHHHHHHHHHHCCC
ISVIARHAVRIEAKYDHLTVLDVQGFPLSRDWYIAKMQDKVLMPPAVAFLEFLKSVDINK
HHHHHHHHEEEEEECCEEEEEEECCCCCCCCEEEEEECCCCCCCHHHHHHHHHHCCCHHH
LLAMSDTR
HHCCCCCC
>Mature Secondary Structure
MQNLHITAQQIRIFEAVSRNLSYTKAAAELNLSQPAVSVQVKRLEENNEIKLIEVIGKKL
CCCCEEHHHHHHHHHHHHCCCCHHHHHHHCCCCCCHHEEEEEEECCCCCEEEEEECCCEE
YLTSAGEHMFKTCTTILEELKTLNTNIKTDQNKIEGELKLAIVTPAKFFIPYVLKAFLNK
EEECCCHHHHHHHHHHHHHHHHHCCCCCCCCHHCCCEEEEEEECCHHHHHHHHHHHHHHH
YPDVIPSITVVNRRRILDELKQNQYHLSIMGRVPPELKMEAFPFFKNELIVAAPPNHPLA
CCHHCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCCCCEEEECCCCCCCC
KHKQIPLSDLINENFLMREAGSGIRIATEERFAEEGYAIQPYMELGSTEAIKQGVMAGLG
CCCCCCHHHHHCCCEEEEECCCCCEEEEHHHHHHCCCEECHHHHCCCHHHHHHHHHHCCC
ISVIARHAVRIEAKYDHLTVLDVQGFPLSRDWYIAKMQDKVLMPPAVAFLEFLKSVDINK
HHHHHHHHEEEEEECCEEEEEEECCCCCCCCEEEEEECCCCCCCHHHHHHHHHHCCCHHH
LLAMSDTR
HHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1907267; 2708310 [H]