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The map label for this gene is yebA [H]

Identifier: 78358822

GI number: 78358822

Start: 3728799

End: 3730118

Strand: Reverse

Name: yebA [H]

Synonym: Dde_3784

Alternate gene names: 78358822

Gene position: 3730118-3728799 (Counterclockwise)

Preceding gene: NA

Following gene: 78358819

Centisome position: 100.0

GC content: 53.48

Gene sequence:

>1320_bases
ATGCGGCCAGTAAAAAAAAGAAACACACTGCGGACTGCGGATACGCGGAAAAAACGCCTTGCGGCCGGTATGGCGGTTGT
CATCTTATGCCTTGTGATCGTCACGGGGCTGTTTTTGCGCGACGAAGATACCACGCCCGAGGCTGTGACCGGCGGTGCGC
AGCAGAGCATGACAGAGGATGTTGCCACGCCTGAGATGCCTCCGGTGCCCGTGCCAGAAACCATCACAGGCACCATCCAG
CCCGGCGATACGGTTTCCGGTATTCTGGAAAACTGGCTCTCTCCGGCAGAGGTTTATTCTCTGGCAAGGCAGTGCGATGA
CGTATTCAGCCTTTCCCGTATCAAGGCGGGGCAGCCCTGGAGCGTGACCTGTCTGCAGGATGAACTTCAGTCGTTCCGGT
ATGAAATAGATGACACAAGCATCCTGACCGTGGCGCGGGACGGTGATATTTTTCACGCCGCAGTGGAACCTATTCCCTAT
GATATCCAGCTGGACAGGGTGGAAGGAAAAATAGAGTCCAACCTGTTCACCGCAGTGGAAAACGCCGGTGAAGGTGCTGC
GCTGGCATACCGCCTTGCAGACATATTCATGTGGGAAGTGGATTTCATCAGGGATATACGCGAAGGCGACAGTTTTACCG
TGGTGGTGGAAAAACGCTACCGTGAAGGTGAGTTCAAAGGGTACGGACGTATTCTGGCTGCCCGTTTTGTCAATCAGGAC
ACCCCGTATGAAGGCTTTTTGCTGGAAGACGGCGGCAGGGGCGAATATTACACAGCGGACGGCAAAAGCCTGCGCAAGGC
CTTTCTGAAGGCTCCTCTTGATTTCAGAAGAATCTCGTCGGGCTACAGCAATGCCCGTCTGCATCCTGTGCTTAATATTG
TCAGACCACATCACGGAATAGATTACGCCGCCCCCACAGGCACCCCCATCAAAGCCATAGGCAGCGGTACCGTTGTGGCC
GTTGCCAGAACCAAGGCCGCCGGAAAGTATGTTAAAATACGGCACATGAACGGATACGAAAGCGCGTATCTTCATATGTC
GCGTTATGCCAGAGGCATCCGCAGCGGGCAGAAAGTGGCTCAGGGACAGGTTATCGGCTATGTGGGAGCAACAGGGTATG
CCACAGGGCCTCATCTTGATTTCCGCATGAAACGCTATGGTAAATACCTTAACCCTTCCAGAGTAACCAACCCCCGTTCG
CAACCCGTATCCAGAGAACGCATGGATGAGTTCATGACAGTGCTTGTTTCGTATAAAGGGTATCTGGACGGAACTCTTGC
TTTACAGACATACGGTGTAGATAACACATCCAGTATGTAG

Upstream 100 bases:

>100_bases
TCCATAGGCTTGTATAGTAGCCTTGTGTAGGGTACACGCCGCTGTCAGGTGGAGGTAACCAGACAAACAGAGTACACGGA
CTTCCGTGCGGGAAGGATTA

Downstream 100 bases:

>100_bases
AAATATAAAAGAAAAATATTGTAGATAACCCCCGCCGGTCATTCCGGCGGGGGTTTTTTATTTTGAAAGTGATTATATGA
TAAAACTTTTTATATTAATG

Product: M24/M37 family peptidase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 439; Mature: 439

Protein sequence:

>439_residues
MRPVKKRNTLRTADTRKKRLAAGMAVVILCLVIVTGLFLRDEDTTPEAVTGGAQQSMTEDVATPEMPPVPVPETITGTIQ
PGDTVSGILENWLSPAEVYSLARQCDDVFSLSRIKAGQPWSVTCLQDELQSFRYEIDDTSILTVARDGDIFHAAVEPIPY
DIQLDRVEGKIESNLFTAVENAGEGAALAYRLADIFMWEVDFIRDIREGDSFTVVVEKRYREGEFKGYGRILAARFVNQD
TPYEGFLLEDGGRGEYYTADGKSLRKAFLKAPLDFRRISSGYSNARLHPVLNIVRPHHGIDYAAPTGTPIKAIGSGTVVA
VARTKAAGKYVKIRHMNGYESAYLHMSRYARGIRSGQKVAQGQVIGYVGATGYATGPHLDFRMKRYGKYLNPSRVTNPRS
QPVSRERMDEFMTVLVSYKGYLDGTLALQTYGVDNTSSM

Sequences:

>Translated_439_residues
MRPVKKRNTLRTADTRKKRLAAGMAVVILCLVIVTGLFLRDEDTTPEAVTGGAQQSMTEDVATPEMPPVPVPETITGTIQ
PGDTVSGILENWLSPAEVYSLARQCDDVFSLSRIKAGQPWSVTCLQDELQSFRYEIDDTSILTVARDGDIFHAAVEPIPY
DIQLDRVEGKIESNLFTAVENAGEGAALAYRLADIFMWEVDFIRDIREGDSFTVVVEKRYREGEFKGYGRILAARFVNQD
TPYEGFLLEDGGRGEYYTADGKSLRKAFLKAPLDFRRISSGYSNARLHPVLNIVRPHHGIDYAAPTGTPIKAIGSGTVVA
VARTKAAGKYVKIRHMNGYESAYLHMSRYARGIRSGQKVAQGQVIGYVGATGYATGPHLDFRMKRYGKYLNPSRVTNPRS
QPVSRERMDEFMTVLVSYKGYLDGTLALQTYGVDNTSSM
>Mature_439_residues
MRPVKKRNTLRTADTRKKRLAAGMAVVILCLVIVTGLFLRDEDTTPEAVTGGAQQSMTEDVATPEMPPVPVPETITGTIQ
PGDTVSGILENWLSPAEVYSLARQCDDVFSLSRIKAGQPWSVTCLQDELQSFRYEIDDTSILTVARDGDIFHAAVEPIPY
DIQLDRVEGKIESNLFTAVENAGEGAALAYRLADIFMWEVDFIRDIREGDSFTVVVEKRYREGEFKGYGRILAARFVNQD
TPYEGFLLEDGGRGEYYTADGKSLRKAFLKAPLDFRRISSGYSNARLHPVLNIVRPHHGIDYAAPTGTPIKAIGSGTVVA
VARTKAAGKYVKIRHMNGYESAYLHMSRYARGIRSGQKVAQGQVIGYVGATGYATGPHLDFRMKRYGKYLNPSRVTNPRS
QPVSRERMDEFMTVLVSYKGYLDGTLALQTYGVDNTSSM

Specific function: Could be involved in cell wall degradation or formation [H]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI87081989, Length=421, Percent_Identity=28.7410926365796, Blast_Score=151, Evalue=1e-37,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR013731
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF08525 OapA_N; PF01551 Peptidase_M23 [H]

EC number: 3.4.24.- [C]

Molecular weight: Translated: 48653; Mature: 48653

Theoretical pI: Translated: 8.36; Mature: 8.36

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRPVKKRNTLRTADTRKKRLAAGMAVVILCLVIVTGLFLRDEDTTPEAVTGGAQQSMTED
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCHHHCCCHHHHHHHH
VATPEMPPVPVPETITGTIQPGDTVSGILENWLSPAEVYSLARQCDDVFSLSRIKAGQPW
CCCCCCCCCCCCCCEEECCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCE
SVTCLQDELQSFRYEIDDTSILTVARDGDIFHAAVEPIPYDIQLDRVEGKIESNLFTAVE
EEHHHHHHHHHHHEECCCCEEEEEEECCCEEEEECCCCCCCEEEECCCCHHHHHHHHHHH
NAGEGAALAYRLADIFMWEVDFIRDIREGDSFTVVVEKRYREGEFKGYGRILAARFVNQD
CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCHHHHHHHHHHCCC
TPYEGFLLEDGGRGEYYTADGKSLRKAFLKAPLDFRRISSGYSNARLHPVLNIVRPHHGI
CCCCCEEEECCCCCCEEECCCHHHHHHHHHCCCHHHHHHCCCCCCCHHHHHHHHCCCCCC
DYAAPTGTPIKAIGSGTVVAVARTKAAGKYVKIRHMNGYESAYLHMSRYARGIRSGQKVA
CCCCCCCCCEEECCCCCEEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCHHHH
QGQVIGYVGATGYATGPHLDFRMKRYGKYLNPSRVTNPRSQPVSRERMDEFMTVLVSYKG
CCCEEEEECCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC
YLDGTLALQTYGVDNTSSM
CCCCEEEEEEECCCCCCCC
>Mature Secondary Structure
MRPVKKRNTLRTADTRKKRLAAGMAVVILCLVIVTGLFLRDEDTTPEAVTGGAQQSMTED
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCHHHCCCHHHHHHHH
VATPEMPPVPVPETITGTIQPGDTVSGILENWLSPAEVYSLARQCDDVFSLSRIKAGQPW
CCCCCCCCCCCCCCEEECCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCE
SVTCLQDELQSFRYEIDDTSILTVARDGDIFHAAVEPIPYDIQLDRVEGKIESNLFTAVE
EEHHHHHHHHHHHEECCCCEEEEEEECCCEEEEECCCCCCCEEEECCCCHHHHHHHHHHH
NAGEGAALAYRLADIFMWEVDFIRDIREGDSFTVVVEKRYREGEFKGYGRILAARFVNQD
CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCHHHHHHHHHHCCC
TPYEGFLLEDGGRGEYYTADGKSLRKAFLKAPLDFRRISSGYSNARLHPVLNIVRPHHGI
CCCCCEEEECCCCCCEEECCCHHHHHHHHHCCCHHHHHHCCCCCCCHHHHHHHHCCCCCC
DYAAPTGTPIKAIGSGTVVAVARTKAAGKYVKIRHMNGYESAYLHMSRYARGIRSGQKVA
CCCCCCCCCEEECCCCCEEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCHHHH
QGQVIGYVGATGYATGPHLDFRMKRYGKYLNPSRVTNPRSQPVSRERMDEFMTVLVSYKG
CCCEEEEECCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC
YLDGTLALQTYGVDNTSSM
CCCCEEEEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]