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The map label for this gene is hofB [C]

Identifier: 78357406

GI number: 78357406

Start: 2384323

End: 2386005

Strand: Direct

Name: hofB [C]

Synonym: Dde_2363

Alternate gene names: 78357406

Gene position: 2384323-2386005 (Clockwise)

Preceding gene: 78357405

Following gene: 78357407

Centisome position: 63.92

GC content: 60.96

Gene sequence:

>1683_bases
ATGAAACTGGCAGAACGACTCATGCGCTCCACCCGGCGCACGCCGGCGCCTTTGTCCGGAGTCCCCGTCCGCAGCGAAGA
CGACGCGCTGGAACAGGCTTTCCGCCGCAGTCCGCAACCTGCCACGCCCCGGACACCGCATACGGATTCCGCTCACGCTG
AAACAACCGGAACGGTCTCTGCGCCCGCCGGAACGCATCCGCCGGACATGCGGCACGCATCCGCACCGGCACATGCACGG
CAGCCGGCGGCACCGGCAGAGCACACCGGAGCTTTGCAGTCTCCGCCGGACGCAGACGTACCGGCTCCCGCCTCTTCCGG
CGCTGCACGTACTGCCATGCGCCAGCAGGCCTTCCGGCCTGCGCGGTCCGGCAACAGCACTGTGTCCTGCGCCGCCCCGC
AGGAAGAAGGCTATTACGAAGCCAAAGCCCGTGTGCATGCCCGCGTGCTGGAGCTTATGGACATCAGTGCGGCCGAACAC
CTCAATCCGGAGGTACTGGGTACTGAAATCCGCCGGCTGGTGGAAAAGGTACTGCATGAAGAATACCGGCAAATTCCGCT
CAACAGTCAGGAGCGCCGACGCGTAGCCGAGGAAATACAGCATGAAATACTGGGCCTCGGCCCGCTGGAGCCTCTGCTGG
CCGACCCTTCTGTTTCGGATATTCTGGTGAACAATTACCGGCAGGTATATGTGGAGCGCGGGGGCAAGCTGCACAAGGCG
GGTGTACGTTTTCACGATGACGAACATCTGCGGCAGATCATCGACCGCATTGTTTCACGCATCGGGCGGCGCGTGGACGA
ATCATCGCCCATGGTGGACGCCCGTCTTGCTGACGGCTCACGAGTCAACGCCATAATCCCCCCGCTGGCGCTGGACGGCC
CCAGCCTCTCCATACGCCGTTTTTCCAAGGACCCGCTGGAACTGGAAGACCTGATACGCTTCAAGGCACTGACCCCGGAA
ATGGGCGAAGTGCTACGCGGTATAGTTAAAGCCCGGCTGAACATCATTGTCTCCGGCGGCACCGGATCGGGCAAAACAAC
CATGCTCAACTGCCTGTCGCGCTTTGTGCCCCACGACGAACGCATTGTGACCATTGAAGACGCTGCGGAACTGCAGCTGA
AACAGGAGCACGTGGTCAGGCTGGAAACAAGACCGGCAAACATAGAAGGCCACGGCGAAATAACGGCCCGTGATCTGGTG
AAAAACTGCCTGCGGATGCGTCCGGACAGAATCATCGTGGGCGAAGTGCGTTCCGCCGAAGTGCTGGACATGCTGCAGGC
CATGAACACCGGTCATGACGGTTCACTGACCACAATCCACGCCAACAGCCCGCGTGACTGCCTGATGCGTCTTGAAACCA
TGGTGGCCATGTCGGGGCTGAACATCAGCACGCTGTCCCTTAAACGCTATATCACTTCCGCCGTTGACGTCATTGTGCAG
GTTTCGCGGCTTTCTGACGGTTCGCGCAAACTGACCAGTCTGACAGAAATAACCGGTATGGAAGGAGAGGCCGTGACCAT
GCAGGAAATATTCTCCTTCCGGCAGACCGGTGTGGGGCAGGACGGCAAGGTCACAGGCAGCTTTGCCGGTGCCGGCATCA
GACCAAGATTCGCCTCGCGGCTTGCCGCGGCGGGCATTCCGCTGGACGGGACCCTGTTTGAAAAAGGCATGGAACAGGCG
TGA

Upstream 100 bases:

>100_bases
GAAGCCTGCTGGCCAGATTCATGCCGCGTCGTCCTTCCCGCGTGCGGACAACACAGGACGCGCCTTTGTCCGGCAACCTT
CAGACCGCGGAGAGCTGACC

Downstream 100 bases:

>100_bases
CACCGCCTGAACAGGAGAAACCGCATGATTCTCATAGCCACGCTGCTGGCGGTAGCCGCCTGCTTTATTCTGGTGCTGGG
TACCGGAAACCTGCTGTCCG

Product: type II/IV secretion system protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 560; Mature: 560

Protein sequence:

>560_residues
MKLAERLMRSTRRTPAPLSGVPVRSEDDALEQAFRRSPQPATPRTPHTDSAHAETTGTVSAPAGTHPPDMRHASAPAHAR
QPAAPAEHTGALQSPPDADVPAPASSGAARTAMRQQAFRPARSGNSTVSCAAPQEEGYYEAKARVHARVLELMDISAAEH
LNPEVLGTEIRRLVEKVLHEEYRQIPLNSQERRRVAEEIQHEILGLGPLEPLLADPSVSDILVNNYRQVYVERGGKLHKA
GVRFHDDEHLRQIIDRIVSRIGRRVDESSPMVDARLADGSRVNAIIPPLALDGPSLSIRRFSKDPLELEDLIRFKALTPE
MGEVLRGIVKARLNIIVSGGTGSGKTTMLNCLSRFVPHDERIVTIEDAAELQLKQEHVVRLETRPANIEGHGEITARDLV
KNCLRMRPDRIIVGEVRSAEVLDMLQAMNTGHDGSLTTIHANSPRDCLMRLETMVAMSGLNISTLSLKRYITSAVDVIVQ
VSRLSDGSRKLTSLTEITGMEGEAVTMQEIFSFRQTGVGQDGKVTGSFAGAGIRPRFASRLAAAGIPLDGTLFEKGMEQA

Sequences:

>Translated_560_residues
MKLAERLMRSTRRTPAPLSGVPVRSEDDALEQAFRRSPQPATPRTPHTDSAHAETTGTVSAPAGTHPPDMRHASAPAHAR
QPAAPAEHTGALQSPPDADVPAPASSGAARTAMRQQAFRPARSGNSTVSCAAPQEEGYYEAKARVHARVLELMDISAAEH
LNPEVLGTEIRRLVEKVLHEEYRQIPLNSQERRRVAEEIQHEILGLGPLEPLLADPSVSDILVNNYRQVYVERGGKLHKA
GVRFHDDEHLRQIIDRIVSRIGRRVDESSPMVDARLADGSRVNAIIPPLALDGPSLSIRRFSKDPLELEDLIRFKALTPE
MGEVLRGIVKARLNIIVSGGTGSGKTTMLNCLSRFVPHDERIVTIEDAAELQLKQEHVVRLETRPANIEGHGEITARDLV
KNCLRMRPDRIIVGEVRSAEVLDMLQAMNTGHDGSLTTIHANSPRDCLMRLETMVAMSGLNISTLSLKRYITSAVDVIVQ
VSRLSDGSRKLTSLTEITGMEGEAVTMQEIFSFRQTGVGQDGKVTGSFAGAGIRPRFASRLAAAGIPLDGTLFEKGMEQA
>Mature_560_residues
MKLAERLMRSTRRTPAPLSGVPVRSEDDALEQAFRRSPQPATPRTPHTDSAHAETTGTVSAPAGTHPPDMRHASAPAHAR
QPAAPAEHTGALQSPPDADVPAPASSGAARTAMRQQAFRPARSGNSTVSCAAPQEEGYYEAKARVHARVLELMDISAAEH
LNPEVLGTEIRRLVEKVLHEEYRQIPLNSQERRRVAEEIQHEILGLGPLEPLLADPSVSDILVNNYRQVYVERGGKLHKA
GVRFHDDEHLRQIIDRIVSRIGRRVDESSPMVDARLADGSRVNAIIPPLALDGPSLSIRRFSKDPLELEDLIRFKALTPE
MGEVLRGIVKARLNIIVSGGTGSGKTTMLNCLSRFVPHDERIVTIEDAAELQLKQEHVVRLETRPANIEGHGEITARDLV
KNCLRMRPDRIIVGEVRSAEVLDMLQAMNTGHDGSLTTIHANSPRDCLMRLETMVAMSGLNISTLSLKRYITSAVDVIVQ
VSRLSDGSRKLTSLTEITGMEGEAVTMQEIFSFRQTGVGQDGKVTGSFAGAGIRPRFASRLAAAGIPLDGTLFEKGMEQA

Specific function: Unknown

COG id: COG4962

COG function: function code U; Flp pilus assembly protein, ATPase CpaF

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GSP E family [H]

Homologues:

Organism=Escherichia coli, GI1786296, Length=177, Percent_Identity=29.9435028248588, Blast_Score=63, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022399
- InterPro:   IPR001482 [H]

Pfam domain/function: PF00437 GSPII_E [H]

EC number: NA

Molecular weight: Translated: 61129; Mature: 61129

Theoretical pI: Translated: 7.34; Mature: 7.34

Prosite motif: PS00227 TUBULIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLAERLMRSTRRTPAPLSGVPVRSEDDALEQAFRRSPQPATPRTPHTDSAHAETTGTVS
CCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEE
APAGTHPPDMRHASAPAHARQPAAPAEHTGALQSPPDADVPAPASSGAARTAMRQQAFRP
CCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCC
ARSGNSTVSCAAPQEEGYYEAKARVHARVLELMDISAAEHLNPEVLGTEIRRLVEKVLHE
CCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
EYRQIPLNSQERRRVAEEIQHEILGLGPLEPLLADPSVSDILVNNYRQVYVERGGKLHKA
HHHCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHCCCCHHHHHHHHHHHHHHHCCCEEEEC
GVRFHDDEHLRQIIDRIVSRIGRRVDESSPMVDARLADGSRVNAIIPPLALDGPSLSIRR
CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCEEECCCEECCCCCCCCEE
FSKDPLELEDLIRFKALTPEMGEVLRGIVKARLNIIVSGGTGSGKTTMLNCLSRFVPHDE
CCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHEEEEEECCCCCCHHHHHHHHHHHCCCCC
RIVTIEDAAELQLKQEHVVRLETRPANIEGHGEITARDLVKNCLRMRPDRIIVGEVRSAE
EEEEECCHHHHHHHHHHEEEEECCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEECCCHHH
VLDMLQAMNTGHDGSLTTIHANSPRDCLMRLETMVAMSGLNISTLSLKRYITSAVDVIVQ
HHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
VSRLSDGSRKLTSLTEITGMEGEAVTMQEIFSFRQTGVGQDGKVTGSFAGAGIRPRFASR
HHHCCCCHHHHHHHHHHCCCCCCEEEHHHHHHHHHHCCCCCCCEEECCCCCCCCHHHHHH
LAAAGIPLDGTLFEKGMEQA
HHHCCCCCCHHHHHHCCCCC
>Mature Secondary Structure
MKLAERLMRSTRRTPAPLSGVPVRSEDDALEQAFRRSPQPATPRTPHTDSAHAETTGTVS
CCHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEE
APAGTHPPDMRHASAPAHARQPAAPAEHTGALQSPPDADVPAPASSGAARTAMRQQAFRP
CCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCC
ARSGNSTVSCAAPQEEGYYEAKARVHARVLELMDISAAEHLNPEVLGTEIRRLVEKVLHE
CCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
EYRQIPLNSQERRRVAEEIQHEILGLGPLEPLLADPSVSDILVNNYRQVYVERGGKLHKA
HHHCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHCCCCHHHHHHHHHHHHHHHCCCEEEEC
GVRFHDDEHLRQIIDRIVSRIGRRVDESSPMVDARLADGSRVNAIIPPLALDGPSLSIRR
CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCEEECCCEECCCCCCCCEE
FSKDPLELEDLIRFKALTPEMGEVLRGIVKARLNIIVSGGTGSGKTTMLNCLSRFVPHDE
CCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHEEEEEECCCCCCHHHHHHHHHHHCCCCC
RIVTIEDAAELQLKQEHVVRLETRPANIEGHGEITARDLVKNCLRMRPDRIIVGEVRSAE
EEEEECCHHHHHHHHHHEEEEECCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEECCCHHH
VLDMLQAMNTGHDGSLTTIHANSPRDCLMRLETMVAMSGLNISTLSLKRYITSAVDVIVQ
HHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
VSRLSDGSRKLTSLTEITGMEGEAVTMQEIFSFRQTGVGQDGKVTGSFAGAGIRPRFASR
HHHCCCCHHHHHHHHHHCCCCCCEEEHHHHHHHHHHCCCCCCCEEECCCCCCCCHHHHHH
LAAAGIPLDGTLFEKGMEQA
HHHCCCCCCHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12218036; 9634230 [H]