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The map label for this gene is cooC [H]

Identifier: 78358069

GI number: 78358069

Start: 3016434

End: 3017240

Strand: Direct

Name: cooC [H]

Synonym: Dde_3029

Alternate gene names: 78358069

Gene position: 3016434-3017240 (Clockwise)

Preceding gene: 78358068

Following gene: 78358070

Centisome position: 80.86

GC content: 65.55

Gene sequence:

>807_bases
ATGAAACTGGCATTTGCCGGAAAAGGCGGCGTGGGCAAAACATCGGTCACCGCGTGGACAGCCGACTGGCTGGCCCGCAA
CGGCCGCGATGTCTGGATGGTTGACGCGGACACCGCGCTTTCGCTGGGACAGGCTTGCGGTGTGGCCGCAGACAGTCTGC
CCGAACCGCTGACAGCCAGAAAGGACCTGATAAACCGGCTCATCCACGCGGGGGGCTTTCTTGACCTCAACCCCGACGTA
AGCGACCTGCCGCACCAGCTGGCAGTGGACGTGCCTGTTTCCGGCGGACCGCTGTATGCACCGGCTGCCGGCAGAAAGCG
GCTGCTGGTCATGGGAGCGGTGACCAATGCGGGCGGGGGGTGTGCCTGCGACGCCAACGCTCTGCTGAAGGCCATGCTGG
CGCACCTTGTGATGAAAGAAAACACCTGTGTACTTGTGGACCTGGAAGCCGGAGTGGAACATCTGGGCAGAGGTACGGTG
GCACATGTGGACGCTCTTGTGGTGGTCAGCGAACCGAGCCTGCGCAGCCTGCACACGGCGGCGCAGGTGGGCCGCATGGC
GGACCAGCTGGGTCTGCGCAGACAGGCGCTGCTGCTTAACAGATACAGCGGGGCAGACCTGCACGACGTGTCCGGACTGC
CCGACCTGCCGGGTCTGCCCCCCCTGCGTGCCGTGCTGCCGCCGCTCGCCGGACTCATCGAGCGGCAGCTGCACACCGCA
GATGTGCTCGGCCTGCCGGAACAGCAGCTTGTGGACACCACACTGCAGCGGCTCATGGAGCATCTGGGGCTGGACGTCTG
CCCCTAG

Upstream 100 bases:

>100_bases
GCCGGACCCCGTAAAGGCTGCACTGGCATTTGACCTGCGCATACGCGCAAAACGCAAAGCGCTGGGCCTTGGCGAATAAC
CGGCACGCAGGAGACGGCAT

Downstream 100 bases:

>100_bases
GTCGGCCTCAATGGCTGCCCAATGTCTGTCCCTGACACACAAACACAGCGCCTCCGGCAACCCGCCGGAGGCGCTCTTTG
CCTGCGCCCCTGCCGCGGCG

Product: carbon monoxide dehydrogenase accessory protein CooC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 268; Mature: 268

Protein sequence:

>268_residues
MKLAFAGKGGVGKTSVTAWTADWLARNGRDVWMVDADTALSLGQACGVAADSLPEPLTARKDLINRLIHAGGFLDLNPDV
SDLPHQLAVDVPVSGGPLYAPAAGRKRLLVMGAVTNAGGGCACDANALLKAMLAHLVMKENTCVLVDLEAGVEHLGRGTV
AHVDALVVVSEPSLRSLHTAAQVGRMADQLGLRRQALLLNRYSGADLHDVSGLPDLPGLPPLRAVLPPLAGLIERQLHTA
DVLGLPEQQLVDTTLQRLMEHLGLDVCP

Sequences:

>Translated_268_residues
MKLAFAGKGGVGKTSVTAWTADWLARNGRDVWMVDADTALSLGQACGVAADSLPEPLTARKDLINRLIHAGGFLDLNPDV
SDLPHQLAVDVPVSGGPLYAPAAGRKRLLVMGAVTNAGGGCACDANALLKAMLAHLVMKENTCVLVDLEAGVEHLGRGTV
AHVDALVVVSEPSLRSLHTAAQVGRMADQLGLRRQALLLNRYSGADLHDVSGLPDLPGLPPLRAVLPPLAGLIERQLHTA
DVLGLPEQQLVDTTLQRLMEHLGLDVCP
>Mature_268_residues
MKLAFAGKGGVGKTSVTAWTADWLARNGRDVWMVDADTALSLGQACGVAADSLPEPLTARKDLINRLIHAGGFLDLNPDV
SDLPHQLAVDVPVSGGPLYAPAAGRKRLLVMGAVTNAGGGCACDANALLKAMLAHLVMKENTCVLVDLEAGVEHLGRGTV
AHVDALVVVSEPSLRSLHTAAQVGRMADQLGLRRQALLLNRYSGADLHDVSGLPDLPGLPPLRAVLPPLAGLIERQLHTA
DVLGLPEQQLVDTTLQRLMEHLGLDVCP

Specific function: Involved in the insertion of nickel into the carbon monoxide dehydrogenase (CODH) [H]

COG id: COG3640

COG function: function code D; CO dehydrogenase maturation factor

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002586
- InterPro:   IPR014433 [H]

Pfam domain/function: PF01656 CbiA [H]

EC number: NA

Molecular weight: Translated: 28110; Mature: 28110

Theoretical pI: Translated: 6.22; Mature: 6.22

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLAFAGKGGVGKTSVTAWTADWLARNGRDVWMVDADTALSLGQACGVAADSLPEPLTAR
CEEEECCCCCCCCCEEHHEEHHHHHCCCCEEEEEECHHHHHHHHHHCCCHHCCCCCHHHH
KDLINRLIHAGGFLDLNPDVSDLPHQLAVDVPVSGGPLYAPAAGRKRLLVMGAVTNAGGG
HHHHHHHHHHCCCEECCCCHHHCCCCEEEECCCCCCCEECCCCCCCEEEEEEEECCCCCC
CACDANALLKAMLAHLVMKENTCVLVDLEAGVEHLGRGTVAHVDALVVVSEPSLRSLHTA
CEECHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHCCCCEEEEEEEEEECCCCHHHHHHH
AQVGRMADQLGLRRQALLLNRYSGADLHDVSGLPDLPGLPPLRAVLPPLAGLIERQLHTA
HHHHHHHHHHHHHHHHHHHHCCCCCCCHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
DVLGLPEQQLVDTTLQRLMEHLGLDVCP
HHCCCCHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MKLAFAGKGGVGKTSVTAWTADWLARNGRDVWMVDADTALSLGQACGVAADSLPEPLTAR
CEEEECCCCCCCCCEEHHEEHHHHHCCCCEEEEEECHHHHHHHHHHCCCHHCCCCCHHHH
KDLINRLIHAGGFLDLNPDVSDLPHQLAVDVPVSGGPLYAPAAGRKRLLVMGAVTNAGGG
HHHHHHHHHHCCCEECCCCHHHCCCCEEEECCCCCCCEECCCCCCCEEEEEEEECCCCCC
CACDANALLKAMLAHLVMKENTCVLVDLEAGVEHLGRGTVAHVDALVVVSEPSLRSLHTA
CEECHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHCCCCEEEEEEEEEECCCCHHHHHHH
AQVGRMADQLGLRRQALLLNRYSGADLHDVSGLPDLPGLPPLRAVLPPLAGLIERQLHTA
HHHHHHHHHHHHHHHHHHHHCCCCCCCHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
DVLGLPEQQLVDTTLQRLMEHLGLDVCP
HHCCCCHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9079911; 1644755 [H]