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The map label for this gene is ygcL [H]

Identifier: 78355911

GI number: 78355911

Start: 890546

End: 892150

Strand: Reverse

Name: ygcL [H]

Synonym: Dde_0864

Alternate gene names: 78355911

Gene position: 892150-890546 (Counterclockwise)

Preceding gene: 78355912

Following gene: 78355910

Centisome position: 23.92

GC content: 58.38

Gene sequence:

>1605_bases
ATGAAGACGCTTAACATTCTGTCTGACCAATGGCTGCCCGTTATCCTGGCTGACGGGAAGCGCATACGTATTGCCCCGTG
GGAACTGACGGCAGACCCCCGACCTGTGGCTCTGGATATACCGCGGCCGGATTTCGGCGGGGCCATGCTGGAGTTTCTGG
TGGGCTGCATGCAGACCATGTGCCCCCCCCAAAGCCGAAAGGATTGGCGGAGCTGGCGGAAAACACCGCCTCAACCCCAA
ACTCTTCGAACGGCAATGGAACCGTTTATTCCACACTTCCATCTGCTGGGTGAACGCCCTCTCTTCATGCAGGATCTGAC
GCTGAAGCAGGAAGAAGAAAACGTCATGGGCGTGGCCGCCCTGCTCATCGATTCCCCCGGCGAAAACGCCATCAAAAATG
ATACAGATTTTTTCGTCAAACGAGGCCGGATAGAGACTCTGTGTCCGGCCTGCGCCGCCATGGCCCTGTATACCATGCAG
GCATTTGCCCCCTCCGGTGGTGCGGGCTACCGCACCTCGCTACGCGGGGGCGGCCCTCTTTCCACGCTGGTCTTGGGCGA
AACTCTCTGGGAAACCGTGTGGAACAACGTGCTGGTGGCAGAGAGCACTGACTGGCGCATACCCGACGGGCACGACCCTC
TGGGCCGCATACTGCCGTGGACTGTCCCCACCCGCGACAGCAAGAAAAAAGGCACGGCGATTCTGCCGGCAACAGGACAC
AACCTGCTGCACTTCTGGGCCATGCCGCGTCGTTTCCGCCTGCATCCCGAAAACCTCTCTGACCCGGCAGCCTGCGATAT
CTGCGGTACCCCCTCCACAACAGTCATCCGACAAATTGGAGCCAAAAACTACGGCAACAACTACGAAGGGGCATGGCAGC
ACCCGCTCACACCATATCGCGAGCAAGGAAAAGGAAAACTCGCTCTGTCCGTCAAGGGAGCATCGGAATGCACAGCCTAT
CACCAATGGCTGGGCCTGCTTTACGGGCCTCTTGGTAGTAAAAACAAGACGCTGGTGGCGGCCCAGTGCATACGCCAATT
CCGCGAACTGCTGCCGGCTAGCGCCGTACGAGTGCGTGCTTTCGGCTACGACATGGATAACATGAAAGCCCGGCAATGGT
GCGAAGGCGAGATGCCCCTTTACGCGCTGGATCCTGCCGAAACGGCAATCCTGCAGAATGAAATTGAGCTATGGCTCGAC
GCGGCAGACAAAACACGTTCCAACCTGATCAAAGCGCTCAAGCAAGCCCTGTTCGCAGATGGAGGTCGCAACGCCAAGGC
AGACCAGACACTGCTCGCCAATGCTTCGACGGCATTCTGGTCCCGCACGGAGTCGGCTTTCTACTCACTGGCAGCCCGCT
TCGTAGAGTCGGTGCAACAGCAGGACGACGCGCAGCAGATTGCCCTTGCCAAAATGCTTCGCAATGAGTGGGCAAACAGA
ATTCTTGCCGCCACCGACGCCATTTTCTCGGAACAGGCGGCCAGCGGCGCATTCGATGAAAGACAGGCTCCGCGTATTTA
CGGAGCTCTCAACCAGATGCGCCGGTTTAACCGGGGCAACTGCAACAAGGTGTTGGCAACTGGAAGTACAGGAGACGGCA
AATGA

Upstream 100 bases:

>100_bases
AACACGTTTAAAACATCCCTGAATTTTTTTCAAACCCGCTGGCATATCAGCGGGTTTTATTATACCCATCAAAATCAATA
ACCCTGTATCGGAGTATGCC

Downstream 100 bases:

>100_bases
CAGAATTCGGAGCTTTTTTAAAAGAGGAGGCCTTCTGGACATGCCTGCGTGAATGGTGGGAAGGGCTCGCGCAGAACCGC
GGCCCGAGGGCAGAATTGCG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 534; Mature: 534

Protein sequence:

>534_residues
MKTLNILSDQWLPVILADGKRIRIAPWELTADPRPVALDIPRPDFGGAMLEFLVGCMQTMCPPQSRKDWRSWRKTPPQPQ
TLRTAMEPFIPHFHLLGERPLFMQDLTLKQEEENVMGVAALLIDSPGENAIKNDTDFFVKRGRIETLCPACAAMALYTMQ
AFAPSGGAGYRTSLRGGGPLSTLVLGETLWETVWNNVLVAESTDWRIPDGHDPLGRILPWTVPTRDSKKKGTAILPATGH
NLLHFWAMPRRFRLHPENLSDPAACDICGTPSTTVIRQIGAKNYGNNYEGAWQHPLTPYREQGKGKLALSVKGASECTAY
HQWLGLLYGPLGSKNKTLVAAQCIRQFRELLPASAVRVRAFGYDMDNMKARQWCEGEMPLYALDPAETAILQNEIELWLD
AADKTRSNLIKALKQALFADGGRNAKADQTLLANASTAFWSRTESAFYSLAARFVESVQQQDDAQQIALAKMLRNEWANR
ILAATDAIFSEQAASGAFDERQAPRIYGALNQMRRFNRGNCNKVLATGSTGDGK

Sequences:

>Translated_534_residues
MKTLNILSDQWLPVILADGKRIRIAPWELTADPRPVALDIPRPDFGGAMLEFLVGCMQTMCPPQSRKDWRSWRKTPPQPQ
TLRTAMEPFIPHFHLLGERPLFMQDLTLKQEEENVMGVAALLIDSPGENAIKNDTDFFVKRGRIETLCPACAAMALYTMQ
AFAPSGGAGYRTSLRGGGPLSTLVLGETLWETVWNNVLVAESTDWRIPDGHDPLGRILPWTVPTRDSKKKGTAILPATGH
NLLHFWAMPRRFRLHPENLSDPAACDICGTPSTTVIRQIGAKNYGNNYEGAWQHPLTPYREQGKGKLALSVKGASECTAY
HQWLGLLYGPLGSKNKTLVAAQCIRQFRELLPASAVRVRAFGYDMDNMKARQWCEGEMPLYALDPAETAILQNEIELWLD
AADKTRSNLIKALKQALFADGGRNAKADQTLLANASTAFWSRTESAFYSLAARFVESVQQQDDAQQIALAKMLRNEWANR
ILAATDAIFSEQAASGAFDERQAPRIYGALNQMRRFNRGNCNKVLATGSTGDGK
>Mature_534_residues
MKTLNILSDQWLPVILADGKRIRIAPWELTADPRPVALDIPRPDFGGAMLEFLVGCMQTMCPPQSRKDWRSWRKTPPQPQ
TLRTAMEPFIPHFHLLGERPLFMQDLTLKQEEENVMGVAALLIDSPGENAIKNDTDFFVKRGRIETLCPACAAMALYTMQ
AFAPSGGAGYRTSLRGGGPLSTLVLGETLWETVWNNVLVAESTDWRIPDGHDPLGRILPWTVPTRDSKKKGTAILPATGH
NLLHFWAMPRRFRLHPENLSDPAACDICGTPSTTVIRQIGAKNYGNNYEGAWQHPLTPYREQGKGKLALSVKGASECTAY
HQWLGLLYGPLGSKNKTLVAAQCIRQFRELLPASAVRVRAFGYDMDNMKARQWCEGEMPLYALDPAETAILQNEIELWLD
AADKTRSNLIKALKQALFADGGRNAKADQTLLANASTAFWSRTESAFYSLAARFVESVQQQDDAQQIALAKMLRNEWANR
ILAATDAIFSEQAASGAFDERQAPRIYGALNQMRRFNRGNCNKVLATGSTGDGK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1789118, Length=370, Percent_Identity=26.2162162162162, Blast_Score=92, Evalue=7e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013381 [H]

Pfam domain/function: PF09481 CRISPR_Cse1 [H]

EC number: NA

Molecular weight: Translated: 59315; Mature: 59315

Theoretical pI: Translated: 8.53; Mature: 8.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTLNILSDQWLPVILADGKRIRIAPWELTADPRPVALDIPRPDFGGAMLEFLVGCMQTM
CCCCCCCCCCCCEEEEECCCEEEEECEEECCCCCCEEEECCCCCCCHHHHHHHHHHHHHH
CPPQSRKDWRSWRKTPPQPQTLRTAMEPFIPHFHLLGERPLFMQDLTLKQEEENVMGVAA
CCCCCHHHHHHHCCCCCCHHHHHHHHHHHCCHHHHHCCCCCHHHHCCCCHHHHHHHEEEE
LLIDSPGENAIKNDTDFFVKRGRIETLCPACAAMALYTMQAFAPSGGAGYRTSLRGGGPL
EEEECCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCH
STLVLGETLWETVWNNVLVAESTDWRIPDGHDPLGRILPWTVPTRDSKKKGTAILPATGH
HHHHHHHHHHHHHHCCEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCEEEECCCC
NLLHFWAMPRRFRLHPENLSDPAACDICGTPSTTVIRQIGAKNYGNNYEGAWQHPLTPYR
CCEEECCCCCCEEECCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCHH
EQGKGKLALSVKGASECTAYHQWLGLLYGPLGSKNKTLVAAQCIRQFRELLPASAVRVRA
HCCCCEEEEEECCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCHHHEEEEE
FGYDMDNMKARQWCEGEMPLYALDPAETAILQNEIELWLDAADKTRSNLIKALKQALFAD
ECCCCCCHHHHHHCCCCCCEEEECCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCC
GGRNAKADQTLLANASTAFWSRTESAFYSLAARFVESVQQQDDAQQIALAKMLRNEWANR
CCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ILAATDAIFSEQAASGAFDERQAPRIYGALNQMRRFNRGNCNKVLATGSTGDGK
HHHHHHHHHHHHHHCCCCCHHCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCC
>Mature Secondary Structure
MKTLNILSDQWLPVILADGKRIRIAPWELTADPRPVALDIPRPDFGGAMLEFLVGCMQTM
CCCCCCCCCCCCEEEEECCCEEEEECEEECCCCCCEEEECCCCCCCHHHHHHHHHHHHHH
CPPQSRKDWRSWRKTPPQPQTLRTAMEPFIPHFHLLGERPLFMQDLTLKQEEENVMGVAA
CCCCCHHHHHHHCCCCCCHHHHHHHHHHHCCHHHHHCCCCCHHHHCCCCHHHHHHHEEEE
LLIDSPGENAIKNDTDFFVKRGRIETLCPACAAMALYTMQAFAPSGGAGYRTSLRGGGPL
EEEECCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCH
STLVLGETLWETVWNNVLVAESTDWRIPDGHDPLGRILPWTVPTRDSKKKGTAILPATGH
HHHHHHHHHHHHHHCCEEEECCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCEEEECCCC
NLLHFWAMPRRFRLHPENLSDPAACDICGTPSTTVIRQIGAKNYGNNYEGAWQHPLTPYR
CCEEECCCCCCEEECCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCHH
EQGKGKLALSVKGASECTAYHQWLGLLYGPLGSKNKTLVAAQCIRQFRELLPASAVRVRA
HCCCCEEEEEECCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCHHHEEEEE
FGYDMDNMKARQWCEGEMPLYALDPAETAILQNEIELWLDAADKTRSNLIKALKQALFAD
ECCCCCCHHHHHHCCCCCCEEEECCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCC
GGRNAKADQTLLANASTAFWSRTESAFYSLAARFVESVQQQDDAQQIALAKMLRNEWANR
CCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ILAATDAIFSEQAASGAFDERQAPRIYGALNQMRRFNRGNCNKVLATGSTGDGK
HHHHHHHHHHHHHHCCCCCHHCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]