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The map label for this gene is ywhC [H]

Identifier: 78358647

GI number: 78358647

Start: 3568693

End: 3569367

Strand: Reverse

Name: ywhC [H]

Synonym: Dde_3608

Alternate gene names: 78358647

Gene position: 3569367-3568693 (Counterclockwise)

Preceding gene: 78358648

Following gene: 78358646

Centisome position: 95.69

GC content: 58.67

Gene sequence:

>675_bases
ATGTTTGACATTGATTTCGCACAGAGCGTTCAGCGCATCGCCGTGGCCTTCGTGCCCATGATGCTCGGCATGGTCTGCCA
TGAGGTGGCCCACGGATGGGCAGCGTGGCGCATGGGCGACCCCACGGCCAGAGCGCAGGGGCGGCTTACCCTCAATCCGC
TGGTGCACCTTGACCCCATGGGTTCGCTCATGTTTGTGATCACGGCGCTCACCAGCCCATTTGTGTTGGGCTGGGCACGT
CCGGTGCCCGTCGATGCACGCTGGTTCCGCAAGCCTTCCAGAGATATGATGCTGGTCTCCTTTGCGGGGCCGTGTACCAA
TTTCATACTGGCGGTCATGTTTGCCGTGCTGCTCAAGGTGCTGGTGCATGTACTGCCCCACCAGATGCAGCAGGGAATTT
TCTTTGAGTTTTTTCTGAACATGTCGGCCATAGGCATATGGATAAATTTCACGCTTGGATGGTTTAACCTGATTCCCGTA
CCGCCGCTGGACGGAAGTCATATCCTTGCGGGACTGCTGCCGCCCGCGCTGGCCCGGCAGTACCATCAGATAGGCCGTTA
CGGCATCATCGTGGTTTTGATTCTGCTTGCAAGCGGCATACTGGGCCGCGTGCTGTGGCCGCTTGTGGATGGTTCCGCCC
GTGTGGTCACTTCCATGCTCGGGCTTGCCATCTGA

Upstream 100 bases:

>100_bases
GCGGGGCGCCTGTTTTTGTGGCGTGGTGCCGCCGCAGGCCGCCGTATGCGCGGCCTTTTTCTTGCTCTCCCTGTCGCTTC
GTGATAGCCGCAAGACGCAT

Downstream 100 bases:

>100_bases
TCATCTTATCCGGAGGAACATTGAAATGAGCAATAATCGCACTGTTTCGGGCATGCGTCCCACCGGCGCACTGCACCTTG
GCCACTACTTCGGCGTGCTG

Product: M50 family peptidase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 224; Mature: 224

Protein sequence:

>224_residues
MFDIDFAQSVQRIAVAFVPMMLGMVCHEVAHGWAAWRMGDPTARAQGRLTLNPLVHLDPMGSLMFVITALTSPFVLGWAR
PVPVDARWFRKPSRDMMLVSFAGPCTNFILAVMFAVLLKVLVHVLPHQMQQGIFFEFFLNMSAIGIWINFTLGWFNLIPV
PPLDGSHILAGLLPPALARQYHQIGRYGIIVVLILLASGILGRVLWPLVDGSARVVTSMLGLAI

Sequences:

>Translated_224_residues
MFDIDFAQSVQRIAVAFVPMMLGMVCHEVAHGWAAWRMGDPTARAQGRLTLNPLVHLDPMGSLMFVITALTSPFVLGWAR
PVPVDARWFRKPSRDMMLVSFAGPCTNFILAVMFAVLLKVLVHVLPHQMQQGIFFEFFLNMSAIGIWINFTLGWFNLIPV
PPLDGSHILAGLLPPALARQYHQIGRYGIIVVLILLASGILGRVLWPLVDGSARVVTSMLGLAI
>Mature_224_residues
MFDIDFAQSVQRIAVAFVPMMLGMVCHEVAHGWAAWRMGDPTARAQGRLTLNPLVHLDPMGSLMFVITALTSPFVLGWAR
PVPVDARWFRKPSRDMMLVSFAGPCTNFILAVMFAVLLKVLVHVLPHQMQQGIFFEFFLNMSAIGIWINFTLGWFNLIPV
PPLDGSHILAGLLPPALARQYHQIGRYGIIVVLILLASGILGRVLWPLVDGSARVVTSMLGLAI

Specific function: Unknown

COG id: COG1994

COG function: function code R; Zn-dependent proteases

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M50B family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008915 [H]

Pfam domain/function: PF02163 Peptidase_M50 [H]

EC number: NA

Molecular weight: Translated: 24770; Mature: 24770

Theoretical pI: Translated: 9.95; Mature: 9.95

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
5.8 %Met     (Translated Protein)
6.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
5.8 %Met     (Mature Protein)
6.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFDIDFAQSVQRIAVAFVPMMLGMVCHEVAHGWAAWRMGDPTARAQGRLTLNPLVHLDPM
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCEEECCCEEECCC
GSLMFVITALTSPFVLGWARPVPVDARWFRKPSRDMMLVSFAGPCTNFILAVMFAVLLKV
HHHHHHHHHHHCHHHHCCCCCCCCCHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHHHHH
LVHVLPHQMQQGIFFEFFLNMSAIGIWINFTLGWFNLIPVPPLDGSHILAGLLPPALARQ
HHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEHHHCCCCCCCCCCCHHHHHHCCHHHHHH
YHQIGRYGIIVVLILLASGILGRVLWPLVDGSARVVTSMLGLAI
HHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCC
>Mature Secondary Structure
MFDIDFAQSVQRIAVAFVPMMLGMVCHEVAHGWAAWRMGDPTARAQGRLTLNPLVHLDPM
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCEEECCCEEECCC
GSLMFVITALTSPFVLGWARPVPVDARWFRKPSRDMMLVSFAGPCTNFILAVMFAVLLKV
HHHHHHHHHHHCHHHHCCCCCCCCCHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHHHHH
LVHVLPHQMQQGIFFEFFLNMSAIGIWINFTLGWFNLIPVPPLDGSHILAGLLPPALARQ
HHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEHHHCCCCCCCCCCCHHHHHHCCHHHHHH
YHQIGRYGIIVVLILLASGILGRVLWPLVDGSARVVTSMLGLAI
HHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9353933; 9384377 [H]