Click here to switch to the map view.

The map label for this gene is sodA [H]

Identifier: 78484582

GI number: 78484582

Start: 282440

End: 283051

Strand: Reverse

Name: sodA [H]

Synonym: Tcr_0237

Alternate gene names: 78484582

Gene position: 283051-282440 (Counterclockwise)

Preceding gene: 78484583

Following gene: 78484581

Centisome position: 11.66

GC content: 45.75

Gene sequence:

>612_bases
ATGGCTTTTACTCTTCCTGATTTACCTTACGATTATGATGCACTAGAAGTTTCTATCGATGCTCGCACGATGGAAATTCA
CCATACAAAACACCATAACACTTACGTAACCAATCTAAATAACGCCATTGCAGACACGGAAAATGCCGATAAGTCTTTGG
AAGATTTGATTGCGAATGCAGGGTCTATTTCTCCTGCTGTGCGTAACAATGGTGGTGGACACTGGAACCATTCTTTCTTC
TGGGAAGTGATGACTGGTGACAGCATGGGCGCTCCAACAGGTGCATTAGCAGATGACATCAATGCCACTTTCGGTAGCGT
AGATGCCATGAAAGAAAAATTCAACACAGCCGGTGCCACACGCTTCGGTTCTGGTTGGGCATGGTTAACGGTTTCTGCAG
ACGGCAAGCTTGAAATCTCGTCAACGCCAAACCAAGACAACCCATTAATGGACGTTGCCGAAGTCAAAGGAACACCTATT
TTAGGTCTGGACGTTTGGGAACATGCTTATTACCTACGTTACCAAAACCTACGCCCTGCTTACATGCAAGCGTGGTGGGA
CGTCGTCAACTGGAACAAAGTTTCAGAACTGTACCAAGCCGCAAAAGCTTAA

Upstream 100 bases:

>100_bases
TTTTAAAATGAATACCCGATTATTTCAGTCGGGTATTGATAATTCGTCGTTTGTCGTTAAAATGAACGTTCAATTCAATT
ACACAAAAAGGAAATGCAAT

Downstream 100 bases:

>100_bases
TCGCTCTTGTTCTCAGAAAAACCCCGCAGTGCGGGGTTTTTTATCGCCATCAACAACTAACTTTCAGCCTACCGCCTCAA
GCATTTTCCGCTCCCTTCTC

Product: superoxide dismutase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 203; Mature: 202

Protein sequence:

>203_residues
MAFTLPDLPYDYDALEVSIDARTMEIHHTKHHNTYVTNLNNAIADTENADKSLEDLIANAGSISPAVRNNGGGHWNHSFF
WEVMTGDSMGAPTGALADDINATFGSVDAMKEKFNTAGATRFGSGWAWLTVSADGKLEISSTPNQDNPLMDVAEVKGTPI
LGLDVWEHAYYLRYQNLRPAYMQAWWDVVNWNKVSELYQAAKA

Sequences:

>Translated_203_residues
MAFTLPDLPYDYDALEVSIDARTMEIHHTKHHNTYVTNLNNAIADTENADKSLEDLIANAGSISPAVRNNGGGHWNHSFF
WEVMTGDSMGAPTGALADDINATFGSVDAMKEKFNTAGATRFGSGWAWLTVSADGKLEISSTPNQDNPLMDVAEVKGTPI
LGLDVWEHAYYLRYQNLRPAYMQAWWDVVNWNKVSELYQAAKA
>Mature_202_residues
AFTLPDLPYDYDALEVSIDARTMEIHHTKHHNTYVTNLNNAIADTENADKSLEDLIANAGSISPAVRNNGGGHWNHSFFW
EVMTGDSMGAPTGALADDINATFGSVDAMKEKFNTAGATRFGSGWAWLTVSADGKLEISSTPNQDNPLMDVAEVKGTPIL
GLDVWEHAYYLRYQNLRPAYMQAWWDVVNWNKVSELYQAAKA

