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The map label for this gene is insF1 [C]

Identifier: 78356442

GI number: 78356442

Start: 1412821

End: 1413660

Strand: Reverse

Name: insF1 [C]

Synonym: Dde_1397

Alternate gene names: 78356442

Gene position: 1413660-1412821 (Counterclockwise)

Preceding gene: 78356443

Following gene: 78356441

Centisome position: 37.9

GC content: 49.29

Gene sequence:

>840_bases
GTGAAGAAGATGTGCCATATGCTCGGGGTTTCCCAGAGCGGCTTTTACTCGTGGGCGACTCGTCCCCCGTCTCAAAGGGC
AAGGCATAATGCTCAATTGCGCGTCCGTATCAGAGAATTGTTCGAGGAACACAAAAGAACAGCTGGAAGTCCGATGATTA
CAGAAGACTTACGGGCTGAAGACGCTTTTCGGCATGTTAGTAGATCTCGGGTGGCTAGGCACATGCGGGAAATGGGGTTG
CGCTGCCAGACCATGAAGAAGTTTGTTGTCACGACCGACTCCTCTCACTCTGAGCCTGTTGCCCCGAATGTCCTGAATCG
GCGGTTTTCTGCCTCAGCTCCAAACGTCACGTGGGTCAGCGACATTACTTACATAAAAATAGGCAGAACGTGGCATTACC
TGACGGTATTCATCGACCTGTATTCCCGCTTAGTTGTGGGGTGGGATCTCAGTGCATCGCTGGAGCGGCATTCTGTTATT
CACGCGTTTCGGAAAGCAGTGGCCCGTCGAAGGCCTTCAAAAGGGTTGCTTGTCCATAGCGATCGTGGAATCCAATATGC
CAGTAGGGATTTCAGAAAGGAATTACACCGACATGGCTGTATTCAAAGCATGAGTCGAAAAGGCAACTGTTGGGACAATG
CCGTTGCTGAATCATTCTTCCATACCCTGAAAACCCAGTTGATCTATCAAAGGAAATTTACAGACAGGCGTGAAGCAGAG
CTTGCTCTCTTCCATTACATAGAGGCGTATTACAATCGTCGTCGGAGGCATTCCAGTAACGGTTGGATGTCTCCTGCGGC
TTTCGAAAATTTCAACCAGGAATACAAAAAAGTAGCTTAA

Upstream 100 bases:

>100_bases
CAGAATTGGAGCGGGATATTTTAAAAAAAGCCTTGGCCATCTTCAGCAGCGCACCGAAATAAAATTTCAAATTATCAAAA
ATTGCCGCTCGTTATTTCCG

Downstream 100 bases:

>100_bases
CTGGTACTCCACAAAAATGTGGCAGGATCACTTTATAGCCAAAGCCAGCAGACGGCTGGGCATACCGGAACCGCGCCTGC
CCTACCGTCATATCCGCAGG

Product: transposase-like

Products: NA

Alternate protein names: ISO-S3 31 kDa protein [H]

Number of amino acids: Translated: 279; Mature: 279

Protein sequence:

>279_residues
MKKMCHMLGVSQSGFYSWATRPPSQRARHNAQLRVRIRELFEEHKRTAGSPMITEDLRAEDAFRHVSRSRVARHMREMGL
RCQTMKKFVVTTDSSHSEPVAPNVLNRRFSASAPNVTWVSDITYIKIGRTWHYLTVFIDLYSRLVVGWDLSASLERHSVI
HAFRKAVARRRPSKGLLVHSDRGIQYASRDFRKELHRHGCIQSMSRKGNCWDNAVAESFFHTLKTQLIYQRKFTDRREAE
LALFHYIEAYYNRRRRHSSNGWMSPAAFENFNQEYKKVA

Sequences:

>Translated_279_residues
MKKMCHMLGVSQSGFYSWATRPPSQRARHNAQLRVRIRELFEEHKRTAGSPMITEDLRAEDAFRHVSRSRVARHMREMGL
RCQTMKKFVVTTDSSHSEPVAPNVLNRRFSASAPNVTWVSDITYIKIGRTWHYLTVFIDLYSRLVVGWDLSASLERHSVI
HAFRKAVARRRPSKGLLVHSDRGIQYASRDFRKELHRHGCIQSMSRKGNCWDNAVAESFFHTLKTQLIYQRKFTDRREAE
LALFHYIEAYYNRRRRHSSNGWMSPAAFENFNQEYKKVA
>Mature_279_residues
MKKMCHMLGVSQSGFYSWATRPPSQRARHNAQLRVRIRELFEEHKRTAGSPMITEDLRAEDAFRHVSRSRVARHMREMGL
RCQTMKKFVVTTDSSHSEPVAPNVLNRRFSASAPNVTWVSDITYIKIGRTWHYLTVFIDLYSRLVVGWDLSASLERHSVI
HAFRKAVARRRPSKGLLVHSDRGIQYASRDFRKELHRHGCIQSMSRKGNCWDNAVAESFFHTLKTQLIYQRKFTDRREAE
LALFHYIEAYYNRRRRHSSNGWMSPAAFENFNQEYKKVA

Specific function: Involved in the transposition of the insertion sequence is3 [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 integrase catalytic domain [H]

Homologues:

Organism=Homo sapiens, GI310129419, Length=233, Percent_Identity=29.6137339055794, Blast_Score=108, Evalue=5e-24,
Organism=Escherichia coli, GI1788405, Length=274, Percent_Identity=40.1459854014599, Blast_Score=205, Evalue=3e-54,
Organism=Escherichia coli, GI1787263, Length=274, Percent_Identity=40.1459854014599, Blast_Score=205, Evalue=3e-54,
Organism=Escherichia coli, GI1786753, Length=274, Percent_Identity=40.1459854014599, Blast_Score=205, Evalue=3e-54,
Organism=Escherichia coli, GI1786570, Length=274, Percent_Identity=40.1459854014599, Blast_Score=205, Evalue=3e-54,
Organism=Escherichia coli, GI1786490, Length=274, Percent_Identity=40.1459854014599, Blast_Score=205, Evalue=3e-54,
Organism=Escherichia coli, GI1789981, Length=240, Percent_Identity=34.1666666666667, Blast_Score=129, Evalue=1e-31,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001584
- InterPro:   IPR012337 [H]

Pfam domain/function: PF00665 rve [H]

EC number: NA

Molecular weight: Translated: 32805; Mature: 32805

Theoretical pI: Translated: 11.04; Mature: 11.04

Prosite motif: PS50994 INTEGRASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKMCHMLGVSQSGFYSWATRPPSQRARHNAQLRVRIRELFEEHKRTAGSPMITEDLRAE
CCHHHHHHCCCCCCCCCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
DAFRHVSRSRVARHMREMGLRCQTMKKFVVTTDSSHSEPVAPNVLNRRFSASAPNVTWVS
HHHHHHHHHHHHHHHHHHCCHHHHHHHHHEECCCCCCCCCCCHHHHHCCCCCCCCEEEEC
DITYIKIGRTWHYLTVFIDLYSRLVVGWDLSASLERHSVIHAFRKAVARRRPSKGLLVHS
CEEEEEECCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEC
DRGIQYASRDFRKELHRHGCIQSMSRKGNCWDNAVAESFFHTLKTQLIYQRKFTDRREAE
CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
LALFHYIEAYYNRRRRHSSNGWMSPAAFENFNQEYKKVA
HHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCC
>Mature Secondary Structure
MKKMCHMLGVSQSGFYSWATRPPSQRARHNAQLRVRIRELFEEHKRTAGSPMITEDLRAE
CCHHHHHHCCCCCCCCCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
DAFRHVSRSRVARHMREMGLRCQTMKKFVVTTDSSHSEPVAPNVLNRRFSASAPNVTWVS
HHHHHHHHHHHHHHHHHHCCHHHHHHHHHEECCCCCCCCCCCHHHHHCCCCCCCCEEEEC
DITYIKIGRTWHYLTVFIDLYSRLVVGWDLSASLERHSVIHAFRKAVARRRPSKGLLVHS
CEEEEEECCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEC
DRGIQYASRDFRKELHRHGCIQSMSRKGNCWDNAVAESFFHTLKTQLIYQRKFTDRREAE
CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
LALFHYIEAYYNRRRRHSSNGWMSPAAFENFNQEYKKVA
HHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2824781 [H]