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The map label for this gene is yccM [H]

Identifier: 78356099

GI number: 78356099

Start: 1080176

End: 1081195

Strand: Reverse

Name: yccM [H]

Synonym: Dde_1052

Alternate gene names: 78356099

Gene position: 1081195-1080176 (Counterclockwise)

Preceding gene: 78356101

Following gene: 78356098

Centisome position: 28.98

GC content: 60.69

Gene sequence:

>1020_bases
ATGCTTTCACGCTCCCGCATACGGCGCGGCAGGATTTCGCCTGCACGCGTGCGACGCACTGTACAGCTTGCCTTTGGCCT
GTTCTGCATTTTCTGCGGCTGGCGTTTCTTTCTTTATTATCAATGGGCCACCGGCGCATCGGCCGTCTATGTACCCAAAC
CGCCCATGGTCGAAGGGTTTCTGCCCATCAGCGCGCTGCTGGGGGCCGTGCATTTTTTCAATACCGGCATGTGGGACCCC
GTGCATCCCGCAGGGCTGACCATCTTTTTCGCGGCACTGGCTATCTGCCTGCTGCTGCGCAAGGGGTTCTGCGGGTACAT
ATGCCCCGCAGGCTGGGCCAGCAATCTGCTGGAACGCACCGGCAAACGCCTGGGGCTGAACCGCAGCCGTCCGGCACCTG
CACGCACTGCGGTGCATAAAGCCATCCGGACAGTGCTGCACGCTCCCAAGTATATCCTGATGGCCGGTTTTCTGTGGACA
ATGAGCACCGGCATGGACGCACGGGCAGTGGAATCCTTTCTGACCGGCCCTTACAACATGGTGGCCGACAGCAAAATGCT
GCTCTTTTTTCTGCACCCTTCGGCCACGGCGCTGACAGTGCTGGCGGTACTGGCCCTGCTGAGCCTTTTTGTTTCCAACC
CGTGGTGCCGTTTTCTGTGTCCTTATGGCGCGCTGCTGGGCATAGCCGCCCTGTTCAGCCCCTGCGCCGTACGGCGCAAT
GCTGCAGCATGCACCGGCTGCGGCCGGTGTTCCGCGGCCTGCCCTGCCGGTATAGCCGTGCATGCGCAGCAGCGGGTCAA
CAGGGCGGAATGCATGGGCTGCACCGAATGCGTAAGCAGCTGCCCGCAGAAAGACTGCCTGCAGCTGACCTGCCTGAACA
AACCACAGTATGACTGGGCCATCGCCTACGGCACTGTGGCACTGCTGTGGACGGCGTATCTGGCGGCGGTCTGGTGGGGA
AAATGGGATGTTTCAATTGACGCCGCTCTGATACAGAAACTGCACAGCACCATGATGTAA

Upstream 100 bases:

>100_bases
TCCGCTTGCAACTGTGCCGCCGGTGCGCTAGTGCGGACAGCACGGCACACATCCATCTCTGCATACCGCCGCAACGCGGC
GCACAAGGGGTGACACACTC

Downstream 100 bases:

>100_bases
CACGTTTCAGGCTGTTGCGCCTCTTGCCTTCGCGCCGGACGGGATTATCATTGTCGTCAGGGGGGTATTGTTCCTCCCTT
CTGACGTGTTTTCCCGCGAT

Product: iron-sulfur cluster-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 339; Mature: 339

Protein sequence:

>339_residues
MLSRSRIRRGRISPARVRRTVQLAFGLFCIFCGWRFFLYYQWATGASAVYVPKPPMVEGFLPISALLGAVHFFNTGMWDP
VHPAGLTIFFAALAICLLLRKGFCGYICPAGWASNLLERTGKRLGLNRSRPAPARTAVHKAIRTVLHAPKYILMAGFLWT
MSTGMDARAVESFLTGPYNMVADSKMLLFFLHPSATALTVLAVLALLSLFVSNPWCRFLCPYGALLGIAALFSPCAVRRN
AAACTGCGRCSAACPAGIAVHAQQRVNRAECMGCTECVSSCPQKDCLQLTCLNKPQYDWAIAYGTVALLWTAYLAAVWWG
KWDVSIDAALIQKLHSTMM

Sequences:

>Translated_339_residues
MLSRSRIRRGRISPARVRRTVQLAFGLFCIFCGWRFFLYYQWATGASAVYVPKPPMVEGFLPISALLGAVHFFNTGMWDP
VHPAGLTIFFAALAICLLLRKGFCGYICPAGWASNLLERTGKRLGLNRSRPAPARTAVHKAIRTVLHAPKYILMAGFLWT
MSTGMDARAVESFLTGPYNMVADSKMLLFFLHPSATALTVLAVLALLSLFVSNPWCRFLCPYGALLGIAALFSPCAVRRN
AAACTGCGRCSAACPAGIAVHAQQRVNRAECMGCTECVSSCPQKDCLQLTCLNKPQYDWAIAYGTVALLWTAYLAAVWWG
KWDVSIDAALIQKLHSTMM
>Mature_339_residues
MLSRSRIRRGRISPARVRRTVQLAFGLFCIFCGWRFFLYYQWATGASAVYVPKPPMVEGFLPISALLGAVHFFNTGMWDP
VHPAGLTIFFAALAICLLLRKGFCGYICPAGWASNLLERTGKRLGLNRSRPAPARTAVHKAIRTVLHAPKYILMAGFLWT
MSTGMDARAVESFLTGPYNMVADSKMLLFFLHPSATALTVLAVLALLSLFVSNPWCRFLCPYGALLGIAALFSPCAVRRN
AAACTGCGRCSAACPAGIAVHAQQRVNRAECMGCTECVSSCPQKDCLQLTCLNKPQYDWAIAYGTVALLWTAYLAAVWWG
KWDVSIDAALIQKLHSTMM

Specific function: Unknown

COG id: COG0348

COG function: function code C; Polyferredoxin

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 4Fe-4S ferredoxin-type domains [H]

Homologues:

Organism=Escherichia coli, GI1787226, Length=320, Percent_Identity=33.75, Blast_Score=188, Evalue=5e-49,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017896
- InterPro:   IPR017900 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 37205; Mature: 37205

Theoretical pI: Translated: 9.65; Mature: 9.65

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

5.3 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
8.6 %Cys+Met (Translated Protein)
5.3 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
8.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLSRSRIRRGRISPARVRRTVQLAFGLFCIFCGWRFFLYYQWATGASAVYVPKPPMVEGF
CCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCEEEECCCCCHHHH
LPISALLGAVHFFNTGMWDPVHPAGLTIFFAALAICLLLRKGFCGYICPAGWASNLLERT
HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH
GKRLGLNRSRPAPARTAVHKAIRTVLHAPKYILMAGFLWTMSTGMDARAVESFLTGPYNM
HHHCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHH
VADSKMLLFFLHPSATALTVLAVLALLSLFVSNPWCRFLCPYGALLGIAALFSPCAVRRN
HCCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCC
AAACTGCGRCSAACPAGIAVHAQQRVNRAECMGCTECVSSCPQKDCLQLTCLNKPQYDWA
CHHHCCCCCCCCCCCCCHHHHHHHHCCHHHHCCHHHHHHHCCHHHCEEEEECCCCCCCHH
IAYGTVALLWTAYLAAVWWGKWDVSIDAALIQKLHSTMM
HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCC
>Mature Secondary Structure
MLSRSRIRRGRISPARVRRTVQLAFGLFCIFCGWRFFLYYQWATGASAVYVPKPPMVEGF
CCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCEEEECCCCCHHHH
LPISALLGAVHFFNTGMWDPVHPAGLTIFFAALAICLLLRKGFCGYICPAGWASNLLERT
HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHH
GKRLGLNRSRPAPARTAVHKAIRTVLHAPKYILMAGFLWTMSTGMDARAVESFLTGPYNM
HHHCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHH
VADSKMLLFFLHPSATALTVLAVLALLSLFVSNPWCRFLCPYGALLGIAALFSPCAVRRN
HCCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCC
AAACTGCGRCSAACPAGIAVHAQQRVNRAECMGCTECVSSCPQKDCLQLTCLNKPQYDWA
CHHHCCCCCCCCCCCCCHHHHHHHHCCHHHHCCHHHHHHHCCHHHCEEEEECCCCCCCHH
IAYGTVALLWTAYLAAVWWGKWDVSIDAALIQKLHSTMM
HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]