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The map label for this gene is cydA [H]

Identifier: 78358244

GI number: 78358244

Start: 3192360

End: 3193664

Strand: Direct

Name: cydA [H]

Synonym: Dde_3204

Alternate gene names: 78358244

Gene position: 3192360-3193664 (Clockwise)

Preceding gene: 78358243

Following gene: 78358245

Centisome position: 85.58

GC content: 55.94

Gene sequence:

>1305_bases
ATGGATGTCGTCCTGTTGTCACGGCTGCAATTTGCCATAGCCGTTTTTTTCCACTTCATTTTCGTGCCGCTTACTCTGGG
CCTTTCCGTGATGCTTGCCATCATGGAAACCATGTACGTGCGCAGCGGCAATGAAGTGTACAAACGTATGGCCAAGTTCT
GGGGCAAGCTGTTCATCATCAACTTTGCACTGGGAGTTGTCACCGGCATCACGCTGGAATTCCAGTTCGGCACCAACTGG
TCGCGCTATTCCGAATATGTCGGCGACATTTTCGGTTCGCTGCTGGCCATCGAGGCGACCGTCGCTTTCTTCCTTGAATC
CACCTTTCTTGCCGTATGGCACTTCGGGTGGGAAAAAGTATCCAAAAAAGTTCACCTGTTCGCCATCTGGGCCGTGGCCA
TTGCCAGCAACATATCCGCCCTGTGGATCATCCTTGCCAACGGCTGGATGCAGAACCCCGTGGGCTATGTGCTGCGCAAC
GGCCGTGCAGAACTGGACAGCTTCTACGAAGTGCTGACCAACGTATTTGCGTGGGGCCAGTACTTCCACACCATTTTCGC
CTCATGGATGCTTGCCGGTTTCTTTGTGCTGGGTGTTTCCGCATGGCACATCATGCGCAAGAACGAGCTTGATTTCTTTA
ACCGCTCCTTCCGGCTGGGCGCAGTGTTTGCCCTGCTGTTCGCCGTGCTGGTGGCTGTACAGGGCCACAACCACGGCAAC
ACCGTGGCCAGACTGCAGCCGGCCAAACTGGCAGCCATGGAATCGCACTGGGAAACCAAGGCAGGCGCTCCCATGTACCT
GCTGGTACTGCCGGATCAGGAAAACGAAAAGAACGCCATCGAAGCCTTTGGCATTCCCAATGTGCTCTCGCTGCTGGCAT
TCAATGATCCCAATGCCGAAGTGCTGGGGCTGAAGGAATTCCCCAAGGAAGACCGTCCGCCCGTGCTGCTGACCTTCCTT
TCGTTCCGGCTTATGGTCGGTCTGGGTACGCTGTTCCCCATTCTGGCCGGTCTTGCATGGCTGTGGCGCAACAAACTGGA
ACAGAAGACATGGCTGCTCAAAGCCCTCATCTACACCATTCCGCTGCCGTACATCACCATCATGGCAGGCTGGAACGTGG
CAGAGGTGGGCCGCCAGCCGTGGATTGTCTACGGCATGATGCGCACATCAGACGCGGTGTCGCCGGTACCTGCCGCGTCA
GTGGCCACATCCGTCATCGCCATGGTGATCATCTATTCATTCCTCGGCATTCTCGACATTTATCTGTTGAAGAAATACGC
CAGGAAAGGCCCCCAGCCCGCCTAG

Upstream 100 bases:

>100_bases
AATAAAAGTTTGCCTGCTCTTCATGGAGCTGTTTTTTTCACCTTTAACCTTGGCGGCTGCGGCTTTACGCCACGACCCGC
AAACCGCAAAGGGGGCTCGT

Downstream 100 bases:

>100_bases
GCGGAAGGGATAACCTGAAGAACCAGTACACCAGAGGAATTAGAATATGTTGGAAACCACATGGTTTGTTATCTGGGGTG
TTCTCTGGGCCATCTACTTC

Product: cytochrome d ubiquinol oxidase subunit I

Products: NA

Alternate protein names: Cytochrome d ubiquinol oxidase subunit I [H]

Number of amino acids: Translated: 434; Mature: 434

Protein sequence:

>434_residues
MDVVLLSRLQFAIAVFFHFIFVPLTLGLSVMLAIMETMYVRSGNEVYKRMAKFWGKLFIINFALGVVTGITLEFQFGTNW
SRYSEYVGDIFGSLLAIEATVAFFLESTFLAVWHFGWEKVSKKVHLFAIWAVAIASNISALWIILANGWMQNPVGYVLRN
GRAELDSFYEVLTNVFAWGQYFHTIFASWMLAGFFVLGVSAWHIMRKNELDFFNRSFRLGAVFALLFAVLVAVQGHNHGN
TVARLQPAKLAAMESHWETKAGAPMYLLVLPDQENEKNAIEAFGIPNVLSLLAFNDPNAEVLGLKEFPKEDRPPVLLTFL
SFRLMVGLGTLFPILAGLAWLWRNKLEQKTWLLKALIYTIPLPYITIMAGWNVAEVGRQPWIVYGMMRTSDAVSPVPAAS
VATSVIAMVIIYSFLGILDIYLLKKYARKGPQPA

Sequences:

>Translated_434_residues
MDVVLLSRLQFAIAVFFHFIFVPLTLGLSVMLAIMETMYVRSGNEVYKRMAKFWGKLFIINFALGVVTGITLEFQFGTNW
SRYSEYVGDIFGSLLAIEATVAFFLESTFLAVWHFGWEKVSKKVHLFAIWAVAIASNISALWIILANGWMQNPVGYVLRN
GRAELDSFYEVLTNVFAWGQYFHTIFASWMLAGFFVLGVSAWHIMRKNELDFFNRSFRLGAVFALLFAVLVAVQGHNHGN
TVARLQPAKLAAMESHWETKAGAPMYLLVLPDQENEKNAIEAFGIPNVLSLLAFNDPNAEVLGLKEFPKEDRPPVLLTFL
SFRLMVGLGTLFPILAGLAWLWRNKLEQKTWLLKALIYTIPLPYITIMAGWNVAEVGRQPWIVYGMMRTSDAVSPVPAAS
VATSVIAMVIIYSFLGILDIYLLKKYARKGPQPA
>Mature_434_residues
MDVVLLSRLQFAIAVFFHFIFVPLTLGLSVMLAIMETMYVRSGNEVYKRMAKFWGKLFIINFALGVVTGITLEFQFGTNW
SRYSEYVGDIFGSLLAIEATVAFFLESTFLAVWHFGWEKVSKKVHLFAIWAVAIASNISALWIILANGWMQNPVGYVLRN
GRAELDSFYEVLTNVFAWGQYFHTIFASWMLAGFFVLGVSAWHIMRKNELDFFNRSFRLGAVFALLFAVLVAVQGHNHGN
TVARLQPAKLAAMESHWETKAGAPMYLLVLPDQENEKNAIEAFGIPNVLSLLAFNDPNAEVLGLKEFPKEDRPPVLLTFL
SFRLMVGLGTLFPILAGLAWLWRNKLEQKTWLLKALIYTIPLPYITIMAGWNVAEVGRQPWIVYGMMRTSDAVSPVPAAS
VATSVIAMVIIYSFLGILDIYLLKKYARKGPQPA

Specific function: Cytochrome Oxidase Subunit. [C]

COG id: COG1271

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 1

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome ubiquinol oxidase subunit 1 family [H]

Homologues:

Organism=Escherichia coli, GI1787212, Length=500, Percent_Identity=40.2, Blast_Score=350, Evalue=7e-98,
Organism=Escherichia coli, GI87081779, Length=500, Percent_Identity=39, Blast_Score=347, Evalue=7e-97,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002585 [H]

Pfam domain/function: PF01654 Bac_Ubq_Cox [H]

EC number: 1.10.3.-

Molecular weight: Translated: 48891; Mature: 48891

Theoretical pI: Translated: 9.56; Mature: 9.56

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDVVLLSRLQFAIAVFFHFIFVPLTLGLSVMLAIMETMYVRSGNEVYKRMAKFWGKLFII
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
NFALGVVTGITLEFQFGTNWSRYSEYVGDIFGSLLAIEATVAFFLESTFLAVWHFGWEKV
HHHHHHHHCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHH
SKKVHLFAIWAVAIASNISALWIILANGWMQNPVGYVLRNGRAELDSFYEVLTNVFAWGQ
CCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHH
YFHTIFASWMLAGFFVLGVSAWHIMRKNELDFFNRSFRLGAVFALLFAVLVAVQGHNHGN
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
TVARLQPAKLAAMESHWETKAGAPMYLLVLPDQENEKNAIEAFGIPNVLSLLAFNDPNAE
CEEEECHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHHHCCCHHHHHHHHCCCCCCC
VLGLKEFPKEDRPPVLLTFLSFRLMVGLGTLFPILAGLAWLWRNKLEQKTWLLKALIYTI
EEECHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
PLPYITIMAGWNVAEVGRQPWIVYGMMRTSDAVSPVPAASVATSVIAMVIIYSFLGILDI
CHHHHHHHCCCCHHHHCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
YLLKKYARKGPQPA
HHHHHHHHCCCCCC
>Mature Secondary Structure
MDVVLLSRLQFAIAVFFHFIFVPLTLGLSVMLAIMETMYVRSGNEVYKRMAKFWGKLFII
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
NFALGVVTGITLEFQFGTNWSRYSEYVGDIFGSLLAIEATVAFFLESTFLAVWHFGWEKV
HHHHHHHHCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHH
SKKVHLFAIWAVAIASNISALWIILANGWMQNPVGYVLRNGRAELDSFYEVLTNVFAWGQ
CCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHH
YFHTIFASWMLAGFFVLGVSAWHIMRKNELDFFNRSFRLGAVFALLFAVLVAVQGHNHGN
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
TVARLQPAKLAAMESHWETKAGAPMYLLVLPDQENEKNAIEAFGIPNVLSLLAFNDPNAE
CEEEECHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHHHCCCHHHHHHHHCCCCCCC
VLGLKEFPKEDRPPVLLTFLSFRLMVGLGTLFPILAGLAWLWRNKLEQKTWLLKALIYTI
EEECHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
PLPYITIMAGWNVAEVGRQPWIVYGMMRTSDAVSPVPAASVATSVIAMVIIYSFLGILDI
CHHHHHHHCCCCHHHHCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
YLLKKYARKGPQPA
HHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8969509; 9384377 [H]