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The map label for this gene is yrbD [C]

Identifier: 78357342

GI number: 78357342

Start: 2319041

End: 2319487

Strand: Direct

Name: yrbD [C]

Synonym: Dde_2299

Alternate gene names: 78357342

Gene position: 2319041-2319487 (Clockwise)

Preceding gene: 78357341

Following gene: 78357343

Centisome position: 62.17

GC content: 52.57

Gene sequence:

>447_bases
ATGAACAAGTACACAAAAGAAACCTCCGTCGGCATTTTTGTGCTCATCGGCCTTCTGTGCCTCGGGTACGTCACCGTCAA
GCTGGGAAAAATGGAAGTATTTTCCAGTGAAGGATATACCGTTCAGGCCCGCTTCACTTCCGTGACCGGTCTGCGGGTAG
GAGCCGACGTTGAAATTTCCGGCGTGCCTGTCGGCAAGGTCAGCGGCATCAATCTTGACCAGATGGACAACGTGGCGGTG
GTCAGTCTGAGGCTGCGCCCCGATGTTGAGTTATCGGAAGACACCATCGCATCCGTCAAGACCAGCGGACTTATCGGCGA
CAAGTATGTAAAGCTGTCACCCGGCGGTGCCATGGACCTGCTGAAAGAGGGTGACGAGATACTGGAAACCGAATCGGCTC
TGGATATTGAAGAATTAATCAGCAAATACGTGTTCGGAAAGGTGTAA

Upstream 100 bases:

>100_bases
CGCAAAGCGTTGACGCTCCTCTGGGCGAAACAGTACGTAAAGCGCTGGCCGACTGGCTGGACAGCTAACCGCAACCTTTT
GTGAAGCGCACGGGAAAAGT

Downstream 100 bases:

>100_bases
CATGCTTGCAATGCGTTCCGTTTTCACCAGAAGCCTTCTGGCGTTTGTTTTCTGTACCGGGCTGCTTTGCACCGCCCCGC
AGGCGCAGGCGGCAGACCCC

Product: putative ABC transport system substrate-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 148; Mature: 148

Protein sequence:

>148_residues
MNKYTKETSVGIFVLIGLLCLGYVTVKLGKMEVFSSEGYTVQARFTSVTGLRVGADVEISGVPVGKVSGINLDQMDNVAV
VSLRLRPDVELSEDTIASVKTSGLIGDKYVKLSPGGAMDLLKEGDEILETESALDIEELISKYVFGKV

Sequences:

>Translated_148_residues
MNKYTKETSVGIFVLIGLLCLGYVTVKLGKMEVFSSEGYTVQARFTSVTGLRVGADVEISGVPVGKVSGINLDQMDNVAV
VSLRLRPDVELSEDTIASVKTSGLIGDKYVKLSPGGAMDLLKEGDEILETESALDIEELISKYVFGKV
>Mature_148_residues
MNKYTKETSVGIFVLIGLLCLGYVTVKLGKMEVFSSEGYTVQARFTSVTGLRVGADVEISGVPVGKVSGINLDQMDNVAV
VSLRLRPDVELSEDTIASVKTSGLIGDKYVKLSPGGAMDLLKEGDEILETESALDIEELISKYVFGKV

Specific function: Could be part of an ABC transporter complex [H]

COG id: COG1463

COG function: function code Q; ABC-type transport system involved in resistance to organic solvents, periplasmic component

Gene ontology:

Cell location: Cell inner membrane; Single-pass type II membrane protein; Periplasmic side (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the mlaD family [H]

Homologues:

Organism=Escherichia coli, GI1789584, Length=153, Percent_Identity=34.640522875817, Blast_Score=73, Evalue=7e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003399 [H]

Pfam domain/function: PF02470 MCE [H]

EC number: NA

Molecular weight: Translated: 15867; Mature: 15867

Theoretical pI: Translated: 4.43; Mature: 4.43

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKYTKETSVGIFVLIGLLCLGYVTVKLGKMEVFSSEGYTVQARFTSVTGLRVGADVEIS
CCCCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEECCCCCEEEEEEEEEEEEEECCCEEEC
GVPVGKVSGINLDQMDNVAVVSLRLRPDVELSEDTIASVKTSGLIGDKYVKLSPGGAMDL
CCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCHHHHHHHCCCCCCCEEEEECCCCHHHH
LKEGDEILETESALDIEELISKYVFGKV
HHCCHHHHHCCCCCCHHHHHHHHHCCCC
>Mature Secondary Structure
MNKYTKETSVGIFVLIGLLCLGYVTVKLGKMEVFSSEGYTVQARFTSVTGLRVGADVEIS
CCCCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEECCCCCEEEEEEEEEEEEEECCCEEEC
GVPVGKVSGINLDQMDNVAVVSLRLRPDVELSEDTIASVKTSGLIGDKYVKLSPGGAMDL
CCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCHHHHHHHCCCCCCCEEEEECCCCHHHH
LKEGDEILETESALDIEELISKYVFGKV
HHCCHHHHHCCCCCCHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]