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The map label for this gene is ykgF [H]

Identifier: 78356886

GI number: 78356886

Start: 1893557

End: 1894999

Strand: Direct

Name: ykgF [H]

Synonym: Dde_1843

Alternate gene names: 78356886

Gene position: 1893557-1894999 (Clockwise)

Preceding gene: 78356885

Following gene: 78356887

Centisome position: 50.76

GC content: 53.5

Gene sequence:

>1443_bases
ATGGCTAGCAAAAAAAAGTTTGATTTTGCCGCGCATATTCAGGAAGCGCTCAACGATAGTCAGCTCAGAAGCAACTTTAA
GTTTGCCATGGGCACCATGATACAGAAACGCAAGGCCGTGTTTGCGGATCCGGAAGAAACCGCCGCACTGCGCAGGACAG
GCAATGCAATCAAACGGCGCTGTCTTTCACGGCTGCCTGCGCTGCTGGAAAAGCTGGAAAAAAAGTGTACTGAAAACGGC
ATAGTGGTGCATTGGGCCGAAACAACCGCGGAAGCCAATAATATTGTGCTGGACATCATGAAACGGCATGACGCGACCCG
CCTTGTCAAAGGCAAGTCCATGGTTTCCGAAGAGATGCACCTCAATAGCTTTCTGGAAGAAAGAAACATCGAAGCGCTGG
AAACAGATCTGGGTGAATTCATCATCCAGCTCAACAATGAGCCGCCTTCGCACATCATTGTGCCCGCCATCCACAAAAAC
AGAAAACAGGTTGCCCAGATTTTCCACGAAAAGCTGAAAGACACGCCCTATGTCGAAGAAGTGGAAAAGCTGAATGCCAT
TGCCCGCAAGACGCTGCGGGAAAAGTTCCGGATGGGACAGGTGGGACTTTCCGGTGTCAACTTTGCCGTAGCGGAAACCG
GCACACTGGTGCTGGTTGAAAACGAAGGCAACGGCCGCATGTGCACAACGGTGCCGCCTGTGCATATCGCCCTCATGGGG
CTGGAAAAGGTGGTGGAAAAACTTGATGACGTGCCGCCGCTGCTGCGCCTGCTGACCGGCTCTGCAACAGGGCAGATAAT
CACCACGTATGTCAATATGATCACCTCGCCGCGCAAAAAAGGAGAAAAAGACGGTCCCACGGAAGTCCATCTTGTCATTC
TGGATAACGGGCGTTCAAAAATGCTTGCAGACAGACAACTGAGACAGACGCTGCAATGCATTCGCTGCGGCACATGCCTG
AACCACTGCCCCGTGTACACCCGCATCGGCGGACACGCGTACGGTTCTGTTTATCCCGGCCCCATAGGTAAAATTCTGAC
TCCGCAAATTGACGGGCTGGACCTGAAAGGCAGTCTGGCAACAGCCTCTAGCCTGTGCAATGCATGTCAGGAAGTCTGCC
CCGTCATGATACCCATTCCCGCTATCATCCGGCGCATGCGCGACGAAAGTTACGGGAATTGTGCCGACAGCCACGCCGAA
ACAATAATCAAGGGACATGGATTCAAGAAAAACATCATTGAGTCCATTGTCTGGAAAGGATGGGCCGCCGTCTACCGGTT
GCCGTACCTCAATCGTCTGACAACCCGCATGCTGGGGCGCTTCGGCCACAGGCTGCCCAAAGTCGGCCCCCTGAAGGCGT
GGACAAGCGTACGCACCACCCCGAAATTCGCACCCAAAAGTCTGCATGACCTTGCAAAAGAGGAGGGCATACGCGATGAG
TAG

Upstream 100 bases:

>100_bases
GGCGACTGCGGCTGTATGATGAACATTGCCGGTGCCATGGAAAAACAGGGGATCGGCGTCAGAGCACAGCACCTTGCAGA
ATTCATATGGGAGCGTATCC

Downstream 100 bases:

>100_bases
TCAGGCTCGTGAGCACATTCTGGAACGGCTGTACAAATCTGCCGGCAGCGTTGCGGCGCCCGCTCCGTCAACAGACTGGG
AGCCGCCTGTATTCACTGAA

Product: Iron-sulfur cluster binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 480; Mature: 479

Protein sequence:

>480_residues
MASKKKFDFAAHIQEALNDSQLRSNFKFAMGTMIQKRKAVFADPEETAALRRTGNAIKRRCLSRLPALLEKLEKKCTENG
IVVHWAETTAEANNIVLDIMKRHDATRLVKGKSMVSEEMHLNSFLEERNIEALETDLGEFIIQLNNEPPSHIIVPAIHKN
RKQVAQIFHEKLKDTPYVEEVEKLNAIARKTLREKFRMGQVGLSGVNFAVAETGTLVLVENEGNGRMCTTVPPVHIALMG
LEKVVEKLDDVPPLLRLLTGSATGQIITTYVNMITSPRKKGEKDGPTEVHLVILDNGRSKMLADRQLRQTLQCIRCGTCL
NHCPVYTRIGGHAYGSVYPGPIGKILTPQIDGLDLKGSLATASSLCNACQEVCPVMIPIPAIIRRMRDESYGNCADSHAE
TIIKGHGFKKNIIESIVWKGWAAVYRLPYLNRLTTRMLGRFGHRLPKVGPLKAWTSVRTTPKFAPKSLHDLAKEEGIRDE

Sequences:

>Translated_480_residues
MASKKKFDFAAHIQEALNDSQLRSNFKFAMGTMIQKRKAVFADPEETAALRRTGNAIKRRCLSRLPALLEKLEKKCTENG
IVVHWAETTAEANNIVLDIMKRHDATRLVKGKSMVSEEMHLNSFLEERNIEALETDLGEFIIQLNNEPPSHIIVPAIHKN
RKQVAQIFHEKLKDTPYVEEVEKLNAIARKTLREKFRMGQVGLSGVNFAVAETGTLVLVENEGNGRMCTTVPPVHIALMG
LEKVVEKLDDVPPLLRLLTGSATGQIITTYVNMITSPRKKGEKDGPTEVHLVILDNGRSKMLADRQLRQTLQCIRCGTCL
NHCPVYTRIGGHAYGSVYPGPIGKILTPQIDGLDLKGSLATASSLCNACQEVCPVMIPIPAIIRRMRDESYGNCADSHAE
TIIKGHGFKKNIIESIVWKGWAAVYRLPYLNRLTTRMLGRFGHRLPKVGPLKAWTSVRTTPKFAPKSLHDLAKEEGIRDE
>Mature_479_residues
ASKKKFDFAAHIQEALNDSQLRSNFKFAMGTMIQKRKAVFADPEETAALRRTGNAIKRRCLSRLPALLEKLEKKCTENGI
VVHWAETTAEANNIVLDIMKRHDATRLVKGKSMVSEEMHLNSFLEERNIEALETDLGEFIIQLNNEPPSHIIVPAIHKNR
KQVAQIFHEKLKDTPYVEEVEKLNAIARKTLREKFRMGQVGLSGVNFAVAETGTLVLVENEGNGRMCTTVPPVHIALMGL
EKVVEKLDDVPPLLRLLTGSATGQIITTYVNMITSPRKKGEKDGPTEVHLVILDNGRSKMLADRQLRQTLQCIRCGTCLN
HCPVYTRIGGHAYGSVYPGPIGKILTPQIDGLDLKGSLATASSLCNACQEVCPVMIPIPAIIRRMRDESYGNCADSHAET
IIKGHGFKKNIIESIVWKGWAAVYRLPYLNRLTTRMLGRFGHRLPKVGPLKAWTSVRTTPKFAPKSLHDLAKEEGIRDE

Specific function: Unknown

COG id: COG1139

COG function: function code C; Uncharacterized conserved protein containing a ferredoxin-like domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 4Fe-4S ferredoxin-type domains [H]

Homologues:

Organism=Escherichia coli, GI1786498, Length=381, Percent_Identity=43.5695538057743, Blast_Score=338, Evalue=4e-94,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR003741
- InterPro:   IPR004452
- InterPro:   IPR002698
- InterPro:   IPR012285
- InterPro:   IPR009051 [H]

Pfam domain/function: PF02589 DUF162 [H]

EC number: NA

Molecular weight: Translated: 53563; Mature: 53432

Theoretical pI: Translated: 9.67; Mature: 9.67

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MASKKKFDFAAHIQEALNDSQLRSNFKFAMGTMIQKRKAVFADPEETAALRRTGNAIKRR
CCCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
CLSRLPALLEKLEKKCTENGIVVHWAETTAEANNIVLDIMKRHDATRLVKGKSMVSEEMH
HHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHH
LNSFLEERNIEALETDLGEFIIQLNNEPPSHIIVPAIHKNRKQVAQIFHEKLKDTPYVEE
HHHHHHHCCHHHHHHHHHHHHEEECCCCCCCEEEECHHCCHHHHHHHHHHHHCCCCHHHH
VEKLNAIARKTLREKFRMGQVGLSGVNFAVAETGTLVLVENEGNGRMCTTVPPVHIALMG
HHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCEEEEEEECCCCEEEECCCCHHHHHHH
LEKVVEKLDDVPPLLRLLTGSATGQIITTYVNMITSPRKKGEKDGPTEVHLVILDNGRSK
HHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHHCCHHCCCCCCCCEEEEEEEECCCHH
MLADRQLRQTLQCIRCGTCLNHCPVYTRIGGHAYGSVYPGPIGKILTPQIDGLDLKGSLA
HHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH
TASSLCNACQEVCPVMIPIPAIIRRMRDESYGNCADSHAETIIKGHGFKKNIIESIVWKG
HHHHHHHHHHHHCCEECCHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHH
WAAVYRLPYLNRLTTRMLGRFGHRLPKVGPLKAWTSVRTTPKFAPKSLHDLAKEEGIRDE
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
ASKKKFDFAAHIQEALNDSQLRSNFKFAMGTMIQKRKAVFADPEETAALRRTGNAIKRR
CCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
CLSRLPALLEKLEKKCTENGIVVHWAETTAEANNIVLDIMKRHDATRLVKGKSMVSEEMH
HHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHH
LNSFLEERNIEALETDLGEFIIQLNNEPPSHIIVPAIHKNRKQVAQIFHEKLKDTPYVEE
HHHHHHHCCHHHHHHHHHHHHEEECCCCCCCEEEECHHCCHHHHHHHHHHHHCCCCHHHH
VEKLNAIARKTLREKFRMGQVGLSGVNFAVAETGTLVLVENEGNGRMCTTVPPVHIALMG
HHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCEEEEEEECCCCEEEECCCCHHHHHHH
LEKVVEKLDDVPPLLRLLTGSATGQIITTYVNMITSPRKKGEKDGPTEVHLVILDNGRSK
HHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHHCCHHCCCCCCCCEEEEEEEECCCHH
MLADRQLRQTLQCIRCGTCLNHCPVYTRIGGHAYGSVYPGPIGKILTPQIDGLDLKGSLA
HHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH
TASSLCNACQEVCPVMIPIPAIIRRMRDESYGNCADSHAETIIKGHGFKKNIIESIVWKG
HHHHHHHHHHHHCCEECCHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHH
WAAVYRLPYLNRLTTRMLGRFGHRLPKVGPLKAWTSVRTTPKFAPKSLHDLAKEEGIRDE
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]