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The map label for this gene is xerD [H]

Identifier: 78357014

GI number: 78357014

Start: 2014955

End: 2015884

Strand: Direct

Name: xerD [H]

Synonym: Dde_1971

Alternate gene names: 78357014

Gene position: 2014955-2015884 (Clockwise)

Preceding gene: 78357009

Following gene: 78357015

Centisome position: 54.02

GC content: 54.73

Gene sequence:

>930_bases
ATGCTGAAAAACTCTCAGAAAAATGAAGCTGCCGCCCCGCCCCACCCCATTGTTGACAGCTTTCTGCAGCATCTGCTTAT
TTCACGCGGACTTTCTGAAAACACGCTGTCGTCATACGGCACGGACCTTCAGAGCTTTCTCGATTTTCTGCACCATAAAA
AAAGCCGGCTTGAGGATGTGACGGACCAGAGCCTGCTTTTATATATCATGCACCTGCGGCGCAGAGGGCTATCAAGCAAG
TCGCTTGCCCGCCAGCTTGCCGCGCTTCGCGGACTGTTCCGCTACGGCACAGAACAGAATCTGCTGAGTGAAAATCCTTG
CAGATTTCTTGAAAATCCGAAAATTCCCAAGTCATTGCCCGAGTACCTCTCGCAGCAGGAAATTGCCGAAGTCCTCGCAC
AGCCCGACCTTAAAGAAAAGCTGGGCTTCCGCGACAGAACCATGCTGGAGCTTCTGTACGCTGCGGGACTGCGGGTATCA
GAACTTATCACTCTCAAGCCCCTCGATTTCGATCCGCTTACAGGGCTTGTCCGTGTTTTCGGAAAAGGGGCCAAAGAGCG
CACGGTGCCGGTCCATGCAACCGCGGCCCGTTTTCTTGGCGCATACCTGCGCGACTGGCGCCCGGCTTTCAAACCCGTGG
AAAATATTCTTTTCCTCAACCGCTCCGGCAAGGGGCTGACCAGACAGGCAGTCTGGAAGATTGTCAGGCGGCATGTGGCA
GATGCAGGCATACACAGGCAGATATCACCGCACACTTTCCGGCACTCATTTGCCACCCATCTGCTGGAAGGCGGCGCCGA
TCTGCGTACGGTCCAGCTGCTGCTGGGCCATGCCGATATCGCCGCCACCGAAATTTACACCCACGTAGAAACAGAACGCC
TGCGCAGGATACACAAACAGTTCCATCCGCGCTCCAAAATCAAAATCTAG

Upstream 100 bases:

>100_bases
TGTCGTAACCGGAGTCAATTTTTAGCTCTTGTTCCGAATTACAGCCCTGTGTAGTATCCTGAAAACATACCCTGATCAAT
AGACCCAGATATAGAATACC

Downstream 100 bases:

>100_bases
CGACGGTCAGAAACGTATGACGACTTCACCCCCTCTTATAGCCGCCCCCGTGGTTGTGACCGCCCATGCCAATGCCGATT
TTGACGCGCTGGCTTCCATT

Product: tyrosine recombinase XerD subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 309; Mature: 309

Protein sequence:

>309_residues
MLKNSQKNEAAAPPHPIVDSFLQHLLISRGLSENTLSSYGTDLQSFLDFLHHKKSRLEDVTDQSLLLYIMHLRRRGLSSK
SLARQLAALRGLFRYGTEQNLLSENPCRFLENPKIPKSLPEYLSQQEIAEVLAQPDLKEKLGFRDRTMLELLYAAGLRVS
ELITLKPLDFDPLTGLVRVFGKGAKERTVPVHATAARFLGAYLRDWRPAFKPVENILFLNRSGKGLTRQAVWKIVRRHVA
DAGIHRQISPHTFRHSFATHLLEGGADLRTVQLLLGHADIAATEIYTHVETERLRRIHKQFHPRSKIKI

Sequences:

>Translated_309_residues
MLKNSQKNEAAAPPHPIVDSFLQHLLISRGLSENTLSSYGTDLQSFLDFLHHKKSRLEDVTDQSLLLYIMHLRRRGLSSK
SLARQLAALRGLFRYGTEQNLLSENPCRFLENPKIPKSLPEYLSQQEIAEVLAQPDLKEKLGFRDRTMLELLYAAGLRVS
ELITLKPLDFDPLTGLVRVFGKGAKERTVPVHATAARFLGAYLRDWRPAFKPVENILFLNRSGKGLTRQAVWKIVRRHVA
DAGIHRQISPHTFRHSFATHLLEGGADLRTVQLLLGHADIAATEIYTHVETERLRRIHKQFHPRSKIKI
>Mature_309_residues
MLKNSQKNEAAAPPHPIVDSFLQHLLISRGLSENTLSSYGTDLQSFLDFLHHKKSRLEDVTDQSLLLYIMHLRRRGLSSK
SLARQLAALRGLFRYGTEQNLLSENPCRFLENPKIPKSLPEYLSQQEIAEVLAQPDLKEKLGFRDRTMLELLYAAGLRVS
ELITLKPLDFDPLTGLVRVFGKGAKERTVPVHATAARFLGAYLRDWRPAFKPVENILFLNRSGKGLTRQAVWKIVRRHVA
DAGIHRQISPHTFRHSFATHLLEGGADLRTVQLLLGHADIAATEIYTHVETERLRRIHKQFHPRSKIKI

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: COG4974

COG function: function code L; Site-specific recombinase XerD

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1789261, Length=291, Percent_Identity=41.5807560137457, Blast_Score=225, Evalue=3e-60,
Organism=Escherichia coli, GI1790244, Length=293, Percent_Identity=36.8600682593857, Blast_Score=190, Evalue=1e-49,
Organism=Escherichia coli, GI1790768, Length=183, Percent_Identity=30.0546448087432, Blast_Score=72, Evalue=5e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107
- InterPro:   IPR011932 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 35235; Mature: 35235

Theoretical pI: Translated: 10.63; Mature: 10.63

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKNSQKNEAAAPPHPIVDSFLQHLLISRGLSENTLSSYGTDLQSFLDFLHHKKSRLEDV
CCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHH
TDQSLLLYIMHLRRRGLSSKSLARQLAALRGLFRYGTEQNLLSENPCRFLENPKIPKSLP
HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHCCCCCHHHHCCCCCCHHHH
EYLSQQEIAEVLAQPDLKEKLGFRDRTMLELLYAAGLRVSELITLKPLDFDPLTGLVRVF
HHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHCCCCHHHHHEECCCCCCHHHHHHHHH
GKGAKERTVPVHATAARFLGAYLRDWRPAFKPVENILFLNRSGKGLTRQAVWKIVRRHVA
CCCCCCCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHEECCCCCCCHHHHHHHHHHHHHH
DAGIHRQISPHTFRHSFATHLLEGGADLRTVQLLLGHADIAATEIYTHVETERLRRIHKQ
HHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FHPRSKIKI
HCCCCCCCC
>Mature Secondary Structure
MLKNSQKNEAAAPPHPIVDSFLQHLLISRGLSENTLSSYGTDLQSFLDFLHHKKSRLEDV
CCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHH
TDQSLLLYIMHLRRRGLSSKSLARQLAALRGLFRYGTEQNLLSENPCRFLENPKIPKSLP
HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHCCCCCHHHHCCCCCCHHHH
EYLSQQEIAEVLAQPDLKEKLGFRDRTMLELLYAAGLRVSELITLKPLDFDPLTGLVRVF
HHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHCCCCHHHHHEECCCCCCHHHHHHHHH
GKGAKERTVPVHATAARFLGAYLRDWRPAFKPVENILFLNRSGKGLTRQAVWKIVRRHVA
CCCCCCCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHEECCCCCCCHHHHHHHHHHHHHH
DAGIHRQISPHTFRHSFATHLLEGGADLRTVQLLLGHADIAATEIYTHVETERLRRIHKQ
HHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FHPRSKIKI
HCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA