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The map label for this gene is yrkF [H]

Identifier: 78357603

GI number: 78357603

Start: 2579350

End: 2580216

Strand: Direct

Name: yrkF [H]

Synonym: Dde_2561

Alternate gene names: 78357603

Gene position: 2579350-2580216 (Clockwise)

Preceding gene: 78357602

Following gene: 78357604

Centisome position: 69.15

GC content: 59.75

Gene sequence:

>867_bases
ATGTTGTGGAAGCAGTTCTTCACGCCCGTAAAATCATACTCCGTAAAAGAAGCCGCGGAATTTCTGACCGGAAAAAACCC
TTCCGATGTCACGGTGCTTGATGTGCGGCAGCCGGGTGAATACCGGCAGGGACATCTGCCCGGAGCGCGGCTTGTTCCCA
TGGGTGAGCTTTCCGACAGGCTGGACGAACTGGAAAGAGACGGCCCGACGCTGGTATACTGCGCCATCGGCGGACGCAGC
CGTGTGGCCGCACAGATGCTGGCCGGCAAGGGATTTAAACATGTCATCAACATGGCCGGAGGCTTCAAGGACTGGGAATC
AATGCAGCAGGGCTCCGGCTGGACCAGCACCGGCGACTACACGCAGGGACTTGAACTGTTTCCCGACGACATAGACGTGC
GCAGGGCTCTGGAAGTCGCATGGGGCATGGAAGCCGCGCTGGAAGAATTTTACCGTGACATGGCGGCGCGGGCCCGCGAA
GCAGGCAAGGAAACCACCGCGGCCATGTATGACAGGCTGGCCAGATTTGAGGTGGGGCACAAGGCAAAAATAGAAAACCG
CTACGCCGCACTGGCCGGAAGCGACGCGGAACTGGAAAAAAAAGCGGCGCAGGTGGTCGAAGGCGGCATGACCACGGAAG
AGTATATGCAGCGCAGCGGCATAGACCCTGCAGACCCGGCCCACATAGCCGGTTTTGCCATGATGATGGAAGCGCAGGCC
ATGGACCTGTACGCGCGTGCCGCGCGCAGCGCGGCAGATGCCGGAACGGCCGCTTTTCTGGAAGACATGGTGCAGGAAGA
AAAAAGCCACATGCAGCAGGTGGGCAGGCTGCTCGATTCGCTGCTGGAGGATCAGAACCATGGCTAG

Upstream 100 bases:

>100_bases
GCACCGCGACGGCATCCGCTTTTCCGGCGCCGTCCGGTATCGGGCGCGCATCAATGCCCAGCCAGATACTCCTATCTGTC
TCATACCGGAGGTTTCTCTC

Downstream 100 bases:

>100_bases
ACTGCTGCTGCTGGGAGCAGGTCATGCGCACATGACCGTCATGGCGCACCTGCCCGAAATAATTGCCAGAGGACACACAG
TGACGGCGGTCGGCCCGCTG

Product: rhodanese-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 288; Mature: 288

Protein sequence:

>288_residues
MLWKQFFTPVKSYSVKEAAEFLTGKNPSDVTVLDVRQPGEYRQGHLPGARLVPMGELSDRLDELERDGPTLVYCAIGGRS
RVAAQMLAGKGFKHVINMAGGFKDWESMQQGSGWTSTGDYTQGLELFPDDIDVRRALEVAWGMEAALEEFYRDMAARARE
AGKETTAAMYDRLARFEVGHKAKIENRYAALAGSDAELEKKAAQVVEGGMTTEEYMQRSGIDPADPAHIAGFAMMMEAQA
MDLYARAARSAADAGTAAFLEDMVQEEKSHMQQVGRLLDSLLEDQNHG

Sequences:

>Translated_288_residues
MLWKQFFTPVKSYSVKEAAEFLTGKNPSDVTVLDVRQPGEYRQGHLPGARLVPMGELSDRLDELERDGPTLVYCAIGGRS
RVAAQMLAGKGFKHVINMAGGFKDWESMQQGSGWTSTGDYTQGLELFPDDIDVRRALEVAWGMEAALEEFYRDMAARARE
AGKETTAAMYDRLARFEVGHKAKIENRYAALAGSDAELEKKAAQVVEGGMTTEEYMQRSGIDPADPAHIAGFAMMMEAQA
MDLYARAARSAADAGTAAFLEDMVQEEKSHMQQVGRLLDSLLEDQNHG
>Mature_288_residues
MLWKQFFTPVKSYSVKEAAEFLTGKNPSDVTVLDVRQPGEYRQGHLPGARLVPMGELSDRLDELERDGPTLVYCAIGGRS
RVAAQMLAGKGFKHVINMAGGFKDWESMQQGSGWTSTGDYTQGLELFPDDIDVRRALEVAWGMEAALEEFYRDMAARARE
AGKETTAAMYDRLARFEVGHKAKIENRYAALAGSDAELEKKAAQVVEGGMTTEEYMQRSGIDPADPAHIAGFAMMMEAQA
MDLYARAARSAADAGTAAFLEDMVQEEKSHMQQVGRLLDSLLEDQNHG

Specific function: Unknown

COG id: COG0607

COG function: function code P; Rhodanese-related sulfurtransferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 rhodanese domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001763
- InterPro:   IPR001455 [H]

Pfam domain/function: PF00581 Rhodanese; PF01206 SirA [H]

EC number: NA

Molecular weight: Translated: 31742; Mature: 31742

Theoretical pI: Translated: 4.70; Mature: 4.70

Prosite motif: PS00380 RHODANESE_1 ; PS50206 RHODANESE_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
5.6 %Met     (Translated Protein)
5.9 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
5.6 %Met     (Mature Protein)
5.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLWKQFFTPVKSYSVKEAAEFLTGKNPSDVTVLDVRQPGEYRQGHLPGARLVPMGELSDR
CCHHHHHHHHHHCCHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHH
LDELERDGPTLVYCAIGGRSRVAAQMLAGKGFKHVINMAGGFKDWESMQQGSGWTSTGDY
HHHHHCCCCEEEEEECCCHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHCCCCCCCCCCC
TQGLELFPDDIDVRRALEVAWGMEAALEEFYRDMAARAREAGKETTAAMYDRLARFEVGH
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCC
KAKIENRYAALAGSDAELEKKAAQVVEGGMTTEEYMQRSGIDPADPAHIAGFAMMMEAQA
HHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
MDLYARAARSAADAGTAAFLEDMVQEEKSHMQQVGRLLDSLLEDQNHG
HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MLWKQFFTPVKSYSVKEAAEFLTGKNPSDVTVLDVRQPGEYRQGHLPGARLVPMGELSDR
CCHHHHHHHHHHCCHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCHHHHHH
LDELERDGPTLVYCAIGGRSRVAAQMLAGKGFKHVINMAGGFKDWESMQQGSGWTSTGDY
HHHHHCCCCEEEEEECCCHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHCCCCCCCCCCC
TQGLELFPDDIDVRRALEVAWGMEAALEEFYRDMAARAREAGKETTAAMYDRLARFEVGH
CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCC
KAKIENRYAALAGSDAELEKKAAQVVEGGMTTEEYMQRSGIDPADPAHIAGFAMMMEAQA
HHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
MDLYARAARSAADAGTAAFLEDMVQEEKSHMQQVGRLLDSLLEDQNHG
HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969508; 9384377 [H]