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The map label for this gene is ygcJ [H]

Identifier: 78355909

GI number: 78355909

Start: 888895

End: 890025

Strand: Reverse

Name: ygcJ [H]

Synonym: Dde_0862

Alternate gene names: 78355909

Gene position: 890025-888895 (Counterclockwise)

Preceding gene: 78355910

Following gene: 78355908

Centisome position: 23.86

GC content: 56.59

Gene sequence:

>1131_bases
ATGAGCGATTTCATCCAGCTGCACGTATTGACAAGCTACCCTGCCTCCAACCTTAACCGCGATGACCTCGGCCGTCCCAA
AAGTGTTGTCATGGGCAATACAACCCGTCTGCGCATTTCCTCTCAGTGCCTCAAGCGGGCATGGCGCACTTCGGATATAT
TCCAGAATATCGGGGCTGAACATGTAGGCATCCGCACCAGAGAAATGGGACGTTATATTTTTAAGGCTCTGACCGAGGGC
TGCACATTGAACGAAGCGCTGGCCGGAAAAGCCGGCGGCAGCCTCGCCACGGTCAAAGAAAAGGACGCAGTGGCTATCGC
CCGCGCCATGGCGGGTGTGTTCGGAAAGCTGAAGGCGGAATACAAGCCCAAAAAAGATGATAAGGCCGAAGCCGCACGCA
CGCAACGGGAAGAATCACTTGAGATAGAACAGCTTGCCCACTTTTCGCAGGAAGAGGTGAATGCCGTCGCCGCTCTGACG
GAAACCTGCAGAACCGGCGGCAAAGCCCCCGCCAAAGAGCAGCTTGCCCTGCTCCGCAAAGACATCAAAACGGTGGACAT
AGCCATGTTCGGCCGCATGCTGGCAGCTGAAAAGGCATTCAACGTGGAAGCAGCTGTGCAGGTGGCACACGCCATGACCG
TGCACCCCGTTACTGTGGACGACGACTTCTTCACCGCGGTGGATGATCTGAATCGCGACGACAGCGGCGCAGGCCATATG
GGCGTTTCGGAATTCGGTGCCGGAATTTTCTATCTGTACCTGTGCATAGACCGCGGGCTGCTCAAGCACAACCTGCAGGG
CGACACAGAGCTGACCAACCGCGCGCTGGCTGCCCTGTTGCAGGCCGTGGCACAGGTCAGCCCCTCGGGCAAACAAAACA
GCTTCGGTTCCAGAGCCTATGCCTCGTACATTCTTGCAGAACGTGGCAATGACCAGCCGCGAAACCTTTCCGTCGCATAT
CTGGACGGTGTGAGCAAGAAACAGAACATCATGCAGGAAGCCATAAAGCTGCTTACCGAAACCCGCGCAAACATGAACAC
CGTGTACGGACAGACATTCGAATCCGCAGAGATCAACACGCTCACCGGCAGCGGCAGCCTCAAAGAACTTGCTGCCTTCA
TCGCGGGTTAG

Upstream 100 bases:

>100_bases
TTGTGGAAAGCGGCTTCTGGTGGACGGATGCCACCCGCAAAAACTGGGCACTCAACTATTACCTTAATCCCGAACAGCGC
TAGGGCGCAGGAGACATATC

Downstream 100 bases:

>100_bases
TGCCATGGCACAGTATCTGACCTTTCAAATTTACGGCCCGCTGCAGGCATACGGCACCGTGGCTGTAGGGGAAATCCGCC
CCACCAGCACCATGCCCACA

Product: CRISPR-associated Cse4 family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 376; Mature: 375

Protein sequence:

>376_residues
MSDFIQLHVLTSYPASNLNRDDLGRPKSVVMGNTTRLRISSQCLKRAWRTSDIFQNIGAEHVGIRTREMGRYIFKALTEG
CTLNEALAGKAGGSLATVKEKDAVAIARAMAGVFGKLKAEYKPKKDDKAEAARTQREESLEIEQLAHFSQEEVNAVAALT
ETCRTGGKAPAKEQLALLRKDIKTVDIAMFGRMLAAEKAFNVEAAVQVAHAMTVHPVTVDDDFFTAVDDLNRDDSGAGHM
GVSEFGAGIFYLYLCIDRGLLKHNLQGDTELTNRALAALLQAVAQVSPSGKQNSFGSRAYASYILAERGNDQPRNLSVAY
LDGVSKKQNIMQEAIKLLTETRANMNTVYGQTFESAEINTLTGSGSLKELAAFIAG

Sequences:

>Translated_376_residues
MSDFIQLHVLTSYPASNLNRDDLGRPKSVVMGNTTRLRISSQCLKRAWRTSDIFQNIGAEHVGIRTREMGRYIFKALTEG
CTLNEALAGKAGGSLATVKEKDAVAIARAMAGVFGKLKAEYKPKKDDKAEAARTQREESLEIEQLAHFSQEEVNAVAALT
ETCRTGGKAPAKEQLALLRKDIKTVDIAMFGRMLAAEKAFNVEAAVQVAHAMTVHPVTVDDDFFTAVDDLNRDDSGAGHM
GVSEFGAGIFYLYLCIDRGLLKHNLQGDTELTNRALAALLQAVAQVSPSGKQNSFGSRAYASYILAERGNDQPRNLSVAY
LDGVSKKQNIMQEAIKLLTETRANMNTVYGQTFESAEINTLTGSGSLKELAAFIAG
>Mature_375_residues
SDFIQLHVLTSYPASNLNRDDLGRPKSVVMGNTTRLRISSQCLKRAWRTSDIFQNIGAEHVGIRTREMGRYIFKALTEGC
TLNEALAGKAGGSLATVKEKDAVAIARAMAGVFGKLKAEYKPKKDDKAEAARTQREESLEIEQLAHFSQEEVNAVAALTE
TCRTGGKAPAKEQLALLRKDIKTVDIAMFGRMLAAEKAFNVEAAVQVAHAMTVHPVTVDDDFFTAVDDLNRDDSGAGHMG
VSEFGAGIFYLYLCIDRGLLKHNLQGDTELTNRALAALLQAVAQVSPSGKQNSFGSRAYASYILAERGNDQPRNLSVAYL
DGVSKKQNIMQEAIKLLTETRANMNTVYGQTFESAEINTLTGSGSLKELAAFIAG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1789116, Length=356, Percent_Identity=30.0561797752809, Blast_Score=127, Evalue=1e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010148 [H]

Pfam domain/function: PF09344 Cas_CT1975 [H]

EC number: NA

Molecular weight: Translated: 40830; Mature: 40699

Theoretical pI: Translated: 7.58; Mature: 7.58

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDFIQLHVLTSYPASNLNRDDLGRPKSVVMGNTTRLRISSQCLKRAWRTSDIFQNIGAE
CCCEEEEEEEECCCCCCCCHHHCCCCCEEEECCCEEEEHHHHHHHHHHHHHHHHHHCCCH
HVGIRTREMGRYIFKALTEGCTLNEALAGKAGGSLATVKEKDAVAIARAMAGVFGKLKAE
HCCCHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCEEEECHHHHHHHHHHHHHHHHHHHCC
YKPKKDDKAEAARTQREESLEIEQLAHFSQEEVNAVAALTETCRTGGKAPAKEQLALLRK
CCCCCCCHHHHHHHHHHHCCCHHHHHHCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
DIKTVDIAMFGRMLAAEKAFNVEAAVQVAHAMTVHPVTVDDDFFTAVDDLNRDDSGAGHM
HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHEEEEEEECCHHHHHHHHCCCCCCCCCCC
GVSEFGAGIFYLYLCIDRGLLKHNLQGDTELTNRALAALLQAVAQVSPSGKQNSFGSRAY
CHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHH
ASYILAERGNDQPRNLSVAYLDGVSKKQNIMQEAIKLLTETRANMNTVYGQTFESAEINT
HHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEE
LTGSGSLKELAAFIAG
EECCCCHHHHHHHHCC
>Mature Secondary Structure 
SDFIQLHVLTSYPASNLNRDDLGRPKSVVMGNTTRLRISSQCLKRAWRTSDIFQNIGAE
CCEEEEEEEECCCCCCCCHHHCCCCCEEEECCCEEEEHHHHHHHHHHHHHHHHHHCCCH
HVGIRTREMGRYIFKALTEGCTLNEALAGKAGGSLATVKEKDAVAIARAMAGVFGKLKAE
HCCCHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCEEEECHHHHHHHHHHHHHHHHHHHCC
YKPKKDDKAEAARTQREESLEIEQLAHFSQEEVNAVAALTETCRTGGKAPAKEQLALLRK
CCCCCCCHHHHHHHHHHHCCCHHHHHHCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
DIKTVDIAMFGRMLAAEKAFNVEAAVQVAHAMTVHPVTVDDDFFTAVDDLNRDDSGAGHM
HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHEEEEEEECCHHHHHHHHCCCCCCCCCCC
GVSEFGAGIFYLYLCIDRGLLKHNLQGDTELTNRALAALLQAVAQVSPSGKQNSFGSRAY
CHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHH
ASYILAERGNDQPRNLSVAYLDGVSKKQNIMQEAIKLLTETRANMNTVYGQTFESAEINT
HHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEE
LTGSGSLKELAAFIAG
EECCCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]