| Definition | Desulfovibrio desulfuricans subsp. desulfuricans str. G20 chromosome, complete genome. |
|---|---|
| Accession | NC_007519 |
| Length | 3,730,232 |
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The map label for this gene is phnK
Identifier: 78358372
GI number: 78358372
Start: 3316849
End: 3317703
Strand: Direct
Name: phnK
Synonym: Dde_3332
Alternate gene names: 78358372
Gene position: 3316849-3317703 (Clockwise)
Preceding gene: 78358371
Following gene: 78358373
Centisome position: 88.92
GC content: 62.81
Gene sequence:
>855_bases ATGGATAATCTGCTCAGCGTTTCCGGCCGTTTTCCGGCCGCACGGAATATACCCGCACCCGGCATTCCCGCAGCGCATTG CGAAGAAAATCCGCTTCTCAGCGTCAAAGGGCTGAGCAGATATTACGGAGACCGCGCAGGCTGCCTTGATGTCTCCTTTG ATCTCTACCCCGGCGAAATCATCGGCATTGTAGGCGAATCCGGCTCCGGCAAATCCACGCTGCTCAACTGCATTTCCGGC CGTCAGGCACCCACCTGCGGCTCGGTGCACTATCGCGGCAAGGACGGCACCCTGTGCAATGTGCACGCCGCGCCGGAGCA TATCCGCCGCATGCTCATGCGCACGGAGTGGGGATATGTGCACCAGAACCCCCGCGACGGCCTGCGGGGCAATGTGAGCG CGGGTGCCAACATCGGCGAACGGCTCATGGGCGTGGGCATGCGTCACTACGGCAACATCCGCCAGCGGTCGGCCACGTGG CTGGACCGTGTGGAAATTGCCCGCAACCGCATGGACGACCTGCCGCGCACCTTTTCCGGCGGCATGCAGCAGCGGCTGCA GATAGCACGCAATCTGGTATCTGCCCCGCGGCTTGTTTTTATGGATGAGCCCACCGGCGGGCTGGATGTTTCGGTACAGG CGCGCCTGCTGGACCTGCTGCGCGGGCTGGTGGCCGACATGGGACTGGCCGTGGTTATTGTGACGCATGATCTGGCAGTG GCCCGCATTCTGGCACACCGGCTCATGGTCATGTGTCAGGGGCAGGTGGTGGAGGCAGGTCTGACCGATCAGGTGCTGGA CGACCCGCACCACCACTACACCCAGCTGCTGGTTTCTTCCATCCTGCAGGTCTGA
Upstream 100 bases:
>100_bases TGCGCCGGACGCAGAGCGCAGGGGCACACCGGCGCCATGGCCGCGCCCTCTGCGCACCGTGAACCGGTGCCTGCATCCGG CCGGAAGGAGGAAGCCGACA
Downstream 100 bases:
>100_bases CCCGCAACCCTTTTCACATCATTCACAGGAACTGATTCATGACTGTAATGCTGGACGTGCAGAACGTGTGCAAAACATTC ACCCTGCATAATCAGGGAGG
Product: phosphonate C-P lyase system protein PhnK
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 284; Mature: 284
Protein sequence:
>284_residues MDNLLSVSGRFPAARNIPAPGIPAAHCEENPLLSVKGLSRYYGDRAGCLDVSFDLYPGEIIGIVGESGSGKSTLLNCISG RQAPTCGSVHYRGKDGTLCNVHAAPEHIRRMLMRTEWGYVHQNPRDGLRGNVSAGANIGERLMGVGMRHYGNIRQRSATW LDRVEIARNRMDDLPRTFSGGMQQRLQIARNLVSAPRLVFMDEPTGGLDVSVQARLLDLLRGLVADMGLAVVIVTHDLAV ARILAHRLMVMCQGQVVEAGLTDQVLDDPHHHYTQLLVSSILQV
Sequences:
>Translated_284_residues MDNLLSVSGRFPAARNIPAPGIPAAHCEENPLLSVKGLSRYYGDRAGCLDVSFDLYPGEIIGIVGESGSGKSTLLNCISG RQAPTCGSVHYRGKDGTLCNVHAAPEHIRRMLMRTEWGYVHQNPRDGLRGNVSAGANIGERLMGVGMRHYGNIRQRSATW LDRVEIARNRMDDLPRTFSGGMQQRLQIARNLVSAPRLVFMDEPTGGLDVSVQARLLDLLRGLVADMGLAVVIVTHDLAV ARILAHRLMVMCQGQVVEAGLTDQVLDDPHHHYTQLLVSSILQV >Mature_284_residues MDNLLSVSGRFPAARNIPAPGIPAAHCEENPLLSVKGLSRYYGDRAGCLDVSFDLYPGEIIGIVGESGSGKSTLLNCISG RQAPTCGSVHYRGKDGTLCNVHAAPEHIRRMLMRTEWGYVHQNPRDGLRGNVSAGANIGERLMGVGMRHYGNIRQRSATW LDRVEIARNRMDDLPRTFSGGMQQRLQIARNLVSAPRLVFMDEPTGGLDVSVQARLLDLLRGLVADMGLAVVIVTHDLAV ARILAHRLMVMCQGQVVEAGLTDQVLDDPHHHYTQLLVSSILQV
Specific function: Part of the binding-protein-dependent transport system for alkylphosphonates. Probably responsible for energy coupling to the transport system [H]
COG id: COG4107
COG function: function code P; ABC-type phosphonate transport system, ATPase component
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transporter domain [H]
Homologues:
Organism=Homo sapiens, GI21536376, Length=250, Percent_Identity=26, Blast_Score=78, Evalue=1e-14, Organism=Homo sapiens, GI45446740, Length=236, Percent_Identity=25.8474576271186, Blast_Score=77, Evalue=2e-14, Organism=Homo sapiens, GI47078218, Length=236, Percent_Identity=25.8474576271186, Blast_Score=77, Evalue=2e-14, Organism=Homo sapiens, GI116734710, Length=247, Percent_Identity=27.9352226720648, Blast_Score=76, Evalue=3e-14, Organism=Homo sapiens, GI153792144, Length=265, Percent_Identity=24.1509433962264, Blast_Score=75, Evalue=9e-14, Organism=Homo sapiens, GI171184400, Length=242, Percent_Identity=26.4462809917355, Blast_Score=74, Evalue=1e-13, Organism=Homo sapiens, GI105990541, Length=206, Percent_Identity=28.1553398058252, Blast_Score=69, Evalue=4e-12, Organism=Homo sapiens, GI46592898, Length=229, Percent_Identity=29.6943231441048, Blast_Score=68, Evalue=7e-12, Organism=Homo sapiens, GI46592956, Length=229, Percent_Identity=29.6943231441048, Blast_Score=68, Evalue=8e-12, Organism=Homo sapiens, GI46592915, Length=229, Percent_Identity=29.6943231441048, Blast_Score=68, Evalue=8e-12, Organism=Homo sapiens, GI46592964, Length=229, Percent_Identity=29.6943231441048, Blast_Score=68, Evalue=9e-12, Organism=Homo sapiens, GI46592971, Length=229, Percent_Identity=29.6943231441048, Blast_Score=68, Evalue=9e-12, Organism=Homo sapiens, GI46592978, Length=229, Percent_Identity=29.6943231441048, Blast_Score=68, Evalue=9e-12, Organism=Homo sapiens, GI27262624, Length=228, Percent_Identity=27.1929824561404, Blast_Score=67, Evalue=1e-11, Organism=Homo sapiens, GI27262626, Length=228, Percent_Identity=27.1929824561404, Blast_Score=67, Evalue=1e-11, Organism=Escherichia coli, GI48994997, Length=254, Percent_Identity=68.8976377952756, Blast_Score=348, Evalue=2e-97, Organism=Escherichia coli, GI1789962, Length=262, Percent_Identity=35.1145038167939, Blast_Score=149, Evalue=2e-37, Organism=Escherichia coli, GI1787500, Length=232, Percent_Identity=36.2068965517241, Blast_Score=141, Evalue=6e-35, Organism=Escherichia coli, GI1789963, Length=263, Percent_Identity=34.6007604562738, Blast_Score=138, Evalue=5e-34, Organism=Escherichia coli, GI48994883, Length=273, Percent_Identity=34.4322344322344, Blast_Score=137, Evalue=7e-34, Organism=Escherichia coli, GI145693107, Length=264, Percent_Identity=32.9545454545455, Blast_Score=132, Evalue=4e-32, Organism=Escherichia coli, GI1787758, Length=232, Percent_Identity=36.6379310344828, Blast_Score=125, Evalue=4e-30, Organism=Escherichia coli, GI1788506, Length=243, Percent_Identity=35.3909465020576, Blast_Score=121, Evalue=5e-29, Organism=Escherichia coli, GI87081791, Length=259, Percent_Identity=28.5714285714286, Blast_Score=117, Evalue=1e-27, Organism=Escherichia coli, GI1787759, Length=257, Percent_Identity=35.0194552529183, Blast_Score=114, Evalue=7e-27, Organism=Escherichia coli, GI1788761, Length=240, Percent_Identity=30.8333333333333, Blast_Score=112, Evalue=3e-26, Organism=Escherichia coli, GI1788225, Length=259, Percent_Identity=31.6602316602317, Blast_Score=110, Evalue=1e-25, Organism=Escherichia coli, GI1789672, Length=257, Percent_Identity=29.9610894941634, Blast_Score=109, Evalue=2e-25, Organism=Escherichia coli, GI1787029, Length=247, Percent_Identity=30.3643724696356, Blast_Score=108, Evalue=6e-25, Organism=Escherichia coli, GI1789891, Length=249, Percent_Identity=29.718875502008, Blast_Score=107, Evalue=1e-24, Organism=Escherichia coli, GI87081834, Length=199, Percent_Identity=36.1809045226131, Blast_Score=104, Evalue=6e-24, Organism=Escherichia coli, GI1789864, Length=254, Percent_Identity=28.740157480315, Blast_Score=103, Evalue=1e-23, Organism=Escherichia coli, GI1787089, Length=233, Percent_Identity=30.9012875536481, Blast_Score=102, Evalue=4e-23, Organism=Escherichia coli, GI1787548, Length=264, Percent_Identity=29.9242424242424, Blast_Score=101, Evalue=5e-23, Organism=Escherichia coli, GI1786872, Length=251, Percent_Identity=29.8804780876494, Blast_Score=101, Evalue=5e-23, Organism=Escherichia coli, GI1786398, Length=251, Percent_Identity=26.6932270916335, Blast_Score=99, Evalue=3e-22, Organism=Escherichia coli, GI1787105, Length=232, Percent_Identity=33.1896551724138, Blast_Score=98, Evalue=6e-22, Organism=Escherichia coli, GI1789873, Length=216, Percent_Identity=30.5555555555556, Blast_Score=97, Evalue=9e-22, Organism=Escherichia coli, GI1787547, Length=260, Percent_Identity=28.8461538461538, Blast_Score=96, Evalue=3e-21, Organism=Escherichia coli, GI1788644, Length=246, Percent_Identity=32.1138211382114, Blast_Score=94, Evalue=9e-21, Organism=Escherichia coli, GI1787370, Length=256, Percent_Identity=25, Blast_Score=94, Evalue=1e-20, Organism=Escherichia coli, GI1790525, Length=243, Percent_Identity=28.8065843621399, Blast_Score=92, Evalue=3e-20, Organism=Escherichia coli, GI1789890, Length=238, Percent_Identity=30.2521008403361, Blast_Score=92, Evalue=5e-20, Organism=Escherichia coli, GI1787792, Length=250, Percent_Identity=28.8, Blast_Score=91, Evalue=7e-20, Organism=Escherichia coli, GI1787164, Length=230, Percent_Identity=28.695652173913, Blast_Score=91, Evalue=9e-20, Organism=Escherichia coli, GI1789032, Length=251, Percent_Identity=28.6852589641434, Blast_Score=91, Evalue=1e-19, Organism=Escherichia coli, GI1786703, Length=206, Percent_Identity=33.9805825242718, Blast_Score=88, Evalue=6e-19, Organism=Escherichia coli, GI1790467, Length=248, Percent_Identity=26.2096774193548, Blast_Score=87, Evalue=2e-18, Organism=Escherichia coli, GI87081709, Length=243, Percent_Identity=24.2798353909465, Blast_Score=86, Evalue=2e-18, Organism=Escherichia coli, GI1790162, Length=256, Percent_Identity=26.171875, Blast_Score=84, Evalue=1e-17, Organism=Escherichia coli, GI1787712, Length=241, Percent_Identity=29.8755186721992, Blast_Score=83, Evalue=2e-17, Organism=Escherichia coli, GI1788450, Length=244, Percent_Identity=26.6393442622951, Blast_Score=82, Evalue=3e-17, Organism=Escherichia coli, GI1788210, Length=256, Percent_Identity=26.953125, Blast_Score=82, Evalue=5e-17, Organism=Escherichia coli, GI1789593, Length=245, Percent_Identity=27.7551020408163, Blast_Score=81, Evalue=8e-17, Organism=Escherichia coli, GI1786253, Length=216, Percent_Identity=29.6296296296296, Blast_Score=80, Evalue=1e-16, Organism=Escherichia coli, GI1788472, Length=267, Percent_Identity=27.3408239700375, Blast_Score=80, Evalue=2e-16, Organism=Escherichia coli, GI48995001, Length=228, Percent_Identity=27.6315789473684, Blast_Score=79, Evalue=3e-16, Organism=Escherichia coli, GI1786319, Length=232, Percent_Identity=28.0172413793103, Blast_Score=79, Evalue=4e-16, Organism=Escherichia coli, GI87081782, Length=236, Percent_Identity=27.1186440677966, Blast_Score=79, Evalue=5e-16, Organism=Escherichia coli, GI1790739, Length=236, Percent_Identity=32.2033898305085, Blast_Score=79, Evalue=5e-16, Organism=Escherichia coli, GI1790190, Length=216, Percent_Identity=26.8518518518519, Blast_Score=78, Evalue=8e-16, Organism=Escherichia coli, GI1790534, Length=227, Percent_Identity=29.9559471365639, Blast_Score=77, Evalue=1e-15, Organism=Escherichia coli, GI1790544, Length=253, Percent_Identity=28.0632411067194, Blast_Score=76, Evalue=3e-15, Organism=Escherichia coli, GI87082267, Length=249, Percent_Identity=25.3012048192771, Blast_Score=75, Evalue=7e-15, Organism=Escherichia coli, GI2367384, Length=228, Percent_Identity=27.6315789473684, Blast_Score=74, Evalue=1e-14, Organism=Escherichia coli, GI1788897, Length=213, Percent_Identity=25.8215962441315, Blast_Score=73, Evalue=2e-14, Organism=Escherichia coli, GI1789991, Length=214, Percent_Identity=27.1028037383178, Blast_Score=72, Evalue=3e-14, Organism=Escherichia coli, GI48994943, Length=239, Percent_Identity=27.1966527196653, Blast_Score=65, Evalue=3e-12, Organism=Escherichia coli, GI1786981, Length=230, Percent_Identity=30, Blast_Score=63, Evalue=3e-11, Organism=Caenorhabditis elegans, GI193208177, Length=241, Percent_Identity=29.045643153527, Blast_Score=86, Evalue=2e-17, Organism=Caenorhabditis elegans, GI115533608, Length=239, Percent_Identity=27.6150627615063, Blast_Score=77, Evalue=9e-15, Organism=Caenorhabditis elegans, GI193211017, Length=221, Percent_Identity=29.8642533936652, Blast_Score=76, Evalue=2e-14, Organism=Caenorhabditis elegans, GI193211015, Length=221, Percent_Identity=29.8642533936652, Blast_Score=76, Evalue=2e-14, Organism=Caenorhabditis elegans, GI71996809, Length=221, Percent_Identity=29.8642533936652, Blast_Score=76, Evalue=2e-14, Organism=Caenorhabditis elegans, GI193202349, Length=222, Percent_Identity=29.2792792792793, Blast_Score=76, Evalue=2e-14, Organism=Caenorhabditis elegans, GI115534520, Length=238, Percent_Identity=26.4705882352941, Blast_Score=72, Evalue=3e-13, Organism=Caenorhabditis elegans, GI71984940, Length=220, Percent_Identity=26.3636363636364, Blast_Score=71, Evalue=6e-13, Organism=Caenorhabditis elegans, GI17558664, Length=224, Percent_Identity=26.7857142857143, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI17510237, Length=252, Percent_Identity=23.015873015873, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI25146777, Length=230, Percent_Identity=28.2608695652174, Blast_Score=67, Evalue=8e-12, Organism=Caenorhabditis elegans, GI17543740, Length=238, Percent_Identity=23.9495798319328, Blast_Score=64, Evalue=1e-10, Organism=Saccharomyces cerevisiae, GI6322640, Length=267, Percent_Identity=27.3408239700375, Blast_Score=69, Evalue=8e-13, Organism=Saccharomyces cerevisiae, GI6324498, Length=198, Percent_Identity=27.2727272727273, Blast_Score=67, Evalue=4e-12, Organism=Drosophila melanogaster, GI24643674, Length=224, Percent_Identity=25, Blast_Score=79, Evalue=4e-15, Organism=Drosophila melanogaster, GI221512771, Length=228, Percent_Identity=26.7543859649123, Blast_Score=75, Evalue=6e-14, Organism=Drosophila melanogaster, GI23397593, Length=247, Percent_Identity=29.5546558704453, Blast_Score=74, Evalue=8e-14, Organism=Drosophila melanogaster, GI28574150, Length=228, Percent_Identity=25.8771929824561, Blast_Score=70, Evalue=1e-12, Organism=Drosophila melanogaster, GI116007328, Length=228, Percent_Identity=25.8771929824561, Blast_Score=70, Evalue=1e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 - InterPro: IPR012700 - InterPro: IPR013563 [H]
Pfam domain/function: PF00005 ABC_tran; PF08352 oligo_HPY [H]
EC number: NA
Molecular weight: Translated: 31004; Mature: 31004
Theoretical pI: Translated: 8.16; Mature: 8.16
Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.1 %Cys (Translated Protein) 3.9 %Met (Translated Protein) 6.0 %Cys+Met (Translated Protein) 2.1 %Cys (Mature Protein) 3.9 %Met (Mature Protein) 6.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDNLLSVSGRFPAARNIPAPGIPAAHCEENPLLSVKGLSRYYGDRAGCLDVSFDLYPGEI CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEHHHHHHHHCCCCCEEEEEEECCCCEE IGIVGESGSGKSTLLNCISGRQAPTCGSVHYRGKDGTLCNVHAAPEHIRRMLMRTEWGYV EEEECCCCCCHHHHHHHHCCCCCCCCCCEEEECCCCCEEEECCCHHHHHHHHHHHCCCCC HQNPRDGLRGNVSAGANIGERLMGVGMRHYGNIRQRSATWLDRVEIARNRMDDLPRTFSG CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCHHHHH GMQQRLQIARNLVSAPRLVFMDEPTGGLDVSVQARLLDLLRGLVADMGLAVVIVTHDLAV HHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCEEEEEEHHHHHH ARILAHRLMVMCQGQVVEAGLTDQVLDDPHHHYTQLLVSSILQV HHHHHHHHHHHHCCCCEECCCCHHHHCCCHHHHHHHHHHHHHCC >Mature Secondary Structure MDNLLSVSGRFPAARNIPAPGIPAAHCEENPLLSVKGLSRYYGDRAGCLDVSFDLYPGEI CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEHHHHHHHHCCCCCEEEEEEECCCCEE IGIVGESGSGKSTLLNCISGRQAPTCGSVHYRGKDGTLCNVHAAPEHIRRMLMRTEWGYV EEEECCCCCCHHHHHHHHCCCCCCCCCCEEEECCCCCEEEECCCHHHHHHHHHHHCCCCC HQNPRDGLRGNVSAGANIGERLMGVGMRHYGNIRQRSATWLDRVEIARNRMDDLPRTFSG CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCHHHHH GMQQRLQIARNLVSAPRLVFMDEPTGGLDVSVQARLLDLLRGLVADMGLAVVIVTHDLAV HHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCEEEEEEHHHHHH ARILAHRLMVMCQGQVVEAGLTDQVLDDPHHHYTQLLVSSILQV HHHHHHHHHHHHCCCCEECCCCHHHHCCCHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 2155230; 1840580; 7610040; 9278503 [H]