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The map label for this gene is ybeY [C]

Identifier: 78356694

GI number: 78356694

Start: 1703232

End: 1703741

Strand: Reverse

Name: ybeY [C]

Synonym: Dde_1651

Alternate gene names: 78356694

Gene position: 1703741-1703232 (Counterclockwise)

Preceding gene: 78356695

Following gene: 78356692

Centisome position: 45.67

GC content: 59.22

Gene sequence:

>510_bases
ATGATTGTCATAACAACACGCACCGGTGCCATGACCGGTTTTCCTCTTTCCCGTCACGACATCAGAATAGCACTGCATAG
CATGCTTAGCTGTCTTGGACTTTCCGGTGCGCATGTGGAGGTCATTCTGACCGATGACGGGGAAAGCGCACAGCTGAACC
GCGAGTTTCTGGGCTGCTACGGCCCGACGAACATACTTTCGTTTCCCGCCGCTGGCCCTGTCGCAGCCCCCCGTCAAGAA
CCGGACAGCCCCCCTGCATGCCGGAAAGACAGCAGCCACGCCGAGGACGACACAGACCTCGGGGTTCTGGCTCTTTCCAC
CGGTGCCGTGCACAGGGAAAGCTTTCTTTACGGACAACCACCGCACCGGCACGCCCTGCGCCTGCTTGCTCACGGACTGC
TGCACCTTGCAGGTTACGACCATGGCCCGCAGATGGACGACATGACAGAAACACTGATGCAATGCGCAACCGGCAAGGCA
GCAGCGGATACGGTCGTTACCGGATTCTGA

Upstream 100 bases:

>100_bases
AACAGGCCGTGTCGCAACAGCCTGAAAAAAGAACCACGCTCATCGCTGTTTCCGACAGACCTGCCCGTCCCCAGACATCT
GCGCGCAGCGGAGAACAGCC

Downstream 100 bases:

>100_bases
TTCCGAGCCGTCCGCCACTTGTCTGCCGTGCAAACTTTGCAGCCGCTGCGGGCGTCAACGGCAACTGTCCCTGATCCTGC
CACCTTCCGCGCTTTAACTG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 169; Mature: 169

Protein sequence:

>169_residues
MIVITTRTGAMTGFPLSRHDIRIALHSMLSCLGLSGAHVEVILTDDGESAQLNREFLGCYGPTNILSFPAAGPVAAPRQE
PDSPPACRKDSSHAEDDTDLGVLALSTGAVHRESFLYGQPPHRHALRLLAHGLLHLAGYDHGPQMDDMTETLMQCATGKA
AADTVVTGF

Sequences:

>Translated_169_residues
MIVITTRTGAMTGFPLSRHDIRIALHSMLSCLGLSGAHVEVILTDDGESAQLNREFLGCYGPTNILSFPAAGPVAAPRQE
PDSPPACRKDSSHAEDDTDLGVLALSTGAVHRESFLYGQPPHRHALRLLAHGLLHLAGYDHGPQMDDMTETLMQCATGKA
AADTVVTGF
>Mature_169_residues
MIVITTRTGAMTGFPLSRHDIRIALHSMLSCLGLSGAHVEVILTDDGESAQLNREFLGCYGPTNILSFPAAGPVAAPRQE
PDSPPACRKDSSHAEDDTDLGVLALSTGAVHRESFLYGQPPHRHALRLLAHGLLHLAGYDHGPQMDDMTETLMQCATGKA
AADTVVTGF

Specific function: Involved in rRNA and/or ribosome maturation and assembly. Required for normal 5' and 3' processing of 16S, 23S and 5S rRNAs. May have metal-dependent hydrolase activity

COG id: COG0319

COG function: function code R; Predicted metal-dependent hydrolase

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rRNA maturation factor YbeY family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RRMF_DESDG (Q311E8)

Other databases:

- EMBL:   CP000112
- RefSeq:   YP_388143.1
- ProteinModelPortal:   Q311E8
- SMR:   Q311E8
- STRING:   Q311E8
- GeneID:   3756648
- GenomeReviews:   CP000112_GR
- KEGG:   dde:Dde_1651
- NMPDR:   fig|207559.3.peg.1444
- eggNOG:   NOG73420
- HOGENOM:   HBG457714
- OMA:   DIRIALH
- BioCyc:   DDES207559:DDE_1651-MONOMER
- HAMAP:   MF_00009
- InterPro:   IPR023091
- InterPro:   IPR020549
- InterPro:   IPR002036
- Gene3D:   G3DSA:3.40.390.30
- TIGRFAMs:   TIGR00043

Pfam domain/function: PF02130 UPF0054

EC number: NA

Molecular weight: Translated: 17970; Mature: 17970

Theoretical pI: Translated: 5.95; Mature: 5.95

Prosite motif: PS01306 UPF0054

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
5.9 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
5.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIVITTRTGAMTGFPLSRHDIRIALHSMLSCLGLSGAHVEVILTDDGESAQLNREFLGCY
CEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHCCC
GPTNILSFPAAGPVAAPRQEPDSPPACRKDSSHAEDDTDLGVLALSTGAVHRESFLYGQP
CCCHHEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHCCCCCC
PHRHALRLLAHGLLHLAGYDHGPQMDDMTETLMQCATGKAAADTVVTGF
CHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCEEECCC
>Mature Secondary Structure
MIVITTRTGAMTGFPLSRHDIRIALHSMLSCLGLSGAHVEVILTDDGESAQLNREFLGCY
CEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHCCC
GPTNILSFPAAGPVAAPRQEPDSPPACRKDSSHAEDDTDLGVLALSTGAVHRESFLYGQP
CCCHHEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHCCCCCC
PHRHALRLLAHGLLHLAGYDHGPQMDDMTETLMQCATGKAAADTVVTGF
CHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA