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The map label for this gene is clpS

Identifier: 78357143

GI number: 78357143

Start: 2150774

End: 2151088

Strand: Reverse

Name: clpS

Synonym: Dde_2100

Alternate gene names: 78357143

Gene position: 2151088-2150774 (Counterclockwise)

Preceding gene: 78357144

Following gene: 78357142

Centisome position: 57.67

GC content: 53.65

Gene sequence:

>315_bases
ATGAGTGACCGTAAGCTGTCCACCAGAGAGGACGCCGATGTCCTGCTGGAGGAGGAACTTAAAGAGCCGCGCCGGTTCAG
GGTGCTGCTGCATAATGATGACTATACGTCCATGGATTTTGTTGTGGCCGTACTGATTGATATTTTTCGTAAAAGCCGCG
AGCAGGCCATGTCGATAATGCTCAGCGTGCATGAAAAGGGTATAGGCGTGTGCGGCGTCTACACAGCCGAAGTAGCAGAA
ACCAAAGTAGCCATGGTACATGCCCGTGCCCGGGCCGAAGGTTTTCCGCTCCGGTGCAGCATGGAAGAGGTGTAA

Upstream 100 bases:

>100_bases
GAAGCGGCCTTGTCTCTGCTGGGCAGTATCGCCTGACCGTGGCCTCGACATCTGTGAACGTGACACTATACTGCTTTCTA
CGGGAGGCACGGAACAACCT

Downstream 100 bases:

>100_bases
TATGATCGGCAAGAGGCTTGAAGCCGTTTTATCCGTCGCGGTAAGCGAAGTGAAGGCGAGAAACCATGAGTATCTCACCC
TTGAGCATGTGCTGTATGCC

Product: ATP-dependent Clp protease adaptor protein ClpS

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 104; Mature: 103

Protein sequence:

>104_residues
MSDRKLSTREDADVLLEEELKEPRRFRVLLHNDDYTSMDFVVAVLIDIFRKSREQAMSIMLSVHEKGIGVCGVYTAEVAE
TKVAMVHARARAEGFPLRCSMEEV

Sequences:

>Translated_104_residues
MSDRKLSTREDADVLLEEELKEPRRFRVLLHNDDYTSMDFVVAVLIDIFRKSREQAMSIMLSVHEKGIGVCGVYTAEVAE
TKVAMVHARARAEGFPLRCSMEEV
>Mature_103_residues
SDRKLSTREDADVLLEEELKEPRRFRVLLHNDDYTSMDFVVAVLIDIFRKSREQAMSIMLSVHEKGIGVCGVYTAEVAET
KVAMVHARARAEGFPLRCSMEEV

Specific function: Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation

COG id: COG2127

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ClpS family

Homologues:

Organism=Escherichia coli, GI1787108, Length=97, Percent_Identity=50.5154639175258, Blast_Score=96, Evalue=4e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): CLPS_DESDG (Q30ZJ9)

Other databases:

- EMBL:   CP000112
- RefSeq:   YP_388592.1
- ProteinModelPortal:   Q30ZJ9
- SMR:   Q30ZJ9
- STRING:   Q30ZJ9
- GeneID:   3757108
- GenomeReviews:   CP000112_GR
- KEGG:   dde:Dde_2100
- NMPDR:   fig|207559.3.peg.2060
- eggNOG:   COG2127
- HOGENOM:   HBG644923
- OMA:   FVIHILE
- ProtClustDB:   CLSK705326
- BioCyc:   DDES207559:DDE_2100-MONOMER
- HAMAP:   MF_00302
- InterPro:   IPR022935
- InterPro:   IPR003769
- InterPro:   IPR014719
- Gene3D:   G3DSA:3.30.1390.10

Pfam domain/function: PF02617 ClpS; SSF54736 Ribosomal_L7/12_C/ClpS-like

EC number: NA

Molecular weight: Translated: 11875; Mature: 11744

Theoretical pI: Translated: 5.23; Mature: 5.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
5.8 %Met     (Translated Protein)
7.7 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
4.9 %Met     (Mature Protein)
6.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDRKLSTREDADVLLEEELKEPRRFRVLLHNDDYTSMDFVVAVLIDIFRKSREQAMSIM
CCCCCCCCCCCHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHH
LSVHEKGIGVCGVYTAEVAETKVAMVHARARAEGFPLRCSMEEV
HHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
>Mature Secondary Structure 
SDRKLSTREDADVLLEEELKEPRRFRVLLHNDDYTSMDFVVAVLIDIFRKSREQAMSIM
CCCCCCCCCCHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHH
LSVHEKGIGVCGVYTAEVAETKVAMVHARARAEGFPLRCSMEEV
HHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA