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The map label for this gene is ihfB [H]

Identifier: 78356842

GI number: 78356842

Start: 1849273

End: 1849548

Strand: Reverse

Name: ihfB [H]

Synonym: Dde_1799

Alternate gene names: 78356842

Gene position: 1849548-1849273 (Counterclockwise)

Preceding gene: 78356843

Following gene: 78356841

Centisome position: 49.58

GC content: 47.1

Gene sequence:

>276_bases
ATGAACAAGAGCGAATTGATCAAAGTCCTTTCTGAAGAAAACAACATCTCCATCGAAGAGGCCACCCTTGTGGTGACCAC
CTTTGTGGATTCGATGAAAGACGCCCTTGCCGAAGGTGACCGTGTTGAAATACGGGGCTTCGGAAGCTTCAAGGTAAAAC
AGTACGAAGGGTATTCCGGACGAAACCCTAAAACGGGCGAAATCGTCAATGTTCAGCCTAAACAGCTGCCCTTTTTCCGG
GCGGGTAAAGAGCTGAAAGAATTTCTAAACGATTAG

Upstream 100 bases:

>100_bases
AAGAATATTAAGGCTTGAACTCGTAGGCTTTTTGCATAATATTCACGTTGTACACACTCTGTTATTTTGTAACTCACCTC
TTTTTCGGGAGGCTCCATAG

Downstream 100 bases:

>100_bases
CAAACGTTCTGAATCCGAAGTTCGCCCGAACCGGCAATGCCGTTTCGGGCGTCTTTTTTTCTGCCGGTTCCTTTCGGGGC
AGGCAGTTGACTGGATACGG

Product: histone-like DNA-binding protein

Products: NA

Alternate protein names: IHF-beta [H]

Number of amino acids: Translated: 91; Mature: 91

Protein sequence:

>91_residues
MNKSELIKVLSEENNISIEEATLVVTTFVDSMKDALAEGDRVEIRGFGSFKVKQYEGYSGRNPKTGEIVNVQPKQLPFFR
AGKELKEFLND

Sequences:

>Translated_91_residues
MNKSELIKVLSEENNISIEEATLVVTTFVDSMKDALAEGDRVEIRGFGSFKVKQYEGYSGRNPKTGEIVNVQPKQLPFFR
AGKELKEFLND
>Mature_91_residues
MNKSELIKVLSEENNISIEEATLVVTTFVDSMKDALAEGDRVEIRGFGSFKVKQYEGYSGRNPKTGEIVNVQPKQLPFFR
AGKELKEFLND

Specific function: This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control [H]

COG id: COG0776

COG function: function code L; Bacterial nucleoid DNA-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial histone-like protein family [H]

Homologues:

Organism=Escherichia coli, GI1786644, Length=90, Percent_Identity=40, Blast_Score=77, Evalue=3e-16,
Organism=Escherichia coli, GI1787141, Length=91, Percent_Identity=40.6593406593407, Blast_Score=75, Evalue=7e-16,
Organism=Escherichia coli, GI1790433, Length=87, Percent_Identity=36.7816091954023, Blast_Score=70, Evalue=3e-14,

Paralogues:

None

Copy number: 860 Molecules/Cell In: Growth-Phase, Minimal Media (Based on E. coli). 2040 Molecules/Cell In: Stationary-Phase, Rich-Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000119
- InterPro:   IPR020816
- InterPro:   IPR010992
- InterPro:   IPR005685 [H]

Pfam domain/function: PF00216 Bac_DNA_binding [H]

EC number: NA

Molecular weight: Translated: 10271; Mature: 10271

Theoretical pI: Translated: 4.88; Mature: 4.88

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKSELIKVLSEENNISIEEATLVVTTFVDSMKDALAEGDRVEIRGFGSFKVKQYEGYSG
CCHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCEEEEEECCCCC
RNPKTGEIVNVQPKQLPFFRAGKELKEFLND
CCCCCCCEEECCCCCCCHHHCCHHHHHHHCC
>Mature Secondary Structure
MNKSELIKVLSEENNISIEEATLVVTTFVDSMKDALAEGDRVEIRGFGSFKVKQYEGYSG
CCHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCEEEEEECCCCC
RNPKTGEIVNVQPKQLPFFRAGKELKEFLND
CCCCCCCEEECCCCCCCHHHCCHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA