Click here to switch to the map view.

The map label for this gene is sufB [C]

Identifier: 78356489

GI number: 78356489

Start: 1468365

End: 1469525

Strand: Reverse

Name: sufB [C]

Synonym: Dde_1444

Alternate gene names: 78356489

Gene position: 1469525-1468365 (Counterclockwise)

Preceding gene: 78356490

Following gene: 78356488

Centisome position: 39.4

GC content: 57.36

Gene sequence:

>1161_bases
ATGAGCAAGATAGATCTTTCGCGCTACGCCTTTGACGGCGGCACCGCCGATTCCATTGCCGACCTGACCACCCTTTCCAA
CGAAGACAAACAGCGCCTTCTGTACGCCGGTATCGACGTGAACCAGAACAAGCTGGGCGGCAGCTTCATGCACATGAACC
ACTCGGGTGTTCACTGCCAGAGCCGGCAGGAAGGCCTTGAAATCATGGATATCAAGGACGCGTACAACAAGTACGACGGG
CTGCCCGAATACTGGTGGAAAATGGTCGATCCCGACAAGGACGAATTTACCAGAGCTGCACACGAACACCTGCATGGCGG
CTACTTTATCCGTGCCCGCAAGGGCGTTAAGGTACAGGACCCCGTGCAGTCGTGCCTGTTTATCAAAGACAGCGGCCTTG
CCCAGAACGTGCATAACATAGTCGTTGTGGAAGAAGGCGCCGAACTGCATGTGCTTTCCGGCTGTGCCACCGCTCACGGA
GCCAAAGACACCGCCCATATGGGCATATCTGAATTTTATGTGAAAAAAGGCGGCAAGCTGACGTTCACCATGATTCATAA
CTGGGGCGACGATACCGCCGTCCGCCCGCGCTCCGGCGGCGTGATGGAAGAAGACTGCGTGTTTCTGTCCAACTACGTGC
TGCTCAAGCCCGTCAGAGACCTGCAGATGTACCCCAGCATCACGCTGAACGGTTCCGGTTCCGTGGCGCGGTTCAACTCC
GTCATGGTAACCCCTCCCGGCAGCTATGTGGACGCAGGCAACCGCATCATTCTTAACGCCCCCGACACACGCGCCGAAAT
CATCGCCCGTACGCTGACCACCGGCGGAACCGTCATCAACCGCGGATTCATCGGCGGCTACAATGTGCCTGCCAAAGGGC
ATCTGGAATGCAAAGGCCTTATTCTGGGTGGCGGACGCATCCATGCCATTCCCGAACTGGATGCCACCATCGACGGTGTG
GAGCTGTCTCACGAGGCGGCCGTGGGCAAAATTGCGCAGGAAGAAATTGAATACCTGATGGCCCGCGGGATGGACGAAGA
CGAAGCCACCTCCACCATTGTCCGCGGCTTTCTTAATGTGGACATCATGGGACTGCCGCACGAACTGGAAGACGCCATCC
GCCAGCAGATAGATCAGCTGGATGCCGGCGACGCCATGTAA

Upstream 100 bases:

>100_bases
CCCCCGTGACATTCTGGACCATATTTCCAAGCACGGCTACGAAGAATGCCTGCGCTGTCTCACCCCTACAGAGGGCACAA
TCAGGGAGACCATGTAAATC

Downstream 100 bases:

>100_bases
CCGCCCGCAGTTATCGCAGCACCGCTTGCAAGGCCCCGCGCATGTCGCGGGGCTTTCCTTATGCGGCGCCGGTTGCACGC
CTGCGGGTATTTATCTATTG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 386; Mature: 385

Protein sequence:

>386_residues
MSKIDLSRYAFDGGTADSIADLTTLSNEDKQRLLYAGIDVNQNKLGGSFMHMNHSGVHCQSRQEGLEIMDIKDAYNKYDG
LPEYWWKMVDPDKDEFTRAAHEHLHGGYFIRARKGVKVQDPVQSCLFIKDSGLAQNVHNIVVVEEGAELHVLSGCATAHG
AKDTAHMGISEFYVKKGGKLTFTMIHNWGDDTAVRPRSGGVMEEDCVFLSNYVLLKPVRDLQMYPSITLNGSGSVARFNS
VMVTPPGSYVDAGNRIILNAPDTRAEIIARTLTTGGTVINRGFIGGYNVPAKGHLECKGLILGGGRIHAIPELDATIDGV
ELSHEAAVGKIAQEEIEYLMARGMDEDEATSTIVRGFLNVDIMGLPHELEDAIRQQIDQLDAGDAM

Sequences:

>Translated_386_residues
MSKIDLSRYAFDGGTADSIADLTTLSNEDKQRLLYAGIDVNQNKLGGSFMHMNHSGVHCQSRQEGLEIMDIKDAYNKYDG
LPEYWWKMVDPDKDEFTRAAHEHLHGGYFIRARKGVKVQDPVQSCLFIKDSGLAQNVHNIVVVEEGAELHVLSGCATAHG
AKDTAHMGISEFYVKKGGKLTFTMIHNWGDDTAVRPRSGGVMEEDCVFLSNYVLLKPVRDLQMYPSITLNGSGSVARFNS
VMVTPPGSYVDAGNRIILNAPDTRAEIIARTLTTGGTVINRGFIGGYNVPAKGHLECKGLILGGGRIHAIPELDATIDGV
ELSHEAAVGKIAQEEIEYLMARGMDEDEATSTIVRGFLNVDIMGLPHELEDAIRQQIDQLDAGDAM
>Mature_385_residues
SKIDLSRYAFDGGTADSIADLTTLSNEDKQRLLYAGIDVNQNKLGGSFMHMNHSGVHCQSRQEGLEIMDIKDAYNKYDGL
PEYWWKMVDPDKDEFTRAAHEHLHGGYFIRARKGVKVQDPVQSCLFIKDSGLAQNVHNIVVVEEGAELHVLSGCATAHGA
KDTAHMGISEFYVKKGGKLTFTMIHNWGDDTAVRPRSGGVMEEDCVFLSNYVLLKPVRDLQMYPSITLNGSGSVARFNSV
MVTPPGSYVDAGNRIILNAPDTRAEIIARTLTTGGTVINRGFIGGYNVPAKGHLECKGLILGGGRIHAIPELDATIDGVE
LSHEAAVGKIAQEEIEYLMARGMDEDEATSTIVRGFLNVDIMGLPHELEDAIRQQIDQLDAGDAM

Specific function: Unknown

COG id: COG0719

COG function: function code O; ABC-type transport system involved in Fe-S cluster assembly, permease component

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0051 (ycf24) family [H]

Homologues:

Organism=Escherichia coli, GI87081955, Length=334, Percent_Identity=23.0538922155689, Blast_Score=92, Evalue=6e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000825 [H]

Pfam domain/function: PF01458 UPF0051 [H]

EC number: NA

Molecular weight: Translated: 42207; Mature: 42076

Theoretical pI: Translated: 5.14; Mature: 5.14

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKIDLSRYAFDGGTADSIADLTTLSNEDKQRLLYAGIDVNQNKLGGSFMHMNHSGVHCQ
CCCCCCHHEEECCCCCHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCEEEEECCCCCCCC
SRQEGLEIMDIKDAYNKYDGLPEYWWKMVDPDKDEFTRAAHEHLHGGYFIRARKGVKVQD
CHHCCCEEEEHHHHHHHHCCCHHHHHCCCCCCHHHHHHHHHHHCCCCEEEEECCCCEECC
PVQSCLFIKDSGLAQNVHNIVVVEEGAELHVLSGCATAHGAKDTAHMGISEFYVKKGGKL
CHHHEEEEECCCCCCCCCEEEEEECCCCEEEEECCCCCCCCCCHHHCCHHHHHHHCCCCE
TFTMIHNWGDDTAVRPRSGGVMEEDCVFLSNYVLLKPVRDLQMYPSITLNGSGSVARFNS
EEEEEEECCCCCCCCCCCCCCCCCCHHEECCEEEEEEHHHHHCCCCEEECCCCCEEEECE
VMVTPPGSYVDAGNRIILNAPDTRAEIIARTLTTGGTVINRGFIGGYNVPAKGHLECKGL
EEECCCCCCCCCCCEEEEECCCCHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCEEEEEE
ILGGGRIHAIPELDATIDGVELSHEAAVGKIAQEEIEYLMARGMDEDEATSTIVRGFLNV
EEECCEEEECCCCCCCCCCEEECHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCE
DIMGLPHELEDAIRQQIDQLDAGDAM
EEEECCHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
SKIDLSRYAFDGGTADSIADLTTLSNEDKQRLLYAGIDVNQNKLGGSFMHMNHSGVHCQ
CCCCCHHEEECCCCCHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCEEEEECCCCCCCC
SRQEGLEIMDIKDAYNKYDGLPEYWWKMVDPDKDEFTRAAHEHLHGGYFIRARKGVKVQD
CHHCCCEEEEHHHHHHHHCCCHHHHHCCCCCCHHHHHHHHHHHCCCCEEEEECCCCEECC
PVQSCLFIKDSGLAQNVHNIVVVEEGAELHVLSGCATAHGAKDTAHMGISEFYVKKGGKL
CHHHEEEEECCCCCCCCCEEEEEECCCCEEEEECCCCCCCCCCHHHCCHHHHHHHCCCCE
TFTMIHNWGDDTAVRPRSGGVMEEDCVFLSNYVLLKPVRDLQMYPSITLNGSGSVARFNS
EEEEEEECCCCCCCCCCCCCCCCCCHHEECCEEEEEEHHHHHCCCCEEECCCCCEEEECE
VMVTPPGSYVDAGNRIILNAPDTRAEIIARTLTTGGTVINRGFIGGYNVPAKGHLECKGL
EEECCCCCCCCCCCEEEEECCCCHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCEEEEEE
ILGGGRIHAIPELDATIDGVELSHEAAVGKIAQEEIEYLMARGMDEDEATSTIVRGFLNV
EEECCEEEECCCCCCCCCCEEECHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCE
DIMGLPHELEDAIRQQIDQLDAGDAM
EEEECCHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9389475 [H]