Specific function: Destroys radicals which are normally produced within the cells and which are toxic to biological systems [H]

COG id: COG0605

COG function: function code P; Superoxide dismutase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the iron/manganese superoxide dismutase family [H]

Homologues:

Organism=Homo sapiens, GI67782307, Length=200, Percent_Identity=45.5, Blast_Score=187, Evalue=8e-48,
Organism=Homo sapiens, GI67782305, Length=200, Percent_Identity=45.5, Blast_Score=187, Evalue=8e-48,
Organism=Homo sapiens, GI67782309, Length=200, Percent_Identity=39, Blast_Score=140, Evalue=6e-34,
Organism=Escherichia coli, GI1790342, Length=210, Percent_Identity=49.5238095238095, Blast_Score=199, Evalue=2e-52,
Organism=Escherichia coli, GI1787946, Length=196, Percent_Identity=47.9591836734694, Blast_Score=182, Evalue=2e-47,
Organism=Caenorhabditis elegans, GI17506561, Length=200, Percent_Identity=42.5, Blast_Score=163, Evalue=6e-41,
Organism=Caenorhabditis elegans, GI17569479, Length=202, Percent_Identity=42.5742574257426, Blast_Score=161, Evalue=2e-40,
Organism=Saccharomyces cerevisiae, GI6321796, Length=216, Percent_Identity=40.7407407407407, Blast_Score=149, Evalue=2e-37,
Organism=Drosophila melanogaster, GI17136812, Length=200, Percent_Identity=45, Blast_Score=170, Evalue=6e-43,

Paralogues:

None

Copy number: 2980 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 20 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001189
- InterPro:   IPR019833
- InterPro:   IPR019832
- InterPro:   IPR019831 [H]

Pfam domain/function: PF02777 Sod_Fe_C; PF00081 Sod_Fe_N [H]

EC number: =1.15.1.1 [H]

Molecular weight: Translated: 22457; Mature: 22326

Theoretical pI: Translated: 4.51; Mature: 4.51

Prosite motif: PS00088 SOD_MN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAFTLPDLPYDYDALEVSIDARTMEIHHTKHHNTYVTNLNNAIADTENADKSLEDLIANA
CCEECCCCCCCCCEEEEEECCEEEEEEECCCCCEEEEECCCHHCCCCCCHHHHHHHHHCC
GSISPAVRNNGGGHWNHSFFWEVMTGDSMGAPTGALADDINATFGSVDAMKEKFNTAGAT
CCCCCHHCCCCCCCCCCEEEEEEEECCCCCCCCCCHHHCCCCCCCHHHHHHHHHHCCCCC
RFGSGWAWLTVSADGKLEISSTPNQDNPLMDVAEVKGTPILGLDVWEHAYYLRYQNLRPA
EECCCEEEEEEECCCEEEECCCCCCCCCCEEHHHCCCCCEEEHHHHHHEEEEEECCCCHH
YMQAWWDVVNWNKVSELYQAAKA
HHHHHHHHCCHHHHHHHHHHHCC
>Mature Secondary Structure 
AFTLPDLPYDYDALEVSIDARTMEIHHTKHHNTYVTNLNNAIADTENADKSLEDLIANA
CEECCCCCCCCCEEEEEECCEEEEEEECCCCCEEEEECCCHHCCCCCCHHHHHHHHHCC
GSISPAVRNNGGGHWNHSFFWEVMTGDSMGAPTGALADDINATFGSVDAMKEKFNTAGAT
CCCCCHHCCCCCCCCCCEEEEEEEECCCCCCCCCCHHHCCCCCCCHHHHHHHHHHCCCCC
RFGSGWAWLTVSADGKLEISSTPNQDNPLMDVAEVKGTPILGLDVWEHAYYLRYQNLRPA
EECCCEEEEEEECCCEEEECCCCCCCCCCEEHHHCCCCCEEEHHHHHHEEEEEECCCCHH
YMQAWWDVVNWNKVSELYQAAKA
HHHHHHHHCCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12663927 [H]