| Definition | Desulfovibrio desulfuricans subsp. desulfuricans str. G20 chromosome, complete genome. |
|---|---|
| Accession | NC_007519 |
| Length | 3,730,232 |
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The map label for this gene is 78357219
Identifier: 78357219
GI number: 78357219
Start: 2216061
End: 2217695
Strand: Reverse
Name: 78357219
Synonym: Dde_2176
Alternate gene names: NA
Gene position: 2217695-2216061 (Counterclockwise)
Preceding gene: 78357221
Following gene: 78357218
Centisome position: 59.45
GC content: 61.04
Gene sequence:
>1635_bases ATGCGCAGGATAGTAATTGTGGGGGAAGGCGCCGCAGCGGCCAAGCTGGCGGCCCGGACAAGACGGATGACGGAGAACGC CGAGGTGAATCTGGTGCTGTCTTCCGCCGGCGACGCCGGCAAGGGGGTTTTCGGCAGCTATGCGAAAAAGAACCGCATTT CGCTTGAACAGATGAAAACCCGTGATGTGGGCGTGCTGGAAACGGATGAGCTGGATTTTGATTTTGAAAAGCGTGAAATC CACGTGCGCTCGGCCAGAGGCTGGCTGCCCATGCGTTTTGACCAGCTGGTGCTGGAAATAAACACCGTTCCCCGTGTACC CAGAGCGTTGCGCCGCTGTGACAATGTTGTTCCCTGGCCGGTGGGAGATGTGGCGGCGCTTGATACCATTCTGGCAGAAA TCCGCCCCTCTGTTGCTGTAGTGGTGGGAAGCAGCCGTCAGGCTGTGGAACTTGTCCGGCTTCTCGCCTCTTCGGACGTT CCCGTGCGCTGGTTGCGCACCGCCCCTGCGCAGTCACCGGTGCTTGATGCCGATATGTGGTTCCATGCCGATTCGCTGAT AACTGCCTGTGCCGGCGGAGTACAGATTCTCGACTGGAGCAGTTTCCGCCTTGACCAGCTGGCCACGGTGACGGACGCGG ACGGCCTGCTGGTTTCACTGGAGTCGCCGGAAGCACAAAGCGTGAGCGGCGACATGTTTTTCTGGGCGGACCCGCAGCGG GCCGTGCATCCGCTGCTGGCCAACGAAGGCATCGAGCTTGCCGAAAACGGCCTGCTGGCTGTGGATGACAATTTCATGAC CGGTATACCGGATGTATACGCCATCGGCAGTGCTGTTTCCGTAAAGCACTGCGGGGCAGCGCAGCTGCCTGTGGTGGCCG GTGAAGAATCTGTTTTCTCCATGGCCCGCCATGTGGCTGATGTTCTTTCCGGTGAACAGCCTTTCTCTGCCGGGGCCATG ATCGCTCCGGTGACGCAGGCTTTTCCCGGCGGCAGGCTGTTTAAAGCCGGTACCGGACTGGCCGAGGCTCTGGCTGCCGG CATCGAAGCCGAATTTGCCATGCTGAAAACCGGCGGCGGGGCCGCAGGGCAGGCACCCTGTGCCGTAAAGCTGGTGGTGG ATAAATCCACCCGCCGCGTTCTGGGGGTTCAGGCTGTATCGGGTGACCCCTGCGGGTTGTCCGACGGATTCGCTTCTGCC GGGGCGCTGGCACTGTCCGGCGGCATGACGGTGGAAATGCTGGCGGCACTGGACCTGCCCGGCGAAAGCGGGCGCCTGCT GCGTTCCGCTGCCTGCATTGTTGATAACAAGCTGCGGGGCAAAGTGTTCGGCATCAGCCCTGATGAACTGATAGCTTCCC GCGCTGCCGGTGCGGAGTTTTTCACCCTTGATCTGCGGTCGCAGCCGGAGTGGAAAAAAGGACATATCGAAGACGCCTGC AACATTCCTCTGCCCCAGCTGAAAGAGCGGCTGCAGGATGAAGTGCCCAGATTCACCCCGCTGGTCATCGTCGGCCGCAG CTCTGATGATGCGTGGAGTGTGGCCTGTTATCTGGCAGGGCTGGGCGCAGGGCATGTCTATGTGCTGGACGGCGGCATGG ATATGTGGCCCTATGAAACCGTCTCGCAGGGCTGA
Upstream 100 bases:
>100_bases TAGGGTTTTATAAAAAAATAACTGATGCTGAAGAGCGCCTGCCGCCCCGTATCAGACGGTTGTGCGGCAGGATGTCCGGT CACAGGAAGGAGCACGGATA
Downstream 100 bases:
>100_bases TGCAGTGGGTACTGTCTGCAGAATGCCCGGTGTGGCATGTGATTTTTATGTATCGGGGCACTGCCTGTACGAAGAAGAGC TGAACCCCGGTCTGGACGAG
Product: rhodanese-like protein
Products: NA
Alternate protein names: Co A Disulfide Reductase; NAD(FAD)-Dependent Dehydrogenase; Pyridine Nucleotide-Disulphide Oxidoreductase; Rhodanese-Like Domain-Containing Protein; Rhodanese-Like Protein; CoA-Disulfide Reductase
Number of amino acids: Translated: 544; Mature: 544
Protein sequence:
>544_residues MRRIVIVGEGAAAAKLAARTRRMTENAEVNLVLSSAGDAGKGVFGSYAKKNRISLEQMKTRDVGVLETDELDFDFEKREI HVRSARGWLPMRFDQLVLEINTVPRVPRALRRCDNVVPWPVGDVAALDTILAEIRPSVAVVVGSSRQAVELVRLLASSDV PVRWLRTAPAQSPVLDADMWFHADSLITACAGGVQILDWSSFRLDQLATVTDADGLLVSLESPEAQSVSGDMFFWADPQR AVHPLLANEGIELAENGLLAVDDNFMTGIPDVYAIGSAVSVKHCGAAQLPVVAGEESVFSMARHVADVLSGEQPFSAGAM IAPVTQAFPGGRLFKAGTGLAEALAAGIEAEFAMLKTGGGAAGQAPCAVKLVVDKSTRRVLGVQAVSGDPCGLSDGFASA GALALSGGMTVEMLAALDLPGESGRLLRSAACIVDNKLRGKVFGISPDELIASRAAGAEFFTLDLRSQPEWKKGHIEDAC NIPLPQLKERLQDEVPRFTPLVIVGRSSDDAWSVACYLAGLGAGHVYVLDGGMDMWPYETVSQG
Sequences:
>Translated_544_residues MRRIVIVGEGAAAAKLAARTRRMTENAEVNLVLSSAGDAGKGVFGSYAKKNRISLEQMKTRDVGVLETDELDFDFEKREI HVRSARGWLPMRFDQLVLEINTVPRVPRALRRCDNVVPWPVGDVAALDTILAEIRPSVAVVVGSSRQAVELVRLLASSDV PVRWLRTAPAQSPVLDADMWFHADSLITACAGGVQILDWSSFRLDQLATVTDADGLLVSLESPEAQSVSGDMFFWADPQR AVHPLLANEGIELAENGLLAVDDNFMTGIPDVYAIGSAVSVKHCGAAQLPVVAGEESVFSMARHVADVLSGEQPFSAGAM IAPVTQAFPGGRLFKAGTGLAEALAAGIEAEFAMLKTGGGAAGQAPCAVKLVVDKSTRRVLGVQAVSGDPCGLSDGFASA GALALSGGMTVEMLAALDLPGESGRLLRSAACIVDNKLRGKVFGISPDELIASRAAGAEFFTLDLRSQPEWKKGHIEDAC NIPLPQLKERLQDEVPRFTPLVIVGRSSDDAWSVACYLAGLGAGHVYVLDGGMDMWPYETVSQG >Mature_544_residues MRRIVIVGEGAAAAKLAARTRRMTENAEVNLVLSSAGDAGKGVFGSYAKKNRISLEQMKTRDVGVLETDELDFDFEKREI HVRSARGWLPMRFDQLVLEINTVPRVPRALRRCDNVVPWPVGDVAALDTILAEIRPSVAVVVGSSRQAVELVRLLASSDV PVRWLRTAPAQSPVLDADMWFHADSLITACAGGVQILDWSSFRLDQLATVTDADGLLVSLESPEAQSVSGDMFFWADPQR AVHPLLANEGIELAENGLLAVDDNFMTGIPDVYAIGSAVSVKHCGAAQLPVVAGEESVFSMARHVADVLSGEQPFSAGAM IAPVTQAFPGGRLFKAGTGLAEALAAGIEAEFAMLKTGGGAAGQAPCAVKLVVDKSTRRVLGVQAVSGDPCGLSDGFASA GALALSGGMTVEMLAALDLPGESGRLLRSAACIVDNKLRGKVFGISPDELIASRAAGAEFFTLDLRSQPEWKKGHIEDAC NIPLPQLKERLQDEVPRFTPLVIVGRSSDDAWSVACYLAGLGAGHVYVLDGGMDMWPYETVSQG
Specific function: Unknown
COG id: COG0446
COG function: function code R; Uncharacterized NAD(FAD)-dependent dehydrogenases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 57687; Mature: 57687
Theoretical pI: Translated: 4.75; Mature: 4.75
Prosite motif: PS50206 RHODANESE_3
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRRIVIVGEGAAAAKLAARTRRMTENAEVNLVLSSAGDAGKGVFGSYAKKNRISLEQMKT CCEEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCHHCCCCCHHHHHC RDVGVLETDELDFDFEKREIHVRSARGWLPMRFDQLVLEINTVPRVPRALRRCDNVVPWP CCCCEEECCCCCCCCCCCEEEEECCCCCCCCCCEEEEEEECCCCHHHHHHHHHCCCCCCC VGDVAALDTILAEIRPSVAVVVGSSRQAVELVRLLASSDVPVRWLRTAPAQSPVLDADMW CCHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHH FHADSLITACAGGVQILDWSSFRLDQLATVTDADGLLVSLESPEAQSVSGDMFFWADPQR CCHHHHHHHHCCCEEEEECCCCCHHHHEEEECCCCEEEEECCCCCCCCCCCEEEEECCHH AVHPLLANEGIELAENGLLAVDDNFMTGIPDVYAIGSAVSVKHCGAAQLPVVAGEESVFS HHHHHHHCCCCHHHCCCEEEECCCCCCCCCHHHHCCCCCEECCCCCCCCCEEECCHHHHH MARHVADVLSGEQPFSAGAMIAPVTQAFPGGRLFKAGTGLAEALAAGIEAEFAMLKTGGG HHHHHHHHHCCCCCCCCCCEEEHHHHCCCCCCEEECCCCHHHHHHHCCCCEEEEEECCCC AAGQAPCAVKLVVDKSTRRVLGVQAVSGDPCGLSDGFASAGALALSGGMTVEMLAALDLP CCCCCCEEEEEEECCCCCEEEEEEEECCCCCCCCCCCCCCCCEEECCCCEEEEEEEECCC GESGRLLRSAACIVDNKLRGKVFGISPDELIASRAAGAEFFTLDLRSQPEWKKGHIEDAC CCCCHHHHHHHHHCCCCCCCEEECCCHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCC NIPLPQLKERLQDEVPRFTPLVIVGRSSDDAWSVACYLAGLGAGHVYVLDGGMDMWPYET CCCCHHHHHHHHHHCCCCCCEEEEECCCCCHHEEEEEEECCCCCEEEEEECCCCCCCCHH VSQG CCCC >Mature Secondary Structure MRRIVIVGEGAAAAKLAARTRRMTENAEVNLVLSSAGDAGKGVFGSYAKKNRISLEQMKT CCEEEEEECCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCHHCCCCCHHHHHC RDVGVLETDELDFDFEKREIHVRSARGWLPMRFDQLVLEINTVPRVPRALRRCDNVVPWP CCCCEEECCCCCCCCCCCEEEEECCCCCCCCCCEEEEEEECCCCHHHHHHHHHCCCCCCC VGDVAALDTILAEIRPSVAVVVGSSRQAVELVRLLASSDVPVRWLRTAPAQSPVLDADMW CCHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHH FHADSLITACAGGVQILDWSSFRLDQLATVTDADGLLVSLESPEAQSVSGDMFFWADPQR CCHHHHHHHHCCCEEEEECCCCCHHHHEEEECCCCEEEEECCCCCCCCCCCEEEEECCHH AVHPLLANEGIELAENGLLAVDDNFMTGIPDVYAIGSAVSVKHCGAAQLPVVAGEESVFS HHHHHHHCCCCHHHCCCEEEECCCCCCCCCHHHHCCCCCEECCCCCCCCCEEECCHHHHH MARHVADVLSGEQPFSAGAMIAPVTQAFPGGRLFKAGTGLAEALAAGIEAEFAMLKTGGG HHHHHHHHHCCCCCCCCCCEEEHHHHCCCCCCEEECCCCHHHHHHHCCCCEEEEEECCCC AAGQAPCAVKLVVDKSTRRVLGVQAVSGDPCGLSDGFASAGALALSGGMTVEMLAALDLP CCCCCCEEEEEEECCCCCEEEEEEEECCCCCCCCCCCCCCCCEEECCCCEEEEEEEECCC GESGRLLRSAACIVDNKLRGKVFGISPDELIASRAAGAEFFTLDLRSQPEWKKGHIEDAC CCCCHHHHHHHHHCCCCCCCEEECCCHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCC NIPLPQLKERLQDEVPRFTPLVIVGRSSDDAWSVACYLAGLGAGHVYVLDGGMDMWPYET CCCCHHHHHHHHHHCCCCCCEEEEECCCCCHHEEEEEEECCCCCEEEEEECCCCCCCCHH VSQG CCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA