Click here to switch to the map view.

The map label for this gene is ygcB [H]

Identifier: 78355912

GI number: 78355912

Start: 892249

End: 894927

Strand: Reverse

Name: ygcB [H]

Synonym: Dde_0865

Alternate gene names: 78355912

Gene position: 894927-892249 (Counterclockwise)

Preceding gene: 78355915

Following gene: 78355911

Centisome position: 23.99

GC content: 57.11

Gene sequence:

>2679_bases
ATGGCAGCTCGAGTTTCAAATGATTCCTATTACGGCTATTGGGCAAAATTCGACAGAAACATTGCGCCATACGTTCACTT
ACTCCCCTACCATCTGCTGGATGTAGCCGCAGTATATGACTCACTTCTCAACCACACCCCGGTGTTGCAACGACGAATCT
GCAGGCTCTCGCAGCTTTCCCCTGATACTATACGGGCATTACTCCGCACTCTTGCCGTCCTGCACGATCTGGGTAAATTT
TCCCAGATCTTTCAGGAGCAACAGCCGGAAGCCCGGGCTATACTGACAGACACACCGCCCACCGGCCTTGGCGGCAACAC
ACACCACACAGCGTTGGGGCAATGGCTCTACTCTTCCGTTGTCCGTCAGGCACTTGAAGACTGTCATGCGGTTTTTTCCG
AAGACGCCATGGACACCATGCGCCCCCTTGTCAATGCCACCTTCGGACATCACGGAACACCGGAGCAGGAATCAGGCTCC
ATACGCCACTTCCGGCGTGCAACAGAACATGCCAAGGCTTTTGCCACCGAAGCTGCAAACTTTCTGCTGCCGCCCATAGA
AATTCCCGAAAGTGAACAGGCCTTCCGCGCTCTATCATGGCTTCATGCGGGGCTTATGGTCGTGGCTGACTGGCTCGGCT
CAAATACCCGCTGGTTTCCATACCATGCGGAACAAATGCCTCTGGAAACATATTGGAACGAAATAGCGCTGCCTCGTGCT
GACCGTGCCGTGCGTGAATCCGGTATTCCGGCAGCCCCACCGCACCCGAAGCGAGACTTCACCCGTCTGCTCCCCCACCT
GCCGGCAAATGCCGGGCCGAGCCCGCTGCAGTCCCATGCCCTGTATGATGCCATCCGGAGCAGCGGCCCTCAGTTGCATA
TATTTGAAGACATGACCGGAGGCGGCAAAACAGAGGCAGCCCTGCTTTGCGCTCACGGACTCATGACCATGTCCGAAGCG
GACGGTTTTTACATCGCCCTGCCGACCATGGCTACTGCCAATGGCATGTATGCGCGGCTGGCTCAATCGTACAGGGCGCT
CTTTGGCAGTGATAAAGACAGCGCTCAGGATTCTCCTATCTCTCTTATACTGGCGCATGGTGCCCGAAACCTCTCCGACC
TGTTCATGTCCGGCGTACCCGATGCCAACGCAGAGTCTGCCATTGATCCTCAGAGCGATGGTCGGGCCTACTGCGCCACA
TGGCTTGCGGATTCGCGGAAAAAAGCACTGCTCTCCCCGTGTGGCGTTGGCACAATTGATCAGGCGCTGCTCGCAGTGCT
GCCCGCACGTCATCAGTGTCTTCGCCTGCTCGGTCTTGCCCGCAACGTACTGGTAATAGACGAGGTACACGCCTACGACG
AATACACCGGTTCACTGCTGCAGGCTCTGCTCCGCTTTCATGCCGCCCTCGGGGGCAGCGCCATCCTTCTTTCCGCCACA
CTTACGCGCCGGATACGCCAGAACCTTGCCGCAGCGTTTTGCGAGGGCGCAGGGTATCCCGCCCCCACGCTGAACGTTGA
TGACTTTCCGCTGGCAACCACAGCCGACAGTCATGGAATGCGGGAAACTGCCTTTCCAGCCACACGCCGTTCAACAATCC
ATGTAAAGCTGACTGCAGACGAAAACGCCATGTACAAAGCGCTGTTGGAAACCCGCGCCGCCGGCGGTTGCGCATGCTGG
ATACGCAACACGGTGGATCAGGCGAGAGAAGCCTATGAGCGTCTGCGTGAACAACATGGCGTGCCGGAAAAAGATATAAT
CCTGTTCCATGCCCGATTCGCCATGGCCGACCGCCAGCACATCGAGCAGCGCGTGCTGGCCTTGTTTGGAAAAAACAGCA
CGCAGGATGATCGGCGCAGCAAGATACTGGTTGCAACGCAGGTTGTGGAACAAAGTCTGGATCTGGATTTCGATCAGCTG
AACTCGGACCACGCCCCTATGGAACTGCTCATTCAGCGCGGCGGCCGCTGCCACCGGCACAACCGGAACCGCCCCCGGGG
GCTTGAATCTCCCCGCATGCTTGTGCTGGCCCCGCAGGCGCGGAACGATGCCCCGCAGGATTGGTACGCTTCGGTATTAG
GCAAAGCACAGTTTGTGTACCCTGTGCAGGCGCCGCTCTGGCGTGCGGCAAAACTGCTGGAAAAAGTAAAGCAACTCACG
CTGCCCGATGATGCCCGCAGACTTGTGGAATCTGTATACGACGATAACGAGTTTGCTCCTGAATCCCTGCAGAACGCAGA
TGAACGGTATCTGGCCGAAGCGTTGGGAAAAAAAGATCTCGCCCGCTTCAATACATTGAAACTGGAAGCAGGCTATTCTG
TACAAGCTCTTGGCCGCGGGTGGGAAGATGACGAATGTGTGGTCACGCGATTAGGCGAAGAAACTGTTCAGTTGCGGCTT
CTGCGCTGGGATGGCGGACAACTGAACCTTTGGGCGGACGGCCCCGGCATGGCCGCTGCCTGCCAGCGCTCAGAAGTTCG
TGTAAAGAAGGGAAAAGTTACGCCCTCCGCACTCCCTCCGGATGTAGTTGCCCAACTTGCCGCGCTCATGAAACGCATGC
CGGATAAGGGCAAGTGGGCCGTACCGCTGGTACTTCGCAAAGCTGGCGAAACATGGATCGGCTGGGCAGAACAAAAGGTG
AGCTACACAAGTTCGCAAGGACTTCTTTTTATGGAATAA

Upstream 100 bases:

>100_bases
CAATCCCTAGGCAGTGTTTCAAACAGCATTTCATTTTTGACACTTTGCTAAAGCATCCCCTAGCGTCAGCAGGGCCACTT
CGACACAGAGGGAACTCCGT

Downstream 100 bases:

>100_bases
CACGTTTAAAACATCCCTGAATTTTTTTCAAACCCGCTGGCATATCAGCGGGTTTTATTATACCCATCAAAATCAATAAC
CCTGTATCGGAGTATGCCAT

Product: CRISPR-associated helicase Cas3 family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 892; Mature: 891

Protein sequence:

>892_residues
MAARVSNDSYYGYWAKFDRNIAPYVHLLPYHLLDVAAVYDSLLNHTPVLQRRICRLSQLSPDTIRALLRTLAVLHDLGKF
SQIFQEQQPEARAILTDTPPTGLGGNTHHTALGQWLYSSVVRQALEDCHAVFSEDAMDTMRPLVNATFGHHGTPEQESGS
IRHFRRATEHAKAFATEAANFLLPPIEIPESEQAFRALSWLHAGLMVVADWLGSNTRWFPYHAEQMPLETYWNEIALPRA
DRAVRESGIPAAPPHPKRDFTRLLPHLPANAGPSPLQSHALYDAIRSSGPQLHIFEDMTGGGKTEAALLCAHGLMTMSEA
DGFYIALPTMATANGMYARLAQSYRALFGSDKDSAQDSPISLILAHGARNLSDLFMSGVPDANAESAIDPQSDGRAYCAT
WLADSRKKALLSPCGVGTIDQALLAVLPARHQCLRLLGLARNVLVIDEVHAYDEYTGSLLQALLRFHAALGGSAILLSAT
LTRRIRQNLAAAFCEGAGYPAPTLNVDDFPLATTADSHGMRETAFPATRRSTIHVKLTADENAMYKALLETRAAGGCACW
IRNTVDQAREAYERLREQHGVPEKDIILFHARFAMADRQHIEQRVLALFGKNSTQDDRRSKILVATQVVEQSLDLDFDQL
NSDHAPMELLIQRGGRCHRHNRNRPRGLESPRMLVLAPQARNDAPQDWYASVLGKAQFVYPVQAPLWRAAKLLEKVKQLT
LPDDARRLVESVYDDNEFAPESLQNADERYLAEALGKKDLARFNTLKLEAGYSVQALGRGWEDDECVVTRLGEETVQLRL
LRWDGGQLNLWADGPGMAAACQRSEVRVKKGKVTPSALPPDVVAQLAALMKRMPDKGKWAVPLVLRKAGETWIGWAEQKV
SYTSSQGLLFME

Sequences:

>Translated_892_residues
MAARVSNDSYYGYWAKFDRNIAPYVHLLPYHLLDVAAVYDSLLNHTPVLQRRICRLSQLSPDTIRALLRTLAVLHDLGKF
SQIFQEQQPEARAILTDTPPTGLGGNTHHTALGQWLYSSVVRQALEDCHAVFSEDAMDTMRPLVNATFGHHGTPEQESGS
IRHFRRATEHAKAFATEAANFLLPPIEIPESEQAFRALSWLHAGLMVVADWLGSNTRWFPYHAEQMPLETYWNEIALPRA
DRAVRESGIPAAPPHPKRDFTRLLPHLPANAGPSPLQSHALYDAIRSSGPQLHIFEDMTGGGKTEAALLCAHGLMTMSEA
DGFYIALPTMATANGMYARLAQSYRALFGSDKDSAQDSPISLILAHGARNLSDLFMSGVPDANAESAIDPQSDGRAYCAT
WLADSRKKALLSPCGVGTIDQALLAVLPARHQCLRLLGLARNVLVIDEVHAYDEYTGSLLQALLRFHAALGGSAILLSAT
LTRRIRQNLAAAFCEGAGYPAPTLNVDDFPLATTADSHGMRETAFPATRRSTIHVKLTADENAMYKALLETRAAGGCACW
IRNTVDQAREAYERLREQHGVPEKDIILFHARFAMADRQHIEQRVLALFGKNSTQDDRRSKILVATQVVEQSLDLDFDQL
NSDHAPMELLIQRGGRCHRHNRNRPRGLESPRMLVLAPQARNDAPQDWYASVLGKAQFVYPVQAPLWRAAKLLEKVKQLT
LPDDARRLVESVYDDNEFAPESLQNADERYLAEALGKKDLARFNTLKLEAGYSVQALGRGWEDDECVVTRLGEETVQLRL
LRWDGGQLNLWADGPGMAAACQRSEVRVKKGKVTPSALPPDVVAQLAALMKRMPDKGKWAVPLVLRKAGETWIGWAEQKV
SYTSSQGLLFME
>Mature_891_residues
AARVSNDSYYGYWAKFDRNIAPYVHLLPYHLLDVAAVYDSLLNHTPVLQRRICRLSQLSPDTIRALLRTLAVLHDLGKFS
QIFQEQQPEARAILTDTPPTGLGGNTHHTALGQWLYSSVVRQALEDCHAVFSEDAMDTMRPLVNATFGHHGTPEQESGSI
RHFRRATEHAKAFATEAANFLLPPIEIPESEQAFRALSWLHAGLMVVADWLGSNTRWFPYHAEQMPLETYWNEIALPRAD
RAVRESGIPAAPPHPKRDFTRLLPHLPANAGPSPLQSHALYDAIRSSGPQLHIFEDMTGGGKTEAALLCAHGLMTMSEAD
GFYIALPTMATANGMYARLAQSYRALFGSDKDSAQDSPISLILAHGARNLSDLFMSGVPDANAESAIDPQSDGRAYCATW
LADSRKKALLSPCGVGTIDQALLAVLPARHQCLRLLGLARNVLVIDEVHAYDEYTGSLLQALLRFHAALGGSAILLSATL
TRRIRQNLAAAFCEGAGYPAPTLNVDDFPLATTADSHGMRETAFPATRRSTIHVKLTADENAMYKALLETRAAGGCACWI
RNTVDQAREAYERLREQHGVPEKDIILFHARFAMADRQHIEQRVLALFGKNSTQDDRRSKILVATQVVEQSLDLDFDQLN
SDHAPMELLIQRGGRCHRHNRNRPRGLESPRMLVLAPQARNDAPQDWYASVLGKAQFVYPVQAPLWRAAKLLEKVKQLTL
PDDARRLVESVYDDNEFAPESLQNADERYLAEALGKKDLARFNTLKLEAGYSVQALGRGWEDDECVVTRLGEETVQLRLL
RWDGGQLNLWADGPGMAAACQRSEVRVKKGKVTPSALPPDVVAQLAALMKRMPDKGKWAVPLVLRKAGETWIGWAEQKVS
YTSSQGLLFME

Specific function: Unknown

COG id: COG1203

COG function: function code R; Predicted helicases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 helicase C-terminal domain [H]

Homologues:

Organism=Escherichia coli, GI1789119, Length=836, Percent_Identity=34.4497607655502, Blast_Score=352, Evalue=9e-98,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006483
- InterPro:   IPR014001
- InterPro:   IPR011545
- InterPro:   IPR001650
- InterPro:   IPR006474
- InterPro:   IPR014021 [H]

Pfam domain/function: PF00270 DEAD [H]

EC number: NA

Molecular weight: Translated: 98875; Mature: 98743

Theoretical pI: Translated: 6.99; Mature: 6.99

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAARVSNDSYYGYWAKFDRNIAPYVHLLPYHLLDVAAVYDSLLNHTPVLQRRICRLSQLS
CCCCCCCCCCEEEHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCC
PDTIRALLRTLAVLHDLGKFSQIFQEQQPEARAILTDTPPTGLGGNTHHTALGQWLYSSV
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHH
VRQALEDCHAVFSEDAMDTMRPLVNATFGHHGTPEQESGSIRHFRRATEHAKAFATEAAN
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
FLLPPIEIPESEQAFRALSWLHAGLMVVADWLGSNTRWFPYHAEQMPLETYWNEIALPRA
HCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCCCHHHHHHHHCCCCH
DRAVRESGIPAAPPHPKRDFTRLLPHLPANAGPSPLQSHALYDAIRSSGPQLHIFEDMTG
HHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCC
GGKTEAALLCAHGLMTMSEADGFYIALPTMATANGMYARLAQSYRALFGSDKDSAQDSPI
CCCHHHHHHHHHHHHHHCCCCCEEEEECCHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCE
SLILAHGARNLSDLFMSGVPDANAESAIDPQSDGRAYCATWLADSRKKALLSPCGVGTID
EEEEECCCCCHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHCCHHHHHHCCCCCCHHH
QALLAVLPARHQCLRLLGLARNVLVIDEVHAYDEYTGSLLQALLRFHAALGGSAILLSAT
HHHHHHHHHHHHHHHHHHHHCCEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
LTRRIRQNLAAAFCEGAGYPAPTLNVDDFPLATTADSHGMRETAFPATRRSTIHVKLTAD
HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCEEEEEEECC
ENAMYKALLETRAAGGCACWIRNTVDQAREAYERLREQHGVPEKDIILFHARFAMADRQH
CHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEHHHHHHHHHH
IEQRVLALFGKNSTQDDRRSKILVATQVVEQSLDLDFDQLNSDHAPMELLIQRGGRCHRH
HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHCCCCCCHHHHHHHCCCCHHCC
NRNRPRGLESPRMLVLAPQARNDAPQDWYASVLGKAQFVYPVQAPLWRAAKLLEKVKQLT
CCCCCCCCCCCCEEEECCCCCCCCCHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHCC
LPDDARRLVESVYDDNEFAPESLQNADERYLAEALGKKDLARFNTLKLEAGYSVQALGRG
