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The map label for this gene is 78358006

Identifier: 78358006

GI number: 78358006

Start: 2949505

End: 2950827

Strand: Direct

Name: 78358006

Synonym: Dde_2966

Alternate gene names: NA

Gene position: 2949505-2950827 (Clockwise)

Preceding gene: 78358005

Following gene: 78358007

Centisome position: 79.07

GC content: 57.29

Gene sequence:

>1323_bases
ATGACCCAGCCCTTCAAGGATGCCATAGGCATCTGCAAGGCCATAATGCGCAACGGGTACGACGCCTACGTGGTCAACAC
CCAGCTGCAGTCCGAAATTCTCGATCAGGACTGCCTTGAAATAGACATCGCGTGCGAGCCCGGTTATGTGGAGCTCGGCA
AGATTTTTCCCGGTCTTGAAATGTCCGGCGAAGACGGCGTGGTGGGCACCCTGCGCGAAGGGGGAACCCTTTTCCGCTTC
TACCACACCGACACTGATGATTCTTCGCATCCGGAAGCCACACTTGCCCGTGTGACCCCCACCATGCTGCGCCGCCTTGA
GGCAAAAGGTACGCTGCCCGCCTCGCTGGCCTGTCCGTTCATTCCCAGCTCGGCGGAAACATATCAGGGCTTTGACGATT
TTTCCAAGGGCGACATACGCTTCGAGGGCGTGCCCGACGAAACCCTGCGCCGTTCTTACGTACTGGGTGTGCGCGCCATG
CGCATAGCCGCCAACTTCGACCTGCCCATCGAACCCAACTCGTGGATGGCCATAGTACGCAGTGCAAGCCGCATTCTAGA
CTATGTGCCGGTAACGGAAATCATGGACGAATGGCGCAAGGTGGAAGCCGAAAACATGTACAAGTTCGTCCAGCTGATGT
TTGACTCCATGCTGCTGCACGGACTCATTCCCGAACTGGCCGCACTGTCGCGCATCCGCCACCTGCGCACGCCCGAGGCA
GGCGAAGAGACCGTGCTCGACCACACCATAGAATGCATGCGCCGCTACCCCGAAGAACTGCCCTTTGACTGGCTGGGCAC
CGTGGCCACCATGTTCCACGATGTGGGCAAACTGTATGCCGCCGAATACTACAACGGCAAATGGACATTCTATCAGCACC
ACCGCATCGGTGCCAAAGTCACACGCAAAATTCTGCGCAGGCTGCACTTTCTGCCGGAAGATGTCGACCTTATCTGCCAT
CTGGTGCGCAACCACATGCGTTTCCATTTCATGCTCACCGACAAGGGCATACGCCGGTTCAAGGCGCTGGATGAATACCC
GCGCCTGATTGAAATGGCCAGAGCCGACATTAAAGCCCGCGACGGCAACTACACGCACTTCAACCACAATATGAAGTACC
TTGAACGTGCCGAAACCCCCGAGCAGATGCTGGAACCGCTGCTGAACGGCAACGAAATCATGGAATTCACCGGTCTGAAG
CCCGGCCCCTATGTGGGGGTTATCCGCGATGCGCTGCTTAAAGCGCAGGTTACGGGTGAGGTGACCAGCATGGAAGAAGC
CATCGAGTACGTCAAAACGTACAGTGAACGCGCTCCCCGATAA

Upstream 100 bases:

>100_bases
TTCGGGCGGTTCCGGCTTGACAACGCACGGTTAGCTTGAAATGCATTGGCTGAACGAACAGCTTTTCCGCCGAAAGCCGG
CGTATGCATAAGGAGGAAGA

Downstream 100 bases:

>100_bases
AAAAATCAGGGCCGGAGGGGTTCCCCTTCCGGCCCTTCTTCCTATATTCCCCCTGTCGACGCCGCCCGTTTTTACCGCGG
GCTGCTGCCTTTCCCGTCGT

Product: HD domain-containing protein

Products: NA

Alternate protein names: tRNA Nucleotidyltransferase; Metal Dependent Phosphohydrolase; RNA Nucleotidyltransferase; PolyA Polymerase Family Protein; Poly(A) Polymerase; Poly A Polymerase; Polynucleotide Adenylyltransferase Region; PolyA Polymerase; HD Domain-Containing Protein; tRNA Nucleotidyltransferase/Poly(A) Polymerase; tRNA Nucleotidyltransferase PcnB; Metal-Dependent Phosphohydrolase; HDIG Domain-Containing Protein; CCA-Adding TRNA Nucleotidyltransferase; Nucleotidyltransferase; Poly(A) Polymerase/TRNA Nucleotidyl Transferase; Domain HDIG Containing Protein; HD Domain Protein; Polynucleotide Adenylyltransferase; Multifunctional CCA Protein; Polynucleotide Polymerase; Poly(A) Polymerase PcnA; Poly A Polymerase Family Protein

Number of amino acids: Translated: 440; Mature: 439

Protein sequence:

>440_residues
MTQPFKDAIGICKAIMRNGYDAYVVNTQLQSEILDQDCLEIDIACEPGYVELGKIFPGLEMSGEDGVVGTLREGGTLFRF
YHTDTDDSSHPEATLARVTPTMLRRLEAKGTLPASLACPFIPSSAETYQGFDDFSKGDIRFEGVPDETLRRSYVLGVRAM
RIAANFDLPIEPNSWMAIVRSASRILDYVPVTEIMDEWRKVEAENMYKFVQLMFDSMLLHGLIPELAALSRIRHLRTPEA
GEETVLDHTIECMRRYPEELPFDWLGTVATMFHDVGKLYAAEYYNGKWTFYQHHRIGAKVTRKILRRLHFLPEDVDLICH
LVRNHMRFHFMLTDKGIRRFKALDEYPRLIEMARADIKARDGNYTHFNHNMKYLERAETPEQMLEPLLNGNEIMEFTGLK
PGPYVGVIRDALLKAQVTGEVTSMEEAIEYVKTYSERAPR

Sequences:

>Translated_440_residues
MTQPFKDAIGICKAIMRNGYDAYVVNTQLQSEILDQDCLEIDIACEPGYVELGKIFPGLEMSGEDGVVGTLREGGTLFRF
YHTDTDDSSHPEATLARVTPTMLRRLEAKGTLPASLACPFIPSSAETYQGFDDFSKGDIRFEGVPDETLRRSYVLGVRAM
RIAANFDLPIEPNSWMAIVRSASRILDYVPVTEIMDEWRKVEAENMYKFVQLMFDSMLLHGLIPELAALSRIRHLRTPEA
GEETVLDHTIECMRRYPEELPFDWLGTVATMFHDVGKLYAAEYYNGKWTFYQHHRIGAKVTRKILRRLHFLPEDVDLICH
LVRNHMRFHFMLTDKGIRRFKALDEYPRLIEMARADIKARDGNYTHFNHNMKYLERAETPEQMLEPLLNGNEIMEFTGLK
PGPYVGVIRDALLKAQVTGEVTSMEEAIEYVKTYSERAPR
>Mature_439_residues
TQPFKDAIGICKAIMRNGYDAYVVNTQLQSEILDQDCLEIDIACEPGYVELGKIFPGLEMSGEDGVVGTLREGGTLFRFY
HTDTDDSSHPEATLARVTPTMLRRLEAKGTLPASLACPFIPSSAETYQGFDDFSKGDIRFEGVPDETLRRSYVLGVRAMR
IAANFDLPIEPNSWMAIVRSASRILDYVPVTEIMDEWRKVEAENMYKFVQLMFDSMLLHGLIPELAALSRIRHLRTPEAG
EETVLDHTIECMRRYPEELPFDWLGTVATMFHDVGKLYAAEYYNGKWTFYQHHRIGAKVTRKILRRLHFLPEDVDLICHL
VRNHMRFHFMLTDKGIRRFKALDEYPRLIEMARADIKARDGNYTHFNHNMKYLERAETPEQMLEPLLNGNEIMEFTGLKP
GPYVGVIRDALLKAQVTGEVTSMEEAIEYVKTYSERAPR

Specific function: Unknown

COG id: COG0617

COG function: function code J; tRNA nucleotidyltransferase/poly(A) polymerase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 50524; Mature: 50392

Theoretical pI: Translated: 5.62; Mature: 5.62

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTQPFKDAIGICKAIMRNGYDAYVVNTQLQSEILDQDCLEIDIACEPGYVELGKIFPGLE
CCCCHHHHHHHHHHHHHCCCCEEEECHHHHHHHHCCHHHEEEEECCCCCEEHHHHCCCCC
MSGEDGVVGTLREGGTLFRFYHTDTDDSSHPEATLARVTPTMLRRLEAKGTLPASLACPF
CCCCCCCEEEECCCCEEEEEEECCCCCCCCCCHHHHHHCHHHHHHHHHCCCCCHHHCCCC
IPSSAETYQGFDDFSKGDIRFEGVPDETLRRSYVLGVRAMRIAANFDLPIEPNSWMAIVR
CCCCCHHHCCCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHEEECCCCCCCCCHHHHHHH
SASRILDYVPVTEIMDEWRKVEAENMYKFVQLMFDSMLLHGLIPELAALSRIRHLRTPEA
HHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
GEETVLDHTIECMRRYPEELPFDWLGTVATMFHDVGKLYAAEYYNGKWTFYQHHRIGAKV
CCHHHHHHHHHHHHHCHHHCCHHHHHHHHHHHHHHHHHHHHHEECCEEEEEECHHHHHHH
TRKILRRLHFLPEDVDLICHLVRNHMRFHFMLTDKGIRRFKALDEYPRLIEMARADIKAR
HHHHHHHHHCCCCHHHHHHHHHHHCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHCCC
DGNYTHFNHNMKYLERAETPEQMLEPLLNGNEIMEFTGLKPGPYVGVIRDALLKAQVTGE
CCCEEEECCCHHHHHHCCCHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHH
VTSMEEAIEYVKTYSERAPR
HHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
TQPFKDAIGICKAIMRNGYDAYVVNTQLQSEILDQDCLEIDIACEPGYVELGKIFPGLE
CCCHHHHHHHHHHHHHCCCCEEEECHHHHHHHHCCHHHEEEEECCCCCEEHHHHCCCCC
MSGEDGVVGTLREGGTLFRFYHTDTDDSSHPEATLARVTPTMLRRLEAKGTLPASLACPF
CCCCCCCEEEECCCCEEEEEEECCCCCCCCCCHHHHHHCHHHHHHHHHCCCCCHHHCCCC
IPSSAETYQGFDDFSKGDIRFEGVPDETLRRSYVLGVRAMRIAANFDLPIEPNSWMAIVR
CCCCCHHHCCCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHEEECCCCCCCCCHHHHHHH
SASRILDYVPVTEIMDEWRKVEAENMYKFVQLMFDSMLLHGLIPELAALSRIRHLRTPEA
HHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
GEETVLDHTIECMRRYPEELPFDWLGTVATMFHDVGKLYAAEYYNGKWTFYQHHRIGAKV
CCHHHHHHHHHHHHHCHHHCCHHHHHHHHHHHHHHHHHHHHHEECCEEEEEECHHHHHHH
TRKILRRLHFLPEDVDLICHLVRNHMRFHFMLTDKGIRRFKALDEYPRLIEMARADIKAR
HHHHHHHHHCCCCHHHHHHHHHHHCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHCCC
DGNYTHFNHNMKYLERAETPEQMLEPLLNGNEIMEFTGLKPGPYVGVIRDALLKAQVTGE
CCCEEEECCCHHHHHHCCCHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHH
VTSMEEAIEYVKTYSERAPR
HHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA