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The map label for this gene is cydB [H]

Identifier: 78358245

GI number: 78358245

Start: 3193711

End: 3194736

Strand: Direct

Name: cydB [H]

Synonym: Dde_3205

Alternate gene names: 78358245

Gene position: 3193711-3194736 (Clockwise)

Preceding gene: 78358244

Following gene: 78358248

Centisome position: 85.62

GC content: 57.89

Gene sequence:

>1026_bases
ATGTTGGAAACCACATGGTTTGTTATCTGGGGTGTTCTCTGGGCCATCTACTTCATGCTGGACGGGTTCGATCTCGGCAT
GGGTACGCTGCTGCCCTTTATCACAAAAAATGAAACTGAACGGCGCACCATCTACAATGCGGCCGGTCCTTTCTGGGACG
GCAACGAAGTGTGGCTGATCACGGCCGGCGGGGTTACCTTCGCCGCATTTCCCAAAGCGTATGCGGTGATGTTCAGCGCG
CTGTATGCCCCGCTGTTCATTCTGCTTTTCGCACTTATCTTCCGCGCAGTCTCGTTTGAGTTCCGCAACAAGATAGATTC
CGACGGCTGGCGCAAGGTATGGGACGTGTTCCAGTTCCTCGGCAGCGTCGTACCCGCCCTGCTGCTGGGCGTGGCCTTTG
CCAACCTGTTCATGGGCATTCCCGTGGATGCGGACGGCGTGTACCACGGCACGCTGTTCACGCTGCTTAATCCTTACGGA
CTGCTGGGCGGCGTGCTGTTTGTGCTTATGTTTGCCGTACACGGCGCACTGTGGCTGGCCATCAAGTCCACCGGCATGAT
TCATGACCGCGCCATCGCCGCCGCACGGGGTCTGTGGCCCTATCTGCTCATCGCTGCGGTGGCCTTTCTGGCCGCCACGG
CCGTATACACCGACCTGTACAGCAACTACCTCAGCTTCCCGCCGCTGCTGGTGGTGCTTTTCCTCGCCGTGGGCATGATG
CTCACCACCCGCTTCTTCATTCACGGAGAATCGGCCGGAATGGCATGGATATGCAGTTCTGTGACCATAGTGTGCGTGAC
GCTGTTCGGTGTGCTGGGCATGTACCCCGCACTCATTCCGTCCAGCCTTGATCCGGCTTACAGCGTGACCATAGCCAATG
CGGCATCCAGTCCGCTGACGCTCAAGATCATGCTGGGTGTTTCGCTGACCTGTGTACCTGTGGTCATAGGCTATCAGGCA
TGGGTGTTCTCGGTGTTCTCTTTCAAGATCACCGACAAGGATCTGGAATCGCCCCACGCCTACTAG

Upstream 100 bases:

>100_bases
CTCGACATTTATCTGTTGAAGAAATACGCCAGGAAAGGCCCCCAGCCCGCCTAGGCGGAAGGGATAACCTGAAGAACCAG
TACACCAGAGGAATTAGAAT

Downstream 100 bases:

>100_bases
TCCGGTACCTTTAAACAACAGAACGCCCCGCACCGCGGGGCGTTTTTTTATGCCCGCACGCACCCGATACAGAAAAGCAC
GCAGGCATACAGGACAGCAC

Product: cytochrome d ubiquinol oxidase subunit II

Products: NA

Alternate protein names: Cytochrome d ubiquinol oxidase subunit II [H]

Number of amino acids: Translated: 341; Mature: 341

Protein sequence:

>341_residues
MLETTWFVIWGVLWAIYFMLDGFDLGMGTLLPFITKNETERRTIYNAAGPFWDGNEVWLITAGGVTFAAFPKAYAVMFSA
LYAPLFILLFALIFRAVSFEFRNKIDSDGWRKVWDVFQFLGSVVPALLLGVAFANLFMGIPVDADGVYHGTLFTLLNPYG
LLGGVLFVLMFAVHGALWLAIKSTGMIHDRAIAAARGLWPYLLIAAVAFLAATAVYTDLYSNYLSFPPLLVVLFLAVGMM
LTTRFFIHGESAGMAWICSSVTIVCVTLFGVLGMYPALIPSSLDPAYSVTIANAASSPLTLKIMLGVSLTCVPVVIGYQA
WVFSVFSFKITDKDLESPHAY

Sequences:

>Translated_341_residues
MLETTWFVIWGVLWAIYFMLDGFDLGMGTLLPFITKNETERRTIYNAAGPFWDGNEVWLITAGGVTFAAFPKAYAVMFSA
LYAPLFILLFALIFRAVSFEFRNKIDSDGWRKVWDVFQFLGSVVPALLLGVAFANLFMGIPVDADGVYHGTLFTLLNPYG
LLGGVLFVLMFAVHGALWLAIKSTGMIHDRAIAAARGLWPYLLIAAVAFLAATAVYTDLYSNYLSFPPLLVVLFLAVGMM
LTTRFFIHGESAGMAWICSSVTIVCVTLFGVLGMYPALIPSSLDPAYSVTIANAASSPLTLKIMLGVSLTCVPVVIGYQA
WVFSVFSFKITDKDLESPHAY
>Mature_341_residues
MLETTWFVIWGVLWAIYFMLDGFDLGMGTLLPFITKNETERRTIYNAAGPFWDGNEVWLITAGGVTFAAFPKAYAVMFSA
LYAPLFILLFALIFRAVSFEFRNKIDSDGWRKVWDVFQFLGSVVPALLLGVAFANLFMGIPVDADGVYHGTLFTLLNPYG
LLGGVLFVLMFAVHGALWLAIKSTGMIHDRAIAAARGLWPYLLIAAVAFLAATAVYTDLYSNYLSFPPLLVVLFLAVGMM
LTTRFFIHGESAGMAWICSSVTIVCVTLFGVLGMYPALIPSSLDPAYSVTIANAASSPLTLKIMLGVSLTCVPVVIGYQA
WVFSVFSFKITDKDLESPHAY

Specific function: Cytochrome D Terminal Oxidase Complex Is The Component Of The Aerobic Respiratory Chain Of E.Coli That Predominates When Cells Are Grown At Low Aeration. [C]

COG id: COG1294

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 2

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786954, Length=368, Percent_Identity=36.4130434782609, Blast_Score=222, Evalue=2e-59,
Organism=Escherichia coli, GI1787213, Length=366, Percent_Identity=32.5136612021858, Blast_Score=198, Evalue=5e-52,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003317 [H]

Pfam domain/function: PF02322 Cyto_ox_2 [H]

EC number: 1.10.3.-

Molecular weight: Translated: 37431; Mature: 37431

Theoretical pI: Translated: 5.99; Mature: 5.99

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLETTWFVIWGVLWAIYFMLDGFDLGMGTLLPFITKNETERRTIYNAAGPFWDGNEVWLI
CCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHHHHCCCCCCCCCEEEEE
TAGGVTFAAFPKAYAVMFSALYAPLFILLFALIFRAVSFEFRNKIDSDGWRKVWDVFQFL
EECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
GSVVPALLLGVAFANLFMGIPVDADGVYHGTLFTLLNPYGLLGGVLFVLMFAVHGALWLA
HHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH
IKSTGMIHDRAIAAARGLWPYLLIAAVAFLAATAVYTDLYSNYLSFPPLLVVLFLAVGMM
HHCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
LTTRFFIHGESAGMAWICSSVTIVCVTLFGVLGMYPALIPSSLDPAYSVTIANAASSPLT
HHHHHHEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCEE
LKIMLGVSLTCVPVVIGYQAWVFSVFSFKITDKDLESPHAY
EEEEECCCHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCC
>Mature Secondary Structure
MLETTWFVIWGVLWAIYFMLDGFDLGMGTLLPFITKNETERRTIYNAAGPFWDGNEVWLI
CCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHHHHCCCCCCCCCEEEEE
TAGGVTFAAFPKAYAVMFSALYAPLFILLFALIFRAVSFEFRNKIDSDGWRKVWDVFQFL
EECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
GSVVPALLLGVAFANLFMGIPVDADGVYHGTLFTLLNPYGLLGGVLFVLMFAVHGALWLA
HHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH
IKSTGMIHDRAIAAARGLWPYLLIAAVAFLAATAVYTDLYSNYLSFPPLLVVLFLAVGMM
HHCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
LTTRFFIHGESAGMAWICSSVTIVCVTLFGVLGMYPALIPSSLDPAYSVTIANAASSPLT
HHHHHHEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCEE
LKIMLGVSLTCVPVVIGYQAWVFSVFSFKITDKDLESPHAY
EEEEECCCHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8969509; 9384377 [H]