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The map label for this gene is yfiO [H]

Identifier: 78357108

GI number: 78357108

Start: 2109059

End: 2109790

Strand: Reverse

Name: yfiO [H]

Synonym: Dde_2065

Alternate gene names: 78357108

Gene position: 2109790-2109059 (Counterclockwise)

Preceding gene: 304570587

Following gene: 78357107

Centisome position: 56.56

GC content: 53.14

Gene sequence:

>732_bases
ATGCGTAGAACCATTGTACGCTTTATGGTGATGCTGTCGTTGCTGGCAACTCTTTCCGGCTGCGGCATCATTGACTATTT
TTTCCTGCCTCCGCCGGAAGACACCGCGCAGGAGCTTTTTGAATCCGGTAATGATGCCATGCGTGAAAAAGATTACGCAT
CCGCCACCGACTATTTCAGCAAGTTGAAAGATAACTTCCCCTTCAGTCCGTATGCCATCGAGGCCGAACTGTCGCTGGGG
GATGCATACTTTCTGGATGAAGAATACGCCATGGCGGCAGAGGCATATAAGGAATTTGAAACCCTGCATCCGCGGCATAA
AGCCATTCCGTATGTGCTTTTTCAGATAGGCAATGCCAACCTGAAAAGTTTTGTGTCCATTGACAGACCGCAGACCAATG
TTGCGGAGGCATACGAATACTTCAGCCGCGTGCGTGAGTCTTATCCGGGCAGCGAGTATGCCCAGAAAGCCGGCGAATTG
CTGGGAGAGTGCCGCAGGCTTATGGCCGAGCATGAACTCTTCGTGGCGGATTTTTACTGGCGTACCGGAAAATTCCGTTC
CGCGGCATCCCGCTATCAGCATGTGGCGCAGGAGTTTCCGGATGTGGAAGACCTGCGGGCGTATGCCGAGGAAAAAGGGA
AAATAGCCTATCTGCGTGCCACGGAAGAAAAGGCGCAGCAGGACAGAGACCGGCGCCACGGCTCGTGGAAGCAGTGGTTC
GAGTGGTTGTAA

Upstream 100 bases:

>100_bases
GCGGGCGATGTGCGTTCCAAGCTGTGCCGTCAGGTGACTACCGCCGTTGGCGACGGTGCCACAGCAGCCAATTCTGCTTT
CCTTTATCTGGAACAGCTTG

Downstream 100 bases:

>100_bases
CAGAACAATATCAAGGCGGCTGAGGCCGCCTTTTTTTATTTCTCCTGCGCGTCTTTGCAGTTGCGGCTGGTTACTGTATA
GTCCTTCAGGGGACATTGGT

Product: putative lipoprotein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 243; Mature: 243

Protein sequence:

>243_residues
MRRTIVRFMVMLSLLATLSGCGIIDYFFLPPPEDTAQELFESGNDAMREKDYASATDYFSKLKDNFPFSPYAIEAELSLG
DAYFLDEEYAMAAEAYKEFETLHPRHKAIPYVLFQIGNANLKSFVSIDRPQTNVAEAYEYFSRVRESYPGSEYAQKAGEL
LGECRRLMAEHELFVADFYWRTGKFRSAASRYQHVAQEFPDVEDLRAYAEEKGKIAYLRATEEKAQQDRDRRHGSWKQWF
EWL

Sequences:

>Translated_243_residues
MRRTIVRFMVMLSLLATLSGCGIIDYFFLPPPEDTAQELFESGNDAMREKDYASATDYFSKLKDNFPFSPYAIEAELSLG
DAYFLDEEYAMAAEAYKEFETLHPRHKAIPYVLFQIGNANLKSFVSIDRPQTNVAEAYEYFSRVRESYPGSEYAQKAGEL
LGECRRLMAEHELFVADFYWRTGKFRSAASRYQHVAQEFPDVEDLRAYAEEKGKIAYLRATEEKAQQDRDRRHGSWKQWF
EWL
>Mature_243_residues
MRRTIVRFMVMLSLLATLSGCGIIDYFFLPPPEDTAQELFESGNDAMREKDYASATDYFSKLKDNFPFSPYAIEAELSLG
DAYFLDEEYAMAAEAYKEFETLHPRHKAIPYVLFQIGNANLKSFVSIDRPQTNVAEAYEYFSRVRESYPGSEYAQKAGEL
LGECRRLMAEHELFVADFYWRTGKFRSAASRYQHVAQEFPDVEDLRAYAEEKGKIAYLRATEEKAQQDRDRRHGSWKQWF
EWL

Specific function: Unknown

COG id: COG4105

COG function: function code R; DNA uptake lipoprotein

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0169 (ComL) family [H]

Homologues:

Organism=Escherichia coli, GI1788947, Length=215, Percent_Identity=25.1162790697674, Blast_Score=80, Evalue=8e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017689
- InterPro:   IPR011990 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 28361; Mature: 28361

Theoretical pI: Translated: 4.88; Mature: 4.88

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS50005 TPR L=RR ; PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRRTIVRFMVMLSLLATLSGCGIIDYFFLPPPEDTAQELFESGNDAMREKDYASATDYFS
CHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
KLKDNFPFSPYAIEAELSLGDAYFLDEEYAMAAEAYKEFETLHPRHKAIPYVLFQIGNAN
HHHCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCC
LKSFVSIDRPQTNVAEAYEYFSRVRESYPGSEYAQKAGELLGECRRLMAEHELFVADFYW
HHHHHHCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RTGKFRSAASRYQHVAQEFPDVEDLRAYAEEKGKIAYLRATEEKAQQDRDRRHGSWKQWF
HCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCHHHHH
EWL
HCC
>Mature Secondary Structure
MRRTIVRFMVMLSLLATLSGCGIIDYFFLPPPEDTAQELFESGNDAMREKDYASATDYFS
CHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
KLKDNFPFSPYAIEAELSLGDAYFLDEEYAMAAEAYKEFETLHPRHKAIPYVLFQIGNAN
HHHCCCCCCCEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCC
LKSFVSIDRPQTNVAEAYEYFSRVRESYPGSEYAQKAGELLGECRRLMAEHELFVADFYW
HHHHHHCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RTGKFRSAASRYQHVAQEFPDVEDLRAYAEEKGKIAYLRATEEKAQQDRDRRHGSWKQWF
HCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCEEEEECCHHHHHHHHHHCCCCHHHHH
EWL
HCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]