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The map label for this gene is xseB

Identifier: 78357245

GI number: 78357245

Start: 2243208

End: 2243450

Strand: Reverse

Name: xseB

Synonym: Dde_2202

Alternate gene names: 78357245

Gene position: 2243450-2243208 (Counterclockwise)

Preceding gene: 78357246

Following gene: 78357244

Centisome position: 60.14

GC content: 58.85

Gene sequence:

>243_bases
ATGACCGGAACCGGAACGACGGGTTTTGAAGAACAGCTGGCGCGCCTGCAGGAGATAGTCCGCAGGCTGGAGACCGGCGA
ACTGCCTCTGGAAGAGGGCGTGGCGCTGTACAAGGAAGGTCTGGAACTGGCTGCGGGGTGCCGCAAACGGTTGCAAACGG
CGCGCAATGATATCAAAGTATTCAGCGACGGCGTATTGAAGGACTTTGACATGCCGGAAGATTCTCCGGCGGCGGATGAC
TGA

Upstream 100 bases:

>100_bases
CCGGGCCTCATCTGCATTTCGGCCTGAGCCTGCAGGGGGTTTTTGTAGACCCCATGCCTTTGTTCGAGTAAGTGAGCCTG
CACGGCAGCGGAGAATAATA

Downstream 100 bases:

>100_bases
ATCTGTGTGCGCCGGCAGGTTTTTTGCGTTCTGCAGCGGCAGGCGACGGACAGCAACTTTTACACAGGGACGTGAACATG
TCTCATGCGGACGAAATGAC

Product: exodeoxyribonuclease VII small subunit

Products: NA

Alternate protein names: Exodeoxyribonuclease VII small subunit; Exonuclease VII small subunit

Number of amino acids: Translated: 80; Mature: 79

Protein sequence:

>80_residues
MTGTGTTGFEEQLARLQEIVRRLETGELPLEEGVALYKEGLELAAGCRKRLQTARNDIKVFSDGVLKDFDMPEDSPAADD

Sequences:

>Translated_80_residues
MTGTGTTGFEEQLARLQEIVRRLETGELPLEEGVALYKEGLELAAGCRKRLQTARNDIKVFSDGVLKDFDMPEDSPAADD
>Mature_79_residues
TGTGTTGFEEQLARLQEIVRRLETGELPLEEGVALYKEGLELAAGCRKRLQTARNDIKVFSDGVLKDFDMPEDSPAADD

Specific function: Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides

COG id: COG1722

COG function: function code L; Exonuclease VII small subunit

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the xseB family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): EX7S_DESDG (Q30Z97)

Other databases:

- EMBL:   CP000112
- RefSeq:   YP_388694.1
- ProteinModelPortal:   Q30Z97
- SMR:   Q30Z97
- STRING:   Q30Z97
- GeneID:   3757212
- GenomeReviews:   CP000112_GR
- KEGG:   dde:Dde_2202
- NMPDR:   fig|207559.3.peg.2158
- eggNOG:   NOG151000
- HOGENOM:   HBG728416
- OMA:   TARNDIK
- ProtClustDB:   PRK14067
- BioCyc:   DDES207559:DDE_2202-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00337
- InterPro:   IPR003761
- PIRSF:   PIRSF006488
- ProDom:   PD028235

Pfam domain/function: PF02609 Exonuc_VII_S

EC number: =3.1.11.6

Molecular weight: Translated: 8814; Mature: 8683

Theoretical pI: Translated: 4.20; Mature: 4.20

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTGTGTTGFEEQLARLQEIVRRLETGELPLEEGVALYKEGLELAAGCRKRLQTARNDIKV
CCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FSDGVLKDFDMPEDSPAADD
HHCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
TGTGTTGFEEQLARLQEIVRRLETGELPLEEGVALYKEGLELAAGCRKRLQTARNDIKV
CCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FSDGVLKDFDMPEDSPAADD
HHCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA