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The map label for this gene is yebA [H]

Identifier: 78357246

GI number: 78357246

Start: 2243480

End: 2244421

Strand: Reverse

Name: yebA [H]

Synonym: Dde_2203

Alternate gene names: 78357246

Gene position: 2244421-2243480 (Counterclockwise)

Preceding gene: 78357247

Following gene: 78357245

Centisome position: 60.17

GC content: 57.86

Gene sequence:

>942_bases
ATGATGAGTCATGACCGTTTGTTTTCGCGCAGTGGTGGTGCCCGGCAGGGCAGACCGCAGGCATTTTTCTTTTCCGGCGG
GATTGTCTTTCTTTCCGTGCTGGCGCTTTTTCTGCTGTCCGGTGCCCGGACGGCAAGCGGTGCTGTGCGTCTGGAAGCGC
CGGAAGTTGTATTTCCCGGTCAGCCTTTTGTTGTCACCCTGATAGCCGATGAACCTGTGGAAAAAGTGACTGTGCAGTGG
AACGGCGAGGCCATTGATCTGCCTGTGGAGGTGCGGCAGACCGGAGCCGGTGAAGCCCGCTATGCCGCTGCTCTTCTTGG
TGTGGGGCTTTCGCAAAAACCGGGCAGGGTGCCCCTGAGGGTGGACGCGGTGGTGTCCGGTGCCGCGCACAGCAGCCGCC
GCGAACTGAAAGTGCGGGATAAGGAATACCCCGTGCAGCGTCTGACGGTAAAAAAACGCTATGTGGACGTTGCCAGGGCA
GACCTTGATCGTCATGAAAAAGAGCGGGCAAGAGTAAAGCAGGCCCTTGCATTGCGTACCGGTATGCGGTTCTGGGATTT
GCCGTTGCACCGGCCTGTGCCCGGGGGTGTTTCCAGCGTTTTCGGCCTGCGGCGTTTTTTTAATGACCAGCCGCGCAAAC
CGCATTCCGGCATTGATCTGCGCGGTGCACAGGGTAGCCCCATACAGGCTTGTGCCGAAGGGGTGGTTGTGTTGGCCGAG
AATCATTTTTTTGCAGGCAATTCGGTGTACATTGACCACGGCGAAGGAGTGGTCAGCATGTATTTTCATATGTCCAGACT
GGACGTTCGCGCAGGCGAACGTGTGAAAAAGGGACAGGTGATAGGTGCCGTAGGCAGCACCGGAAGGGTCACCGGGCCTC
ATCTGCATTTCGGCCTGAGCCTGCAGGGGGTTTTTGTAGACCCCATGCCTTTGTTCGAGTAA

Upstream 100 bases:

>100_bases
GGAGCGGCTGATGTGGCGGTGACGGCTGTGCACGCCGTTTCTGCGGCAGAGGCCGCCGGTATGCCGGCAGGTGGGAAAAA
AATCAAAGGAGACCGTTCCG

Downstream 100 bases:

>100_bases
GTGAGCCTGCACGGCAGCGGAGAATAATAATGACCGGAACCGGAACGACGGGTTTTGAAGAACAGCTGGCGCGCCTGCAG
GAGATAGTCCGCAGGCTGGA

Product: M24/M37 family peptidase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 313; Mature: 313

Protein sequence:

>313_residues
MMSHDRLFSRSGGARQGRPQAFFFSGGIVFLSVLALFLLSGARTASGAVRLEAPEVVFPGQPFVVTLIADEPVEKVTVQW
NGEAIDLPVEVRQTGAGEARYAAALLGVGLSQKPGRVPLRVDAVVSGAAHSSRRELKVRDKEYPVQRLTVKKRYVDVARA
DLDRHEKERARVKQALALRTGMRFWDLPLHRPVPGGVSSVFGLRRFFNDQPRKPHSGIDLRGAQGSPIQACAEGVVVLAE
NHFFAGNSVYIDHGEGVVSMYFHMSRLDVRAGERVKKGQVIGAVGSTGRVTGPHLHFGLSLQGVFVDPMPLFE

Sequences:

>Translated_313_residues
MMSHDRLFSRSGGARQGRPQAFFFSGGIVFLSVLALFLLSGARTASGAVRLEAPEVVFPGQPFVVTLIADEPVEKVTVQW
NGEAIDLPVEVRQTGAGEARYAAALLGVGLSQKPGRVPLRVDAVVSGAAHSSRRELKVRDKEYPVQRLTVKKRYVDVARA
DLDRHEKERARVKQALALRTGMRFWDLPLHRPVPGGVSSVFGLRRFFNDQPRKPHSGIDLRGAQGSPIQACAEGVVVLAE
NHFFAGNSVYIDHGEGVVSMYFHMSRLDVRAGERVKKGQVIGAVGSTGRVTGPHLHFGLSLQGVFVDPMPLFE
>Mature_313_residues
MMSHDRLFSRSGGARQGRPQAFFFSGGIVFLSVLALFLLSGARTASGAVRLEAPEVVFPGQPFVVTLIADEPVEKVTVQW
NGEAIDLPVEVRQTGAGEARYAAALLGVGLSQKPGRVPLRVDAVVSGAAHSSRRELKVRDKEYPVQRLTVKKRYVDVARA
DLDRHEKERARVKQALALRTGMRFWDLPLHRPVPGGVSSVFGLRRFFNDQPRKPHSGIDLRGAQGSPIQACAEGVVVLAE
NHFFAGNSVYIDHGEGVVSMYFHMSRLDVRAGERVKKGQVIGAVGSTGRVTGPHLHFGLSLQGVFVDPMPLFE

Specific function: Could be involved in cell wall degradation or formation [H]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI87081989, Length=114, Percent_Identity=37.719298245614, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI1789099, Length=119, Percent_Identity=36.1344537815126, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR013731
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF08525 OapA_N; PF01551 Peptidase_M23 [H]

EC number: 3.4.24.- [C]

Molecular weight: Translated: 34139; Mature: 34139

Theoretical pI: Translated: 10.67; Mature: 10.67

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMSHDRLFSRSGGARQGRPQAFFFSGGIVFLSVLALFLLSGARTASGAVRLEAPEVVFPG
CCCCHHHHHCCCCCCCCCCCEEEEECHHHHHHHHHHHHHCCCCCCCCEEEECCCCEEECC
QPFVVTLIADEPVEKVTVQWNGEAIDLPVEVRQTGAGEARYAAALLGVGLSQKPGRVPLR
CCEEEEEEECCCCEEEEEEECCCEEECCHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCEE
VDAVVSGAAHSSRRELKVRDKEYPVQRLTVKKRYVDVARADLDRHEKERARVKQALALRT
EEEEECCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GMRFWDLPLHRPVPGGVSSVFGLRRFFNDQPRKPHSGIDLRGAQGSPIQACAEGVVVLAE
CCEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCCCHHHHHCCCEEEEEE
NHFFAGNSVYIDHGEGVVSMYFHMSRLDVRAGERVKKGQVIGAVGSTGRVTGPHLHFGLS
CEEECCCEEEEECCCCEEEEEEHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCEEEEEEE
LQGVFVDPMPLFE
EEEEEECCCCCCC
>Mature Secondary Structure
MMSHDRLFSRSGGARQGRPQAFFFSGGIVFLSVLALFLLSGARTASGAVRLEAPEVVFPG
CCCCHHHHHCCCCCCCCCCCEEEEECHHHHHHHHHHHHHCCCCCCCCEEEECCCCEEECC
QPFVVTLIADEPVEKVTVQWNGEAIDLPVEVRQTGAGEARYAAALLGVGLSQKPGRVPLR
CCEEEEEEECCCCEEEEEEECCCEEECCHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCEE
VDAVVSGAAHSSRRELKVRDKEYPVQRLTVKKRYVDVARADLDRHEKERARVKQALALRT
EEEEECCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GMRFWDLPLHRPVPGGVSSVFGLRRFFNDQPRKPHSGIDLRGAQGSPIQACAEGVVVLAE
CCEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCEEECCCCCHHHHHCCCEEEEEE
NHFFAGNSVYIDHGEGVVSMYFHMSRLDVRAGERVKKGQVIGAVGSTGRVTGPHLHFGLS
CEEECCCEEEEECCCCEEEEEEHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCEEEEEEE
LQGVFVDPMPLFE
EEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]