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The map label for this gene is rfbA [H]

Identifier: 78357937

GI number: 78357937

Start: 2885551

End: 2886558

Strand: Reverse

Name: rfbA [H]

Synonym: Dde_2896

Alternate gene names: 78357937

Gene position: 2886558-2885551 (Counterclockwise)

Preceding gene: 78357938

Following gene: 304570591

Centisome position: 77.38

GC content: 44.54

Gene sequence:

>1008_bases
TTGCTGAATATTTTTACTCGGAGTCGCCGTAGCAAAGCAACTGCGTCGGGCAGAGAAGCTGGAAAGGCAGCAACGAACTG
GGCAGCTCTGGCACTCAAGCACCGAGAAGATGCAAAACCTGATAACCACCCTATGACGAAGAGTTCTCTATTTGTACTCT
ATAAACGCTCTTCAAGTAAAATATCTATGCAAAACGAAGTAAGAATTGTAGCAGGACGCACTGAGCAGGCATACTGGAAA
GATATCTGGAACTACCGAAATCTTCTCTTTTTTCTCTCTTGGCGCGACATTCTTGTAAGATACAAGCAAACCACAATAGG
CATCCTTTGGGCTATACTGCGTCCTTTTTTTACGATGCTAGCTTTCACAATAGTTTTTGGGGCACTAGCCAAATTGCCAA
GCCAGGGAGACGCTCCTTATGCCCTGATGGTGTTTGCTGCAACACTTCCTTGGCAGCTATTTTCAACGGCTCTAGCCGAT
TCATCAAACAGTTTGATTAATAACTCAAACCTAGTCTCAAAAGTCTATTTCCCTCGCATCCTTGTCCCCATATCGTGTGT
TACAGTCAATATAGCTGATTTTGTTATTTCGTTCGCTATATTAGGGGGGCTGATACTGTGGTACGATTATGCGGTTTCAA
TACAGATGCTCGCAACAATACCTCTTGTGTTGTTAACAGCAGTTTTGGCGCTTGGTCCTGGCTTATTGTTTTGTGCTCTT
AACGTATCCTATCGTGACTTTCGCTACCTTATTCCATTTGTTACTCAGTTTGGCCTGTATGTCTCTCCTGTGGGGTTTTC
CAGCAGTATTGTTCCAGAGAAATGGCTCTGGCTATATGAGTTGAACCCAATGGTGGGAGTAATTGAAGGATTTCGCTGGG
CTATTCTAGGCACCTCTACTTTTCCTCTCCGCCCGTTAATATTCTCATGTCTTTTGGCCGCTGGCCTCTTGCTTATAGGC
ATAGTTTACTTTCGCAAGACGGAGCGACGCTTCGCGGATATCATATGA

Upstream 100 bases:

>100_bases
TTTGTAGGCTTGAATAGGTTCTGGTGTAGTGATAAACCGAAGTCCATTGCTATGCTGAGAGCCTAGGCTCTTTAGCAATA
CGTTGCTGCTATGCTTATAA

Downstream 100 bases:

>100_bases
CCAGACCCGTAATTTCAATCGACTCTCTCAGTAAGAAATACCGGCTACGTTGTTCCCAAGACACAACTTATCAAACTCTG
CGTGAGGCTTTAACTTCAAT

Product: ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 335; Mature: 335

Protein sequence:

>335_residues
MLNIFTRSRRSKATASGREAGKAATNWAALALKHREDAKPDNHPMTKSSLFVLYKRSSSKISMQNEVRIVAGRTEQAYWK
DIWNYRNLLFFLSWRDILVRYKQTTIGILWAILRPFFTMLAFTIVFGALAKLPSQGDAPYALMVFAATLPWQLFSTALAD
SSNSLINNSNLVSKVYFPRILVPISCVTVNIADFVISFAILGGLILWYDYAVSIQMLATIPLVLLTAVLALGPGLLFCAL
NVSYRDFRYLIPFVTQFGLYVSPVGFSSSIVPEKWLWLYELNPMVGVIEGFRWAILGTSTFPLRPLIFSCLLAAGLLLIG
IVYFRKTERRFADII

Sequences:

>Translated_335_residues
MLNIFTRSRRSKATASGREAGKAATNWAALALKHREDAKPDNHPMTKSSLFVLYKRSSSKISMQNEVRIVAGRTEQAYWK
DIWNYRNLLFFLSWRDILVRYKQTTIGILWAILRPFFTMLAFTIVFGALAKLPSQGDAPYALMVFAATLPWQLFSTALAD
SSNSLINNSNLVSKVYFPRILVPISCVTVNIADFVISFAILGGLILWYDYAVSIQMLATIPLVLLTAVLALGPGLLFCAL
NVSYRDFRYLIPFVTQFGLYVSPVGFSSSIVPEKWLWLYELNPMVGVIEGFRWAILGTSTFPLRPLIFSCLLAAGLLLIG
IVYFRKTERRFADII
>Mature_335_residues
MLNIFTRSRRSKATASGREAGKAATNWAALALKHREDAKPDNHPMTKSSLFVLYKRSSSKISMQNEVRIVAGRTEQAYWK
DIWNYRNLLFFLSWRDILVRYKQTTIGILWAILRPFFTMLAFTIVFGALAKLPSQGDAPYALMVFAATLPWQLFSTALAD
SSNSLINNSNLVSKVYFPRILVPISCVTVNIADFVISFAILGGLILWYDYAVSIQMLATIPLVLLTAVLALGPGLLFCAL
NVSYRDFRYLIPFVTQFGLYVSPVGFSSSIVPEKWLWLYELNPMVGVIEGFRWAILGTSTFPLRPLIFSCLLAAGLLLIG
IVYFRKTERRFADII

Specific function: May form an ATP-driven O-antigen export apparatus, in association with rfbB [H]

COG id: COG1682

COG function: function code GM; ABC-type polysaccharide/polyol phosphate export systems, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-2 domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000412
- InterPro:   IPR013525 [H]

Pfam domain/function: PF01061 ABC2_membrane [H]

EC number: NA

Molecular weight: Translated: 37753; Mature: 37753

Theoretical pI: Translated: 10.29; Mature: 10.29

Prosite motif: PS51012 ABC_TM2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLNIFTRSRRSKATASGREAGKAATNWAALALKHREDAKPDNHPMTKSSLFVLYKRSSSK
CCCCCCCCCHHHCCCCCHHCCCHHHHHHHHEEECCCCCCCCCCCCCCCCEEEEEECCCCC
ISMQNEVRIVAGRTEQAYWKDIWNYRNLLFFLSWRDILVRYKQTTIGILWAILRPFFTML
EEECCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AFTIVFGALAKLPSQGDAPYALMVFAATLPWQLFSTALADSSNSLINNSNLVSKVYFPRI
HHHHHHHHHHHCCCCCCCCHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH
LVPISCVTVNIADFVISFAILGGLILWYDYAVSIQMLATIPLVLLTAVLALGPGLLFCAL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEE
NVSYRDFRYLIPFVTQFGLYVSPVGFSSSIVPEKWLWLYELNPMVGVIEGFRWAILGTST
CCCHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCEEEEEECCHHHHHHCCCEEEEECCCC
FPLRPLIFSCLLAAGLLLIGIVYFRKTERRFADII
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MLNIFTRSRRSKATASGREAGKAATNWAALALKHREDAKPDNHPMTKSSLFVLYKRSSSK
CCCCCCCCCHHHCCCCCHHCCCHHHHHHHHEEECCCCCCCCCCCCCCCCEEEEEECCCCC
ISMQNEVRIVAGRTEQAYWKDIWNYRNLLFFLSWRDILVRYKQTTIGILWAILRPFFTML
EEECCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AFTIVFGALAKLPSQGDAPYALMVFAATLPWQLFSTALADSSNSLINNSNLVSKVYFPRI
HHHHHHHHHHHCCCCCCCCHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH
LVPISCVTVNIADFVISFAILGGLILWYDYAVSIQMLATIPLVLLTAVLALGPGLLFCAL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEE
NVSYRDFRYLIPFVTQFGLYVSPVGFSSSIVPEKWLWLYELNPMVGVIEGFRWAILGTST
CCCHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCEEEEEECCHHHHHHCCCEEEEECCCC
FPLRPLIFSCLLAAGLLLIGIVYFRKTERRFADII
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7533882 [H]