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The map label for this gene is sufC [C]

Identifier: 78356490

GI number: 78356490

Start: 1469529

End: 1470311

Strand: Reverse

Name: sufC [C]

Synonym: Dde_1445

Alternate gene names: 78356490

Gene position: 1470311-1469529 (Counterclockwise)

Preceding gene: 78356491

Following gene: 78356489

Centisome position: 39.42

GC content: 56.07

Gene sequence:

>783_bases
ATGCTTGAAATAAAAAATCTTCGTGTGAAGATCGGCGATGTTGAAGTGCTTAAAGGCATCAACCTGCACATCAACGACGG
CGAAACCTTCATTCTGTTCGGTCCCAACGGCTCCGGCAAAACCACGCTGCTGATGACGCTGATGGGCTTCGGCAATTATA
CCGTCACCGGCGGGCAGATACTTTTCAAAGGGCATGACATCACGCATATGCCCATGTACGAACGCGCCCGCCTCGGCATC
GGCATGTCGTTCCAGCGTCCTCCCACCATCCACGGGCTGAAAACCCGCCACATGGTCCGCATGTGCGGACAGGGACGTGA
AGTGGATGTGGACGGGCTGGCCCGCAAGGTCAATTTTGAGAATTTTCTTGAGCGCGACATCAACGCCGGTTTTTCCGGCG
GCGAGATCAAACGGTCCGAGCTGCTCCAGCTTATGGCCCAGCAGCCCGACCTTGTTCTTTTTGACGAACCGGAATCCGGT
GTCGACCTTGAGAACATGGCTCTGATAGGCAAAACAGCCCGTCAGCTGCTTGACGGTGTGCCCCCCGCAAGCTGCAGCAT
GAAAGAACACCGCGCCCGCTGTAAAACCGCCGGACTCATCATCACGCATACCGGCTATATTCTGGAATATGTCAACGCCG
ACCGCGGACAGGTCATGTACAACGGCCAGCTGTGCTGCGAAGCCCGCCCCCGTGACATTCTGGACCATATTTCCAAGCAC
GGCTACGAAGAATGCCTGCGCTGTCTCACCCCTACAGAGGGCACAATCAGGGAGACCATGTAA

Upstream 100 bases:

>100_bases
TCTCCGCAGCACGCACATGATCTCCGCACGGGATCATGTGCCTACGGCTTTGCCGGAAACTGTTTCTGCGCCGCGGTAAA
TTCGCAAGTGGGGTTCACAC

Downstream 100 bases:

>100_bases
ATCATGAGCAAGATAGATCTTTCGCGCTACGCCTTTGACGGCGGCACCGCCGATTCCATTGCCGACCTGACCACCCTTTC
CAACGAAGACAAACAGCGCC

Product: ATPase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 260; Mature: 260

Protein sequence:

>260_residues
MLEIKNLRVKIGDVEVLKGINLHINDGETFILFGPNGSGKTTLLMTLMGFGNYTVTGGQILFKGHDITHMPMYERARLGI
GMSFQRPPTIHGLKTRHMVRMCGQGREVDVDGLARKVNFENFLERDINAGFSGGEIKRSELLQLMAQQPDLVLFDEPESG
VDLENMALIGKTARQLLDGVPPASCSMKEHRARCKTAGLIITHTGYILEYVNADRGQVMYNGQLCCEARPRDILDHISKH
GYEECLRCLTPTEGTIRETM

Sequences:

>Translated_260_residues
MLEIKNLRVKIGDVEVLKGINLHINDGETFILFGPNGSGKTTLLMTLMGFGNYTVTGGQILFKGHDITHMPMYERARLGI
GMSFQRPPTIHGLKTRHMVRMCGQGREVDVDGLARKVNFENFLERDINAGFSGGEIKRSELLQLMAQQPDLVLFDEPESG
VDLENMALIGKTARQLLDGVPPASCSMKEHRARCKTAGLIITHTGYILEYVNADRGQVMYNGQLCCEARPRDILDHISKH
GYEECLRCLTPTEGTIRETM
>Mature_260_residues
MLEIKNLRVKIGDVEVLKGINLHINDGETFILFGPNGSGKTTLLMTLMGFGNYTVTGGQILFKGHDITHMPMYERARLGI
GMSFQRPPTIHGLKTRHMVRMCGQGREVDVDGLARKVNFENFLERDINAGFSGGEIKRSELLQLMAQQPDLVLFDEPESG
VDLENMALIGKTARQLLDGVPPASCSMKEHRARCKTAGLIITHTGYILEYVNADRGQVMYNGQLCCEARPRDILDHISKH
GYEECLRCLTPTEGTIRETM

Specific function: Unknown

COG id: COG0396

COG function: function code O; ABC-type transport system involved in Fe-S cluster assembly, ATPase component

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI42741659, Length=204, Percent_Identity=25.4901960784314, Blast_Score=66, Evalue=3e-11,
Organism=Escherichia coli, GI1787972, Length=240, Percent_Identity=34.5833333333333, Blast_Score=137, Evalue=5e-34,
Organism=Escherichia coli, GI1788761, Length=272, Percent_Identity=26.8382352941176, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1789593, Length=210, Percent_Identity=30, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI87081709, Length=240, Percent_Identity=27.5, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI87081791, Length=265, Percent_Identity=25.6603773584906, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI1790467, Length=168, Percent_Identity=30.3571428571429, Blast_Score=71, Evalue=7e-14,
Organism=Escherichia coli, GI1787029, Length=173, Percent_Identity=31.2138728323699, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI1787712, Length=236, Percent_Identity=25.8474576271186, Blast_Score=68, Evalue=6e-13,
Organism=Escherichia coli, GI1787759, Length=286, Percent_Identity=27.2727272727273, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1787370, Length=226, Percent_Identity=26.5486725663717, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI87082268, Length=231, Percent_Identity=29.4372294372294, Blast_Score=65, Evalue=6e-12,
Organism=Escherichia coli, GI87082267, Length=202, Percent_Identity=30.1980198019802, Blast_Score=64, Evalue=8e-12,
Organism=Escherichia coli, GI1786698, Length=172, Percent_Identity=28.4883720930233, Blast_Score=62, Evalue=5e-11,
Organism=Caenorhabditis elegans, GI71996809, Length=215, Percent_Identity=26.046511627907, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI193211017, Length=215, Percent_Identity=26.046511627907, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI193211015, Length=215, Percent_Identity=26.046511627907, Blast_Score=66, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17541710, Length=233, Percent_Identity=26.1802575107296, Blast_Score=65, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI17569145, Length=165, Percent_Identity=30.3030303030303, Blast_Score=65, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI17565586, Length=206, Percent_Identity=26.6990291262136, Blast_Score=65, Evalue=5e-11,
Organism=Drosophila melanogaster, GI24659289, Length=167, Percent_Identity=28.1437125748503, Blast_Score=68, Evalue=5e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593
- InterPro:   IPR010230 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 29008; Mature: 29008

Theoretical pI: Translated: 6.99; Mature: 6.99

Prosite motif: PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.7 %Cys     (Translated Protein)
5.0 %Met     (Translated Protein)
7.7 %Cys+Met (Translated Protein)
2.7 %Cys     (Mature Protein)
5.0 %Met     (Mature Protein)
7.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLEIKNLRVKIGDVEVLKGINLHINDGETFILFGPNGSGKTTLLMTLMGFGNYTVTGGQI
CCCCCCEEEEECCEEEECCCEEEECCCCEEEEECCCCCCCCEEEEEECCCCCEEEECCEE
LFKGHDITHMPMYERARLGIGMSFQRPPTIHGLKTRHMVRMCGQGREVDVDGLARKVNFE
EEECCCEEECCCHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEECHHHHHHHCCHH
NFLERDINAGFSGGEIKRSELLQLMAQQPDLVLFDEPESGVDLENMALIGKTARQLLDGV
HHHHHHHCCCCCCCCCCHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCC
PPASCSMKEHRARCKTAGLIITHTGYILEYVNADRGQVMYNGQLCCEARPRDILDHISKH
CCCCCCHHHHHHHHHHCCEEEEECCEEEEEECCCCCEEEECCEEEECCCCHHHHHHHHHC
GYEECLRCLTPTEGTIRETM
CHHHHHHHCCCCCCCHHCCC
>Mature Secondary Structure
MLEIKNLRVKIGDVEVLKGINLHINDGETFILFGPNGSGKTTLLMTLMGFGNYTVTGGQI
CCCCCCEEEEECCEEEECCCEEEECCCCEEEEECCCCCCCCEEEEEECCCCCEEEECCEE
LFKGHDITHMPMYERARLGIGMSFQRPPTIHGLKTRHMVRMCGQGREVDVDGLARKVNFE
EEECCCEEECCCHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEECHHHHHHHCCHH
NFLERDINAGFSGGEIKRSELLQLMAQQPDLVLFDEPESGVDLENMALIGKTARQLLDGV
HHHHHHHCCCCCCCCCCHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCC
PPASCSMKEHRARCKTAGLIITHTGYILEYVNADRGQVMYNGQLCCEARPRDILDHISKH
CCCCCCHHHHHHHHHHCCEEEEECCEEEEEECCCCCEEEECCEEEECCCCHHHHHHHHHC
GYEECLRCLTPTEGTIRETM
CHHHHHHHCCCCCCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12122206; 12799345 [H]