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The map label for this gene is tolB [H]

Identifier: 78358671

GI number: 78358671

Start: 3595706

End: 3597031

Strand: Direct

Name: tolB [H]

Synonym: Dde_3632

Alternate gene names: 78358671

Gene position: 3595706-3597031 (Clockwise)

Preceding gene: 78358670

Following gene: 78358672

Centisome position: 96.39

GC content: 57.24

Gene sequence:

>1326_bases
ATGAAAAAACAGAATGTTACCTTTTTCTGCGCGGTACTGCTGGCGTTGGTGCTGCATATCGCCAGAGCACAGGCGGCCCC
TGTGGAGATAGACATCTTCGGCCCCGGTCAGAATCTGACCTATGTGGCCATGTCCGAACCTGTCACCGATGCCGGCGCCC
CGCTGCCCGCCATGGCGCCCGAACTGCACAGGCTCATACGCCACAACCTCGGTTTTCTGCCGTTTCTTGACTTTGTGGAC
GGCAAAACCGTTATCGGCGGCAACACCCCGCAGGCGTACAAGGCCCCGGGCATCGATTTCAGGCGTTATCTGCTGGCCGG
CACAGACCTGCTGATTGTCACCGGCTGGCCGCAGACACAGCAGGGGCAGAGCAGCAGAGTGGAGCTGCGAGTCTATGAAA
CAGGTCAGGGCAGCATGCTGCTGGGCAAGGCGTACTACGTCACGTCCGAATCACTGCTGCCCGTGGTGGCCGACAAATTC
TGCAGCGACTTCATGAAAATGCTCACGGGACGGGGCGACTTTTTCCTGTCCACGCTGGCTTTTGTCAGCCAGAGCAGAAA
CGGCCAGAAAGATATCTGGGCAGTACGCCCCACAGGGCGCGACCTGCGGCAGCTCACCGCGGTGCAGGGCATTGCCCTGT
CACCTTCATGGTCGCCCGACGGGCGTTATGTCATTTTCAGCCACATCGGCGAACGCAGTCATGCACTGGGTGTGTGGGAC
CGCATCAACAACCGCACCCAGCTTATCCGGTTTCCGGGCAACACGGTCATCGGGCCGACTTTTCTGCCGGACAACAGAGT
GGCTGTCAGCCTTGCCGTCAACGGCAACCCCGACATTTTTCTGCTGAACCACATCTTTAAAAAGCAGAAAGTGCTTGAGC
AGAGCTGGGGCATTGACGTATCGCCATCACTGGATGCCACCGGCAAAAAAATGGCATTTGTCTCCAGCCGGCTGGGTAAT
CCCAACATTTTTCTGAAAGATCTGGACTCCGGCAGTGTCAGACGCATATCCCGCGAAGGCAAATACAACACATCGCCGGA
TATCAGCCCCGACGGAACGCTGATAGTGTATTCGCGCCGCACCGGCGACGGGCACCGCATATTTGTGCACGATCTGGTGA
CCGGACGCGAAAAACAGATAACCTTCGGGCCGGGCAATGATGAAATGCCCAGCTTTGCACCGGACAGCTACTTTATAGCC
TTTGCCTCGAACCGCAGCGGCAAATATAAAGTGTATCTGACAACACGCCACGGAGGCACCCCCAAAATGGTCGATACAGG
CTCTCACGATGCCTCGTTTCCTGCATGGGGCAAACTTTCTGACTGA

Upstream 100 bases:

>100_bases
TGCAGGACATGATGTAGCGCCGCGGGGCGCGGCACCCACGACAACACCGGCCACGAAAACACCAGAATGCTGCCGGATAA
AACCGGAAGAGACGCGAATA

Downstream 100 bases:

>100_bases
TTACAATGCGTAACGGGGGTGTGACAATGTTGTCACGCCCCCGCAGTTTATGTACGTTGCGTATTATAACAGTCTGTCAG
TTCAGGGGATCACCCATCCC

Product: tolB protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 441; Mature: 441

Protein sequence:

>441_residues
MKKQNVTFFCAVLLALVLHIARAQAAPVEIDIFGPGQNLTYVAMSEPVTDAGAPLPAMAPELHRLIRHNLGFLPFLDFVD
GKTVIGGNTPQAYKAPGIDFRRYLLAGTDLLIVTGWPQTQQGQSSRVELRVYETGQGSMLLGKAYYVTSESLLPVVADKF
CSDFMKMLTGRGDFFLSTLAFVSQSRNGQKDIWAVRPTGRDLRQLTAVQGIALSPSWSPDGRYVIFSHIGERSHALGVWD
RINNRTQLIRFPGNTVIGPTFLPDNRVAVSLAVNGNPDIFLLNHIFKKQKVLEQSWGIDVSPSLDATGKKMAFVSSRLGN
PNIFLKDLDSGSVRRISREGKYNTSPDISPDGTLIVYSRRTGDGHRIFVHDLVTGREKQITFGPGNDEMPSFAPDSYFIA
FASNRSGKYKVYLTTRHGGTPKMVDTGSHDASFPAWGKLSD

Sequences:

>Translated_441_residues
MKKQNVTFFCAVLLALVLHIARAQAAPVEIDIFGPGQNLTYVAMSEPVTDAGAPLPAMAPELHRLIRHNLGFLPFLDFVD
GKTVIGGNTPQAYKAPGIDFRRYLLAGTDLLIVTGWPQTQQGQSSRVELRVYETGQGSMLLGKAYYVTSESLLPVVADKF
CSDFMKMLTGRGDFFLSTLAFVSQSRNGQKDIWAVRPTGRDLRQLTAVQGIALSPSWSPDGRYVIFSHIGERSHALGVWD
RINNRTQLIRFPGNTVIGPTFLPDNRVAVSLAVNGNPDIFLLNHIFKKQKVLEQSWGIDVSPSLDATGKKMAFVSSRLGN
PNIFLKDLDSGSVRRISREGKYNTSPDISPDGTLIVYSRRTGDGHRIFVHDLVTGREKQITFGPGNDEMPSFAPDSYFIA
FASNRSGKYKVYLTTRHGGTPKMVDTGSHDASFPAWGKLSD
>Mature_441_residues
MKKQNVTFFCAVLLALVLHIARAQAAPVEIDIFGPGQNLTYVAMSEPVTDAGAPLPAMAPELHRLIRHNLGFLPFLDFVD
GKTVIGGNTPQAYKAPGIDFRRYLLAGTDLLIVTGWPQTQQGQSSRVELRVYETGQGSMLLGKAYYVTSESLLPVVADKF
CSDFMKMLTGRGDFFLSTLAFVSQSRNGQKDIWAVRPTGRDLRQLTAVQGIALSPSWSPDGRYVIFSHIGERSHALGVWD
RINNRTQLIRFPGNTVIGPTFLPDNRVAVSLAVNGNPDIFLLNHIFKKQKVLEQSWGIDVSPSLDATGKKMAFVSSRLGN
PNIFLKDLDSGSVRRISREGKYNTSPDISPDGTLIVYSRRTGDGHRIFVHDLVTGREKQITFGPGNDEMPSFAPDSYFIA
FASNRSGKYKVYLTTRHGGTPKMVDTGSHDASFPAWGKLSD

Specific function: Involved in the tonB-independent uptake of proteins [H]

COG id: COG0823

COG function: function code U; Periplasmic component of the Tol biopolymer transport system

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tolB family [H]

Homologues:

Organism=Escherichia coli, GI1786961, Length=353, Percent_Identity=23.7960339943343, Blast_Score=89, Evalue=8e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011659
- InterPro:   IPR014167
- InterPro:   IPR015943 [H]

Pfam domain/function: PF07676 PD40 [H]

EC number: NA

Molecular weight: Translated: 48541; Mature: 48541

Theoretical pI: Translated: 9.83; Mature: 9.83

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKQNVTFFCAVLLALVLHIARAQAAPVEIDIFGPGQNLTYVAMSEPVTDAGAPLPAMAP
CCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCH
ELHRLIRHNLGFLPFLDFVDGKTVIGGNTPQAYKAPGIDFRRYLLAGTDLLIVTGWPQTQ
HHHHHHHHCCCCCCHHHHCCCCEEECCCCCCCCCCCCCCHHHHHHCCCCEEEEECCCCCC
QGQSSRVELRVYETGQGSMLLGKAYYVTSESLLPVVADKFCSDFMKMLTGRGDFFLSTLA
CCCCCEEEEEEEECCCCCEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH
FVSQSRNGQKDIWAVRPTGRDLRQLTAVQGIALSPSWSPDGRYVIFSHIGERSHALGVWD
HHHHCCCCCCCEEEECCCCHHHHHHHHHCCEEECCCCCCCCCEEEEEECCCCCCEEEHHH
RINNRTQLIRFPGNTVIGPTFLPDNRVAVSLAVNGNPDIFLLNHIFKKQKVLEQSWGIDV
HCCCCEEEEECCCCEEECCEECCCCCEEEEEEECCCCCEEEHHHHHHHHHHHHHHCCCCC
SPSLDATGKKMAFVSSRLGNPNIFLKDLDSGSVRRISREGKYNTSPDISPDGTLIVYSRR
CCCCCCCCCEEEEHHHCCCCCCEEEEECCCCCEEHHHCCCCCCCCCCCCCCCEEEEEEEC
TGDGHRIFVHDLVTGREKQITFGPGNDEMPSFAPDSYFIAFASNRSGKYKVYLTTRHGGT
CCCCCEEEEEEECCCCCCEEEECCCCCCCCCCCCCCEEEEEECCCCCEEEEEEEEECCCC
PKMVDTGSHDASFPAWGKLSD
CCEEECCCCCCCCCCCCCCCC
>Mature Secondary Structure
MKKQNVTFFCAVLLALVLHIARAQAAPVEIDIFGPGQNLTYVAMSEPVTDAGAPLPAMAP
CCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCEEEEEECCCCCCCCCCCCCCCH
ELHRLIRHNLGFLPFLDFVDGKTVIGGNTPQAYKAPGIDFRRYLLAGTDLLIVTGWPQTQ
HHHHHHHHCCCCCCHHHHCCCCEEECCCCCCCCCCCCCCHHHHHHCCCCEEEEECCCCCC
QGQSSRVELRVYETGQGSMLLGKAYYVTSESLLPVVADKFCSDFMKMLTGRGDFFLSTLA
CCCCCEEEEEEEECCCCCEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH
FVSQSRNGQKDIWAVRPTGRDLRQLTAVQGIALSPSWSPDGRYVIFSHIGERSHALGVWD
HHHHCCCCCCCEEEECCCCHHHHHHHHHCCEEECCCCCCCCCEEEEEECCCCCCEEEHHH
RINNRTQLIRFPGNTVIGPTFLPDNRVAVSLAVNGNPDIFLLNHIFKKQKVLEQSWGIDV
HCCCCEEEEECCCCEEECCEECCCCCEEEEEEECCCCCEEEHHHHHHHHHHHHHHCCCCC
SPSLDATGKKMAFVSSRLGNPNIFLKDLDSGSVRRISREGKYNTSPDISPDGTLIVYSRR
CCCCCCCCCEEEEHHHCCCCCCEEEEECCCCCEEHHHCCCCCCCCCCCCCCCEEEEEEEC
TGDGHRIFVHDLVTGREKQITFGPGNDEMPSFAPDSYFIAFASNRSGKYKVYLTTRHGGT
CCCCCEEEEEEECCCCCCEEEECCCCCCCCCCCCCCEEEEEECCCCCEEEEEEEEECCCC
PKMVDTGSHDASFPAWGKLSD
CCEEECCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA