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The map label for this gene is yagA [C]

Identifier: 78357938

GI number: 78357938

Start: 2886839

End: 2887468

Strand: Reverse

Name: yagA [C]

Synonym: Dde_2897

Alternate gene names: 78357938

Gene position: 2887468-2886839 (Counterclockwise)

Preceding gene: 78357939

Following gene: 78357937

Centisome position: 77.41

GC content: 50.16

Gene sequence:

>630_bases
TTGTGTTTTCTGCACTTACGTAATGTCCGGGGCTACCGATGGAACCACAAGCGCGTGTATCGAATATACTGCGAGTTGGA
ACTCAACATGCGTATCAAACCTAAGAAACGCATTATCCGAGAAAAGCCGGAGCCGCTTACGCAACCCCAGCGGGTCAATC
AGTCATGGTCGATGGACTTTATGCACGACCAGTTGCAAAACGGACGTAGCTTCAGGTTGTTCAATGTGATCGACGATTTT
AACCGCGAGGGATTGACCATAGAAGCAGATTTCTCCCTGCCCGCCGAGCGTGTTATCCGAAGTCTTGAACAAGTTATAGA
GTGGCGGGGAAAGCCTGAATCGATTCGCTGTGATAACGGGCCGGAGTACATCAGCAATAAGCTGCTGACGTGGGCTGCCA
GTCAGGGAATACGCATAGAGCATATTCAACCAGGGCAACCTCAGCAGAACGCTTATGTGGAGCGGTATAACCGAACAGTA
CGGTACGACTGGCTTGGGCAGTTTCTGTTTTCAAGCATTGAAGAGGTGCAGGACCATGCCACCAACTGGTTATGGACCTA
CAACAATGAACGGCCTAACATGGGAATTGGGGGAATCTCCCCTGCTCAAAAACTGAGAATGGCTGCATAG

Upstream 100 bases:

>100_bases
GACATGCTATCGGTACGAACCGAAGCTTTCAGCCGAGAACGAGTTGATCGCAGATTGCCTCATTCGCTTGACACACAGCC
AGCGGAACTAGGGTTTCGGT

Downstream 100 bases:

>100_bases
CCTCTACTTTTCAGGCCTCCTAAAAATGGGAGGATTACCAAGTCCCTTACATAGAGATAGAGTGCCGCTTTTCATGCCTA
TCAGCTCTTGTGTGCCACCC

Product: ISxcd1 transposase

Products: NA

Alternate protein names: ORF1 [H]

Number of amino acids: Translated: 209; Mature: 209

Protein sequence:

>209_residues
MCFLHLRNVRGYRWNHKRVYRIYCELELNMRIKPKKRIIREKPEPLTQPQRVNQSWSMDFMHDQLQNGRSFRLFNVIDDF
NREGLTIEADFSLPAERVIRSLEQVIEWRGKPESIRCDNGPEYISNKLLTWAASQGIRIEHIQPGQPQQNAYVERYNRTV
RYDWLGQFLFSSIEEVQDHATNWLWTYNNERPNMGIGGISPAQKLRMAA

Sequences:

>Translated_209_residues
MCFLHLRNVRGYRWNHKRVYRIYCELELNMRIKPKKRIIREKPEPLTQPQRVNQSWSMDFMHDQLQNGRSFRLFNVIDDF
NREGLTIEADFSLPAERVIRSLEQVIEWRGKPESIRCDNGPEYISNKLLTWAASQGIRIEHIQPGQPQQNAYVERYNRTV
RYDWLGQFLFSSIEEVQDHATNWLWTYNNERPNMGIGGISPAQKLRMAA
>Mature_209_residues
MCFLHLRNVRGYRWNHKRVYRIYCELELNMRIKPKKRIIREKPEPLTQPQRVNQSWSMDFMHDQLQNGRSFRLFNVIDDF
NREGLTIEADFSLPAERVIRSLEQVIEWRGKPESIRCDNGPEYISNKLLTWAASQGIRIEHIQPGQPQQNAYVERYNRTV
RYDWLGQFLFSSIEEVQDHATNWLWTYNNERPNMGIGGISPAQKLRMAA

Specific function: Unknown

COG id: COG2801

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 integrase catalytic domain [H]

Homologues:

Organism=Escherichia coli, GI1786462, Length=164, Percent_Identity=29.2682926829268, Blast_Score=64, Evalue=9e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001584
- InterPro:   IPR012337 [H]

Pfam domain/function: PF00665 rve [H]

EC number: NA

Molecular weight: Translated: 24954; Mature: 24954

Theoretical pI: Translated: 9.58; Mature: 9.58

Prosite motif: PS50994 INTEGRASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MCFLHLRNVRGYRWNHKRVYRIYCELELNMRIKPKKRIIREKPEPLTQPQRVNQSWSMDF
CEEEEEECCCCCEECCCEEEEEEEEEEECEEECHHHHHHHCCCCCCCCHHHCCCCCCHHH
MHDQLQNGRSFRLFNVIDDFNREGLTIEADFSLPAERVIRSLEQVIEWRGKPESIRCDNG
HHHHHHCCCCEEEEEHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCEECCCC
PEYISNKLLTWAASQGIRIEHIQPGQPQQNAYVERYNRTVRYDWLGQFLFSSIEEVQDHA
HHHHHHHHHEEECCCCEEEEECCCCCCCHHHHHHHHCCEEEHHHHHHHHHHHHHHHHHHH
TNWLWTYNNERPNMGIGGISPAQKLRMAA
CCEEEEECCCCCCCCCCCCCHHHHHHCCC
>Mature Secondary Structure
MCFLHLRNVRGYRWNHKRVYRIYCELELNMRIKPKKRIIREKPEPLTQPQRVNQSWSMDF
CEEEEEECCCCCEECCCEEEEEEEEEEECEEECHHHHHHHCCCCCCCCHHHCCCCCCHHH
MHDQLQNGRSFRLFNVIDDFNREGLTIEADFSLPAERVIRSLEQVIEWRGKPESIRCDNG
HHHHHHCCCCEEEEEHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCCCEECCCC
PEYISNKLLTWAASQGIRIEHIQPGQPQQNAYVERYNRTVRYDWLGQFLFSSIEEVQDHA
HHHHHHHHHEEECCCCEEEEECCCCCCCHHHHHHHHCCEEEHHHHHHHHHHHHHHHHHHH
TNWLWTYNNERPNMGIGGISPAQKLRMAA
CCEEEEECCCCCCCCCCCCCHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1718819 [H]