Click here to switch to the map view.

The map label for this gene is rpfG [H]

Identifier: 78356466

GI number: 78356466

Start: 1444426

End: 1446489

Strand: Direct

Name: rpfG [H]

Synonym: Dde_1421

Alternate gene names: 78356466

Gene position: 1444426-1446489 (Clockwise)

Preceding gene: 78356465

Following gene: 78356470

Centisome position: 38.72

GC content: 58.72

Gene sequence:

>2064_bases
ATGGCAGAAACTGCTTCCGACAGAACGCGTGAGCTGAGCCGCGGCAGCGGCAGAACCGGAGCCGGATCAAAGTTGTTGTG
GTTTGGAATAGTCGCCGCCCTGTTCACAGTGGCGACCGCTGCAACGCTGGTGCTGGTCAGCATCCGCAACCTGAATGCGG
ACCTTGAGGAATCGGTGCGCAAACAGCAGAGCATCATGCTCAACGGGCAGGTCAACGTGGTGACCACATGGCTTGATGCC
ATGGTGGAACAGGGCAACAGGCTTATCAATGCCGACCTTTTCCGGCTGTATGCTTCAGAAGTGGACACGCTGGACGACGA
TCTTTCGGCGTTGCTGAGCGGAGAAAACACCGAACTGGCCGTGCAGCTGCCCATGATGCGCAATCTGCTGCGGGAGTTTG
TGCAGTATTCCGACTTTGTTTCCGGAAGAATCATGAACCGGCAGGGCAGCAGCTACATCGCCACCGATGCATCCGTCCGG
CCGCTTACTCCGGTTCAGCGGCAGTATGCGGACAGAACACAGCAGACGGGCCTGCCTGTTTTTTCCAATATCCGGCTCAG
CTCTGCCGGACTGGTTGTCGATCTGTTTCTGCCCATTTATCCGCCGCGTTACGAATCAAAAGAACCGACGCCTGTTGCCG
TGCTTATGCTGACTAAAAATGTCTCTGCCAAACTGGGAGATATCCTGCAGGGGGGACATGGCAGAGGGCAGAGCATGAAG
CTGCTGCAGCGCTCGGGTGAGCGGGCTGAGGAAGTCGCACCGTGGCTGGCGGAGGGCGTGCGCACCTCGGCCGGTCTGTC
GCTGGGGGATGACGCCCTGCCTTTCGGCAGCCGTACATCGGTTTCGGGCAGCGGAGAAGTCTATTCCATGGGGCTGCGGG
TGCCCGGGCTGGATTGGTGGCTGGTGCAGGAGGCCGATATTGACGTAGCCAGAGAGCCGCTGCAGCAGCGGGCGCGGGCT
GTGGTCGGGTTCGGTGTGCTGAGCACGCTGGTCATTCTGTGCATGCTGGGCGGGTTCTGGTGGTGGCTGGTGGGCGTGGA
AAGCCGCAAGGTTGCCCGTGAAATGAGCAAGCTGGCAGGTCAGGTGGAAGAGCAGAAACGCTTTCTGGACAGCATCAATG
CCACCATTGCCGACTTTATCTGCCTGAAAGACGATAAAGGCGTTATCCGCTACGCCAACAGAGCGTTTGCCGAGGCTGTG
GGGCGTTCTGAAAAAGAACTCGACGGTCTTGATTTTGCTGCTGTTTTCGGGTTTGACACGGCCCGCAGGCTTACTGCCAC
CGATGAGCAGGTGCTCATGTCCAACGAGCCTCAGACCATCAGCGAAACAATCTATCTGCAGTCCAGAAAGTATTATTTCC
AGATTTCCAAGACGCCTTTCCGTATCGCCCGCCGTGACTGGAGCGGCCTTGTGTATGTGTTCCGCGATATTACGGAACTG
GCTGAAGCGCAGGAACGTTCACGCAAGCTGGTGCAGCAGACAGTGGATGCGCTGGTGCGCACCATTGAACATTCAGACCC
TTATCTGGCCGGCCATTCCCGCACCATGAGCGGGCTGTCGGCGCAGGTGGCCAAAGCCATGGGGCTTTCCGCGCTGGAAG
TGGCCACAGTGCAGGCGGCTGCCAACCTGTCGCAGGTGGGCAAGGTGTTTGTGCCCAAGGAGATACTGAATAAGCCCGGC
GCGCTTGACGAGCGGGAAAAAAAAGAGATGGAGCGCCATGTGGAACATGCCCGCATGGTTCTGGCGGACATCGAGTTTGA
CCTGCCTGTGCTGCAGGTCATCGAACAGATGAATGAAAAGCTTGACGGCAGCGGTTATCCTGCCGGAATTTCAGGAGCTG
CCATCAGCAGTCCGGCGCGGATTCTGGCGGTGATAAATACCTTCTGCGCCATGGTGCGCCCCCGTGCGTATCGTCCGGCA
GTACCGGTGGATGATACGCTGGACGCGCTGGAACGGATGCAGGACAAGTACGATGCCGAAGTGATCGCCCGCCTGCGTGA
AGTGGTGGAATCGGCCACAGGCGAAAAACTGCTGCAGGGGCTGGAAAACGCCGGCAGGGCTTGA

Upstream 100 bases:

>100_bases
GCAATATTCGGTGAATGAAGAGTACCGCTGGGCGCACATTCCCGTGCGGCCTGCCGCAACAGGCAAAGCGGAAGGAAAAC
AATAGATTTTGGAGACTACC

Downstream 100 bases:

>100_bases
CCCCTGCGGGACGGTGCAACTCTGCTGCGCAGGGGCGTCAGTGGATAAGAAAACCGGCGGAACGCATGACGTTCCGCCGG
TTTTTTGCTGCGGAGCTAAC

Product: putative PAS/PAC sensor protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 687; Mature: 686

Protein sequence:

>687_residues
MAETASDRTRELSRGSGRTGAGSKLLWFGIVAALFTVATAATLVLVSIRNLNADLEESVRKQQSIMLNGQVNVVTTWLDA
MVEQGNRLINADLFRLYASEVDTLDDDLSALLSGENTELAVQLPMMRNLLREFVQYSDFVSGRIMNRQGSSYIATDASVR
PLTPVQRQYADRTQQTGLPVFSNIRLSSAGLVVDLFLPIYPPRYESKEPTPVAVLMLTKNVSAKLGDILQGGHGRGQSMK
LLQRSGERAEEVAPWLAEGVRTSAGLSLGDDALPFGSRTSVSGSGEVYSMGLRVPGLDWWLVQEADIDVAREPLQQRARA
VVGFGVLSTLVILCMLGGFWWWLVGVESRKVAREMSKLAGQVEEQKRFLDSINATIADFICLKDDKGVIRYANRAFAEAV
GRSEKELDGLDFAAVFGFDTARRLTATDEQVLMSNEPQTISETIYLQSRKYYFQISKTPFRIARRDWSGLVYVFRDITEL
AEAQERSRKLVQQTVDALVRTIEHSDPYLAGHSRTMSGLSAQVAKAMGLSALEVATVQAAANLSQVGKVFVPKEILNKPG
ALDEREKKEMERHVEHARMVLADIEFDLPVLQVIEQMNEKLDGSGYPAGISGAAISSPARILAVINTFCAMVRPRAYRPA
VPVDDTLDALERMQDKYDAEVIARLREVVESATGEKLLQGLENAGRA

Sequences:

>Translated_687_residues
MAETASDRTRELSRGSGRTGAGSKLLWFGIVAALFTVATAATLVLVSIRNLNADLEESVRKQQSIMLNGQVNVVTTWLDA
MVEQGNRLINADLFRLYASEVDTLDDDLSALLSGENTELAVQLPMMRNLLREFVQYSDFVSGRIMNRQGSSYIATDASVR
PLTPVQRQYADRTQQTGLPVFSNIRLSSAGLVVDLFLPIYPPRYESKEPTPVAVLMLTKNVSAKLGDILQGGHGRGQSMK
LLQRSGERAEEVAPWLAEGVRTSAGLSLGDDALPFGSRTSVSGSGEVYSMGLRVPGLDWWLVQEADIDVAREPLQQRARA
VVGFGVLSTLVILCMLGGFWWWLVGVESRKVAREMSKLAGQVEEQKRFLDSINATIADFICLKDDKGVIRYANRAFAEAV
GRSEKELDGLDFAAVFGFDTARRLTATDEQVLMSNEPQTISETIYLQSRKYYFQISKTPFRIARRDWSGLVYVFRDITEL
AEAQERSRKLVQQTVDALVRTIEHSDPYLAGHSRTMSGLSAQVAKAMGLSALEVATVQAAANLSQVGKVFVPKEILNKPG
ALDEREKKEMERHVEHARMVLADIEFDLPVLQVIEQMNEKLDGSGYPAGISGAAISSPARILAVINTFCAMVRPRAYRPA
VPVDDTLDALERMQDKYDAEVIARLREVVESATGEKLLQGLENAGRA
>Mature_686_residues
AETASDRTRELSRGSGRTGAGSKLLWFGIVAALFTVATAATLVLVSIRNLNADLEESVRKQQSIMLNGQVNVVTTWLDAM
VEQGNRLINADLFRLYASEVDTLDDDLSALLSGENTELAVQLPMMRNLLREFVQYSDFVSGRIMNRQGSSYIATDASVRP
LTPVQRQYADRTQQTGLPVFSNIRLSSAGLVVDLFLPIYPPRYESKEPTPVAVLMLTKNVSAKLGDILQGGHGRGQSMKL
LQRSGERAEEVAPWLAEGVRTSAGLSLGDDALPFGSRTSVSGSGEVYSMGLRVPGLDWWLVQEADIDVAREPLQQRARAV
VGFGVLSTLVILCMLGGFWWWLVGVESRKVAREMSKLAGQVEEQKRFLDSINATIADFICLKDDKGVIRYANRAFAEAVG
RSEKELDGLDFAAVFGFDTARRLTATDEQVLMSNEPQTISETIYLQSRKYYFQISKTPFRIARRDWSGLVYVFRDITELA
EAQERSRKLVQQTVDALVRTIEHSDPYLAGHSRTMSGLSAQVAKAMGLSALEVATVQAAANLSQVGKVFVPKEILNKPGA
LDEREKKEMERHVEHARMVLADIEFDLPVLQVIEQMNEKLDGSGYPAGISGAAISSPARILAVINTFCAMVRPRAYRPAV
PVDDTLDALERMQDKYDAEVIARLREVVESATGEKLLQGLENAGRA

Specific function: Positively regulates the synthesis of extracellular enzymes and extracellular polysaccharides. The cell-cell signaling system encoded by rpf genes is required for full virulence and is implicated in regulation of the formation and dispersal of biofilms [H

COG id: COG2206

COG function: function code T; HD-GYP domain

Gene ontology:

Cell location: Integral Membrane Protein. Inner Membrane [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011006
- InterPro:   IPR003607
- InterPro:   IPR001789 [H]

Pfam domain/function: PF00072 Response_reg [H]

EC number: 2.7.3.- [C]

Molecular weight: Translated: 75703; Mature: 75572

Theoretical pI: Translated: 5.31; Mature: 5.31

Prosite motif: PS50112 PAS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAETASDRTRELSRGSGRTGAGSKLLWFGIVAALFTVATAATLVLVSIRNLNADLEESVR
CCCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
KQQSIMLNGQVNVVTTWLDAMVEQGNRLINADLFRLYASEVDTLDDDLSALLSGENTELA
HHHHEEECCCHHHHHHHHHHHHHHCCCEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEE
VQLPMMRNLLREFVQYSDFVSGRIMNRQGSSYIATDASVRPLTPVQRQYADRTQQTGLPV
EECHHHHHHHHHHHHHHHHHHCEEECCCCCCEEECCCCCCCCCHHHHHHHHHHHHCCCCC
FSNIRLSSAGLVVDLFLPIYPPRYESKEPTPVAVLMLTKNVSAKLGDILQGGHGRGQSMK
EECCEECCCCEEEEHHHCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHCCCCCCCHHHH
LLQRSGERAEEVAPWLAEGVRTSAGLSLGDDALPFGSRTSVSGSGEVYSMGLRVPGLDWW
HHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCEE
LVQEADIDVAREPLQQRARAVVGFGVLSTLVILCMLGGFWWWLVGVESRKVAREMSKLAG
EEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QVEEQKRFLDSINATIADFICLKDDKGVIRYANRAFAEAVGRSEKELDGLDFAAVFGFDT
HHHHHHHHHHHHHHHHHHHEEECCCCCHHHHHHHHHHHHHCCCHHHCCCCCCHHHHCCCH
ARRLTATDEQVLMSNEPQTISETIYLQSRKYYFQISKTPFRIARRDWSGLVYVFRDITEL
HHHHCCCCHHHHHCCCCCHHHHHHEEECCEEEEEECCCHHHHHHHCCCHHHHHHHHHHHH
AEAQERSRKLVQQTVDALVRTIEHSDPYLAGHSRTMSGLSAQVAKAMGLSALEVATVQAA
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHH
ANLSQVGKVFVPKEILNKPGALDEREKKEMERHVEHARMVLADIEFDLPVLQVIEQMNEK
HHHHHHHHHCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
LDGSGYPAGISGAAISSPARILAVINTFCAMVRPRAYRPAVPVDDTLDALERMQDKYDAE
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHH
VIARLREVVESATGEKLLQGLENAGRA
HHHHHHHHHHHCCHHHHHHHHHHCCCC
>Mature Secondary Structure 
AETASDRTRELSRGSGRTGAGSKLLWFGIVAALFTVATAATLVLVSIRNLNADLEESVR
CCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
KQQSIMLNGQVNVVTTWLDAMVEQGNRLINADLFRLYASEVDTLDDDLSALLSGENTELA
HHHHEEECCCHHHHHHHHHHHHHHCCCEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEE
VQLPMMRNLLREFVQYSDFVSGRIMNRQGSSYIATDASVRPLTPVQRQYADRTQQTGLPV
EECHHHHHHHHHHHHHHHHHHCEEECCCCCCEEECCCCCCCCCHHHHHHHHHHHHCCCCC
FSNIRLSSAGLVVDLFLPIYPPRYESKEPTPVAVLMLTKNVSAKLGDILQGGHGRGQSMK
EECCEECCCCEEEEHHHCCCCCCCCCCCCCCEEEEEEECCCHHHHHHHHCCCCCCCHHHH
LLQRSGERAEEVAPWLAEGVRTSAGLSLGDDALPFGSRTSVSGSGEVYSMGLRVPGLDWW
HHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCEE
LVQEADIDVAREPLQQRARAVVGFGVLSTLVILCMLGGFWWWLVGVESRKVAREMSKLAG
EEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QVEEQKRFLDSINATIADFICLKDDKGVIRYANRAFAEAVGRSEKELDGLDFAAVFGFDT
HHHHHHHHHHHHHHHHHHHEEECCCCCHHHHHHHHHHHHHCCCHHHCCCCCCHHHHCCCH
ARRLTATDEQVLMSNEPQTISETIYLQSRKYYFQISKTPFRIARRDWSGLVYVFRDITEL
HHHHCCCCHHHHHCCCCCHHHHHHEEECCEEEEEECCCHHHHHHHCCCHHHHHHHHHHHH
AEAQERSRKLVQQTVDALVRTIEHSDPYLAGHSRTMSGLSAQVAKAMGLSALEVATVQAA
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHH
ANLSQVGKVFVPKEILNKPGALDEREKKEMERHVEHARMVLADIEFDLPVLQVIEQMNEK
HHHHHHHHHCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
LDGSGYPAGISGAAISSPARILAVINTFCAMVRPRAYRPAVPVDDTLDALERMQDKYDAE
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHH
VIARLREVVESATGEKLLQGLENAGRA
HHHHHHHHHHHCCHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Transferring phosphorus-containing groups [C]

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11123673 [H]