CCHHHHHHHHHHHCCCCCCCHHHHCHHHHHHHHHHCHHHHHHHCEEEEECCCCHHHHCCC
WEDDECVVTRLGEETVQLRLLRWDGGQLNLWADGPGMAAACQRSEVRVKKGKVTPSALPP
CCCCCHHHHHHCCCEEEEEEEEECCCEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCH
DVVAQLAALMKRMPDKGKWAVPLVLRKAGETWIGWAEQKVSYTSSQGLLFME
HHHHHHHHHHHHCCCCCCEEHHHHHHHCCCCHHCHHHHHHCCCCCCCCEEEC
>Mature Secondary Structure 
AARVSNDSYYGYWAKFDRNIAPYVHLLPYHLLDVAAVYDSLLNHTPVLQRRICRLSQLS
CCCCCCCCCEEEHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCC
PDTIRALLRTLAVLHDLGKFSQIFQEQQPEARAILTDTPPTGLGGNTHHTALGQWLYSSV
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHH
VRQALEDCHAVFSEDAMDTMRPLVNATFGHHGTPEQESGSIRHFRRATEHAKAFATEAAN
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
FLLPPIEIPESEQAFRALSWLHAGLMVVADWLGSNTRWFPYHAEQMPLETYWNEIALPRA
HCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCCCCCCHHHHHHHHCCCCH
DRAVRESGIPAAPPHPKRDFTRLLPHLPANAGPSPLQSHALYDAIRSSGPQLHIFEDMTG
HHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCC
GGKTEAALLCAHGLMTMSEADGFYIALPTMATANGMYARLAQSYRALFGSDKDSAQDSPI
CCCHHHHHHHHHHHHHHCCCCCEEEEECCHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCE
SLILAHGARNLSDLFMSGVPDANAESAIDPQSDGRAYCATWLADSRKKALLSPCGVGTID
EEEEECCCCCHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHCCHHHHHHCCCCCCHHH
QALLAVLPARHQCLRLLGLARNVLVIDEVHAYDEYTGSLLQALLRFHAALGGSAILLSAT
HHHHHHHHHHHHHHHHHHHHCCEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
LTRRIRQNLAAAFCEGAGYPAPTLNVDDFPLATTADSHGMRETAFPATRRSTIHVKLTAD
HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCEEEEEEECC
ENAMYKALLETRAAGGCACWIRNTVDQAREAYERLREQHGVPEKDIILFHARFAMADRQH
CHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEHHHHHHHHHH
IEQRVLALFGKNSTQDDRRSKILVATQVVEQSLDLDFDQLNSDHAPMELLIQRGGRCHRH
HHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHCCCCCCHHHHHHHCCCCHHCC
NRNRPRGLESPRMLVLAPQARNDAPQDWYASVLGKAQFVYPVQAPLWRAAKLLEKVKQLT
CCCCCCCCCCCCEEEECCCCCCCCCHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHCC
LPDDARRLVESVYDDNEFAPESLQNADERYLAEALGKKDLARFNTLKLEAGYSVQALGRG
CCHHHHHHHHHHHCCCCCCCHHHHCHHHHHHHHHHCHHHHHHHCEEEEECCCCHHHHCCC
WEDDECVVTRLGEETVQLRLLRWDGGQLNLWADGPGMAAACQRSEVRVKKGKVTPSALPP
CCCCCHHHHHHCCCEEEEEEEEECCCEEEEEECCCCHHHHHHHHHHHHHCCCCCCCCCCH
DVVAQLAALMKRMPDKGKWAVPLVLRKAGETWIGWAEQKVSYTSSQGLLFME
HHHHHHHHHHHHCCCCCCEEHHHHHHHCCCCHHCHHHHHHCCCCCCCCEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503; 2005873; 7984428 [H]