Click here to switch to the map view.

The map label for this gene is nisX1 [H]

Identifier: 78358789

GI number: 78358789

Start: 3702626

End: 3703222

Strand: Reverse

Name: nisX1 [H]

Synonym: Dde_3750

Alternate gene names: 78358789

Gene position: 3703222-3702626 (Counterclockwise)

Preceding gene: 78358792

Following gene: 78358787

Centisome position: 99.28

GC content: 52.93

Gene sequence:

>597_bases
GTGACACGTAAGCACCGCTATCCGGCAAATATAGAACAGATCCCTCGTGCAGCCCCCAATGTGCTTGCCCGTGATTTTAC
GGCATCAACGCCTGACCAGAAATGGACGGCAGACATAACGTATCTGTGGACAAATGAAGGCTGGCTGTACCTTGCTGTTG
TCTTGGATCTGTTCTCAAGACGTGTGGTGGGTTGGGCCATGTCTGAACGAGCAGATGCCCACCTGGCTTACCAAGCGTTG
GAGGCTGCTATCCAACTGATAAGACCTGGGCTCGGACTGCTGCATCATAGCGACCAGGGGTGCCAATACACCAGTGGAGC
CTTCTCCGCAGTGCTTGATCAGTACGGAATCGTATGCAGTATGAGTCGCCGGGGGAACTGCTGGGACAATGCAGTCACGG
AAAGTTTCTTTAGCAAGCTCAAGCGGGAGTGGGTGCGCGGGAAACGGTATCGGACGCGCAACGACGCACGACAGGACATC
TTCCTTTATCTGGAAGCGTTTTATAATCGGAAAAGGCGACATGCCTTTCTTGGCTACCAAAGTCCGGAGGCATTCGAACA
ATTGTTTTATCAGGCCAAGCAAAAACAGGCGGCGTAA

Upstream 100 bases:

>100_bases
TACCGAAAAATCCATAAGGACATCATAGAGGAAACGACCTTACGGTGCTGTCGCGAGACCGTCCGAAGAGCCATGAAGTC
CGGATGGGCTGCGTTCAAAA

Downstream 100 bases:

>100_bases
TCTCCCGGACACTGTCCATTTTTCTTATGGCATTCCAGAGTTCCGGCCCTTAAAAATGATCTCAACGAACTACAGTAACA
CAGCTTCCATTCCCTCAATC

Product: putative transposase B

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 198; Mature: 197

Protein sequence:

>198_residues
MTRKHRYPANIEQIPRAAPNVLARDFTASTPDQKWTADITYLWTNEGWLYLAVVLDLFSRRVVGWAMSERADAHLAYQAL
EAAIQLIRPGLGLLHHSDQGCQYTSGAFSAVLDQYGIVCSMSRRGNCWDNAVTESFFSKLKREWVRGKRYRTRNDARQDI
FLYLEAFYNRKRRHAFLGYQSPEAFEQLFYQAKQKQAA

Sequences:

>Translated_198_residues
MTRKHRYPANIEQIPRAAPNVLARDFTASTPDQKWTADITYLWTNEGWLYLAVVLDLFSRRVVGWAMSERADAHLAYQAL
EAAIQLIRPGLGLLHHSDQGCQYTSGAFSAVLDQYGIVCSMSRRGNCWDNAVTESFFSKLKREWVRGKRYRTRNDARQDI
FLYLEAFYNRKRRHAFLGYQSPEAFEQLFYQAKQKQAA
>Mature_197_residues
TRKHRYPANIEQIPRAAPNVLARDFTASTPDQKWTADITYLWTNEGWLYLAVVLDLFSRRVVGWAMSERADAHLAYQALE
AAIQLIRPGLGLLHHSDQGCQYTSGAFSAVLDQYGIVCSMSRRGNCWDNAVTESFFSKLKREWVRGKRYRTRNDARQDIF
LYLEAFYNRKRRHAFLGYQSPEAFEQLFYQAKQKQAA

Specific function: Involved in the transposition of the insertion sequence [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 integrase catalytic domain [H]

Homologues:

Organism=Homo sapiens, GI310129419, Length=139, Percent_Identity=34.5323741007194, Blast_Score=96, Evalue=2e-20,
Organism=Escherichia coli, GI1788405, Length=170, Percent_Identity=48.2352941176471, Blast_Score=163, Evalue=7e-42,
Organism=Escherichia coli, GI1787263, Length=170, Percent_Identity=48.2352941176471, Blast_Score=163, Evalue=7e-42,
Organism=Escherichia coli, GI1786753, Length=170, Percent_Identity=48.2352941176471, Blast_Score=163, Evalue=7e-42,
Organism=Escherichia coli, GI1786570, Length=170, Percent_Identity=48.2352941176471, Blast_Score=163, Evalue=7e-42,
Organism=Escherichia coli, GI1786490, Length=170, Percent_Identity=48.2352941176471, Blast_Score=163, Evalue=7e-42,
Organism=Escherichia coli, GI1789981, Length=167, Percent_Identity=37.7245508982036, Blast_Score=124, Evalue=5e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001584
- InterPro:   IPR012337 [H]

Pfam domain/function: PF00665 rve [H]

EC number: NA

Molecular weight: Translated: 23009; Mature: 22878

Theoretical pI: Translated: 9.77; Mature: 9.77

Prosite motif: PS50994 INTEGRASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTRKHRYPANIEQIPRAAPNVLARDFTASTPDQKWTADITYLWTNEGWLYLAVVLDLFSR
CCCCCCCCCCHHHHCCCCHHHHHHCCCCCCCCCCEEEEEEEEEECCCHHHHHHHHHHHHH
RVVGWAMSERADAHLAYQALEAAIQLIRPGLGLLHHSDQGCQYTSGAFSAVLDQYGIVCS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCCHHHHHHHHHHHCCEEE
MSRRGNCWDNAVTESFFSKLKREWVRGKRYRTRNDARQDIFLYLEAFYNRKRRHAFLGYQ
CCCCCCCHHHHHHHHHHHHHHHHHHHCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC
SPEAFEQLFYQAKQKQAA
CHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
TRKHRYPANIEQIPRAAPNVLARDFTASTPDQKWTADITYLWTNEGWLYLAVVLDLFSR
CCCCCCCCCHHHHCCCCHHHHHHCCCCCCCCCCEEEEEEEEEECCCHHHHHHHHHHHHH
RVVGWAMSERADAHLAYQALEAAIQLIRPGLGLLHHSDQGCQYTSGAFSAVLDQYGIVCS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCCHHHHHHHHHHHCCEEE
MSRRGNCWDNAVTESFFSKLKREWVRGKRYRTRNDARQDIFLYLEAFYNRKRRHAFLGYQ
CCCCCCCHHHHHHHHHHHHHHHHHHHCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC
SPEAFEQLFYQAKQKQAA
CHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1482189; 11337471; 1482192 [H]