BacMap

Definition	Desulfovibrio desulfuricans subsp. desulfuricans str. G20 chromosome, complete genome.
Accession	NC_007519
Length	3,730,232

Click here to switch to the map view.

The map label for this gene is phnL [H]

Identifier: 78358373

GI number: 78358373

Start: 3317742

End: 3318440

Strand: Direct

Name: phnL [H]

Synonym: Dde_3333

Alternate gene names: 78358373

Gene position: 3317742-3318440 (Clockwise)

Preceding gene: 78358372

Following gene: 78358374

Centisome position: 88.94

GC content: 60.09

Gene sequence:

>699_bases
ATGACTGTAATGCTGGACGTGCAGAACGTGTGCAAAACATTCACCCTGCATAATCAGGGAGGAACACACATCGCTGTCTT
CAACAATCTTTCACTTCAGGTGCGGGCCGGAGAGTGCGTGGCGCTTTCCGGCCGGTCCGGTGCGGGCAAATCCACCCTGC
TGCGCTCGCTGTATGCAAACTACAAACCCACAGCCGGCTCCATCAGCGTGCTGCACCGCGGCACCATGGTGGATATTGTC
CCGGCCCCGCCGCGCAAGGTGCTGGAAATCCGCAAATACACCATAGGCTATGTCAGCCAGTTTCTGCGCGTCATTCCGCG
CGTTACCGCACTGGATATAGTGGCGGCCGCCCGCAAAGAAGTGACGGGCCATACGGCAGAAGCCCGGAAACAGGCAGCCG
AACTGCTGGAGCGCATGAATATTCCGCGCAGACTGTGGGACATCGCACCCGCCACGTTTTCCGGCGGCGAACAGCAGCGC
GTGAACATCGCACGGGGATTTGCCGTGCCCTACCCCGTGCTGCTGCTGGACGAGCCCACGGCATCGCTGGACGGCGCCAA
CAAGCAGATAGTGACAGAGCTGATACATGAGGCAAAGGCACGCGGAACCGCCGTTGTGGGCATCTTTCATGATGACGACG
TGCGCGGTGCCGTGGCCGACCGTGTTTTTGACATGCAGACCATGGAGATGGCGGCATGA

Upstream 100 bases:

>100_bases
TGCTGGACGACCCGCACCACCACTACACCCAGCTGCTGGTTTCTTCCATCCTGCAGGTCTGACCCGCAACCCTTTTCACA
TCATTCACAGGAACTGATTC

Downstream 100 bases:

>100_bases
CCGGAGAAGTCATATTCACCAACGCCAATGTGGTCACCCCGCAGGGAACCATATACGGCACCGTTGTCACCCGGGGCGAA
ACCATTGCCGCCGTGGAAGA

Product: ATPase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 232; Mature: 231

Protein sequence:

>232_residues
MTVMLDVQNVCKTFTLHNQGGTHIAVFNNLSLQVRAGECVALSGRSGAGKSTLLRSLYANYKPTAGSISVLHRGTMVDIV
PAPPRKVLEIRKYTIGYVSQFLRVIPRVTALDIVAAARKEVTGHTAEARKQAAELLERMNIPRRLWDIAPATFSGGEQQR
VNIARGFAVPYPVLLLDEPTASLDGANKQIVTELIHEAKARGTAVVGIFHDDDVRGAVADRVFDMQTMEMAA

Sequences:

>Translated_232_residues
MTVMLDVQNVCKTFTLHNQGGTHIAVFNNLSLQVRAGECVALSGRSGAGKSTLLRSLYANYKPTAGSISVLHRGTMVDIV
PAPPRKVLEIRKYTIGYVSQFLRVIPRVTALDIVAAARKEVTGHTAEARKQAAELLERMNIPRRLWDIAPATFSGGEQQR
VNIARGFAVPYPVLLLDEPTASLDGANKQIVTELIHEAKARGTAVVGIFHDDDVRGAVADRVFDMQTMEMAA
>Mature_231_residues
TVMLDVQNVCKTFTLHNQGGTHIAVFNNLSLQVRAGECVALSGRSGAGKSTLLRSLYANYKPTAGSISVLHRGTMVDIVP
APPRKVLEIRKYTIGYVSQFLRVIPRVTALDIVAAARKEVTGHTAEARKQAAELLERMNIPRRLWDIAPATFSGGEQQRV
NIARGFAVPYPVLLLDEPTASLDGANKQIVTELIHEAKARGTAVVGIFHDDDVRGAVADRVFDMQTMEMAA

Specific function: Part of the binding-protein-dependent transport system for alkylphosphonates. Probably responsible for energy coupling to the transport system [H]

COG id: COG4778

COG function: function code P; ABC-type phosphonate transport system, ATPase component

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI42741659, Length=189, Percent_Identity=33.8624338624339, Blast_Score=72, Evalue=6e-13,
Organism=Homo sapiens, GI156105685, Length=235, Percent_Identity=30.6382978723404, Blast_Score=70, Evalue=1e-12,
Organism=Escherichia coli, GI1790534, Length=223, Percent_Identity=62.780269058296, Blast_Score=276, Evalue=9e-76,
Organism=Escherichia coli, GI87081834, Length=210, Percent_Identity=33.3333333333333, Blast_Score=103, Evalue=1e-23,
Organism=Escherichia coli, GI1787105, Length=235, Percent_Identity=32.3404255319149, Blast_Score=102, Evalue=2e-23,
Organism=Escherichia coli, GI1786703, Length=197, Percent_Identity=35.5329949238579, Blast_Score=97, Evalue=1e-21,
Organism=Escherichia coli, GI1787029, Length=221, Percent_Identity=33.9366515837104, Blast_Score=94, Evalue=6e-21,
Organism=Escherichia coli, GI1786398, Length=220, Percent_Identity=32.2727272727273, Blast_Score=94, Evalue=6e-21,
Organism=Escherichia coli, GI1787089, Length=208, Percent_Identity=33.6538461538462, Blast_Score=94, Evalue=7e-21,
Organism=Escherichia coli, GI1789891, Length=205, Percent_Identity=34.6341463414634, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI1787759, Length=232, Percent_Identity=34.9137931034483, Blast_Score=92, Evalue=4e-20,
Organism=Escherichia coli, GI1788225, Length=235, Percent_Identity=33.6170212765957, Blast_Score=91, Evalue=8e-20,
Organism=Escherichia coli, GI1788761, Length=232, Percent_Identity=34.9137931034483, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI1789032, Length=250, Percent_Identity=29.2, Blast_Score=85, Evalue=4e-18,
Organism=Escherichia coli, GI1788644, Length=212, Percent_Identity=32.5471698113208, Blast_Score=84, Evalue=7e-18,
Organism=Escherichia coli, GI48994997, Length=204, Percent_Identity=32.3529411764706, Blast_Score=83, Evalue=1e-17,
Organism=Escherichia coli, GI1789672, Length=229, Percent_Identity=31.8777292576419, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI1790544, Length=234, Percent_Identity=30.3418803418803, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI87081791, Length=223, Percent_Identity=30.0448430493274, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1789873, Length=225, Percent_Identity=29.7777777777778, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI48995001, Length=203, Percent_Identity=29.064039408867, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1787758, Length=201, Percent_Identity=29.3532338308458, Blast_Score=76, Evalue=2e-15,
Organism=Escherichia coli, GI1786345, Length=217, Percent_Identity=29.9539170506912, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1788472, Length=214, Percent_Identity=27.5700934579439, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1789962, Length=205, Percent_Identity=28.2926829268293, Blast_Score=74, Evalue=9e-15,
Organism=Escherichia coli, GI1788450, Length=214, Percent_Identity=31.3084112149533, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1790467, Length=225, Percent_Identity=29.3333333333333, Blast_Score=73, Evalue=1e-14,
Organism=Escherichia coli, GI1786872, Length=223, Percent_Identity=30.0448430493274, Blast_Score=73, Evalue=1e-14,
Organism=Escherichia coli, GI1789991, Length=226, Percent_Identity=26.1061946902655, Blast_Score=73, Evalue=1e-14,
Organism=Escherichia coli, GI1787164, Length=199, Percent_Identity=34.1708542713568, Blast_Score=73, Evalue=1e-14,
Organism=Escherichia coli, GI48994883, Length=244, Percent_Identity=29.5081967213115, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1788506, Length=219, Percent_Identity=30.1369863013699, Blast_Score=71, Evalue=5e-14,
Organism=Escherichia coli, GI145693107, Length=230, Percent_Identity=31.304347826087, Blast_Score=71, Evalue=6e-14,
Organism=Escherichia coli, GI1787112, Length=203, Percent_Identity=30.5418719211823, Blast_Score=71, Evalue=8e-14,
Organism=Escherichia coli, GI1790190, Length=214, Percent_Identity=28.0373831775701, Blast_Score=70, Evalue=9e-14,
Organism=Escherichia coli, GI1787500, Length=205, Percent_Identity=27.8048780487805, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI1790525, Length=193, Percent_Identity=29.5336787564767, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1787712, Length=223, Percent_Identity=26.457399103139, Blast_Score=68, Evalue=4e-13,
Organism=Escherichia coli, GI1786319, Length=213, Percent_Identity=29.1079812206573, Blast_Score=68, Evalue=4e-13,
Organism=Escherichia coli, GI1788897, Length=231, Percent_Identity=25.5411255411255, Blast_Score=68, Evalue=4e-13,
Organism=Escherichia coli, GI87081709, Length=228, Percent_Identity=28.5087719298246, Blast_Score=67, Evalue=7e-13,
Organism=Escherichia coli, GI1789593, Length=199, Percent_Identity=30.1507537688442, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1788210, Length=218, Percent_Identity=27.0642201834862, Blast_Score=65, Evalue=3e-12,
Organism=Escherichia coli, GI1788165, Length=224, Percent_Identity=27.6785714285714, Blast_Score=64, Evalue=6e-12,
Organism=Escherichia coli, GI1787143, Length=216, Percent_Identity=29.1666666666667, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1787370, Length=202, Percent_Identity=31.6831683168317, Blast_Score=63, Evalue=2e-11,
Organism=Escherichia coli, GI1786253, Length=166, Percent_Identity=30.1204819277108, Blast_Score=62, Evalue=3e-11,
Organism=Escherichia coli, GI87082268, Length=209, Percent_Identity=28.2296650717703, Blast_Score=62, Evalue=5e-11,
Organism=Escherichia coli, GI87081782, Length=180, Percent_Identity=30, Blast_Score=61, Evalue=6e-11,
Organism=Caenorhabditis elegans, GI17558664, Length=221, Percent_Identity=28.9592760180996, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI71984940, Length=201, Percent_Identity=32.3383084577114, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI71992285, Length=197, Percent_Identity=27.9187817258883, Blast_Score=69, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI115533592, Length=189, Percent_Identity=31.2169312169312, Blast_Score=68, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI17569145, Length=214, Percent_Identity=30.8411214953271, Blast_Score=66, Evalue=1e-11,
Organism=Saccharomyces cerevisiae, GI6323217, Length=195, Percent_Identity=29.2307692307692, Blast_Score=66, Evalue=4e-12,
Organism=Drosophila melanogaster, GI24659289, Length=190, Percent_Identity=30.5263157894737, Blast_Score=68, Evalue=5e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593
- InterPro:   IPR012701 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 25249; Mature: 25117

Theoretical pI: Translated: 9.72; Mature: 9.72

Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTVMLDVQNVCKTFTLHNQGGTHIAVFNNLSLQVRAGECVALSGRSGAGKSTLLRSLYAN
CEEEEEHHHHHHHEEEECCCCCEEEEEECCEEEEECCCEEEECCCCCCCHHHHHHHHHHC
YKPTAGSISVLHRGTMVDIVPAPPRKVLEIRKYTIGYVSQFLRVIPRVTALDIVAAARKE
CCCCCCCEEEEECCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
VTGHTAEARKQAAELLERMNIPRRLWDIAPATFSGGEQQRVNIARGFAVPYPVLLLDEPT
HCCCHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCCCHHEEEEECCCCCCCCEEEECCCC
ASLDGANKQIVTELIHEAKARGTAVVGIFHDDDVRGAVADRVFDMQTMEMAA
CCCCCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TVMLDVQNVCKTFTLHNQGGTHIAVFNNLSLQVRAGECVALSGRSGAGKSTLLRSLYAN
EEEEEHHHHHHHEEEECCCCCEEEEEECCEEEEECCCEEEECCCCCCCHHHHHHHHHHC
YKPTAGSISVLHRGTMVDIVPAPPRKVLEIRKYTIGYVSQFLRVIPRVTALDIVAAARKE
CCCCCCCEEEEECCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
VTGHTAEARKQAAELLERMNIPRRLWDIAPATFSGGEQQRVNIARGFAVPYPVLLLDEPT
HCCCHHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCCCHHEEEEECCCCCCCCEEEECCCC
ASLDGANKQIVTELIHEAKARGTAVVGIFHDDDVRGAVADRVFDMQTMEMAA
CCCCCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2155230; 1840580; 7610040; 9278503 [H]