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The map label for this gene is ygcI [H]

Identifier: 78355908

GI number: 78355908

Start: 888153

End: 888890

Strand: Reverse

Name: ygcI [H]

Synonym: Dde_0861

Alternate gene names: 78355908

Gene position: 888890-888153 (Counterclockwise)

Preceding gene: 78355909

Following gene: 78355907

Centisome position: 23.83

GC content: 60.7

Gene sequence:

>738_bases
ATGGCACAGTATCTGACCTTTCAAATTTACGGCCCGCTGCAGGCATACGGCACCGTGGCTGTAGGGGAAATCCGCCCCAC
CAGCACCATGCCCACACGGTCTGCCGTTCTCGGGATACTGGCCGCCGCCATAGGCATCAGGCGGGACGAAGAAACCCGTC
TTGCCGAACTGCGGGACGGATACCGTGTAGCGGTGCGGGAAGATGCTCCGGGCAAGGTTATGCTGGACTACCATACCATA
CAGACCCCCGGCGCCAGAGGAAAACGTCAGCTCCATTGCCGGCGTGATGAGTTGCTGCTCACGGAGCCGAATACCATTCT
CTCCCGCCGGGAATATCTCATGGATGCCTTGTTCACAGTCTGCCTGTGGCAGGCAAACCATACGGTCCCCTACTCGCTGC
AAGAAATTGCCAGAGCGCTCAGAAGTCCACGCTGGACGATCGGGCTGGGGCGCAAGTCCTGCCCTCCCGCCCTGCCGTTC
GCCCCCAAGATTACAGACCATACCACGCCGCAGGAGGCTGTAGCGGCCTATCCTGCTGACAAACTGGTATCCGCCGGTCT
GCGCAGTCCACAGGTCATGCGCATGTTGCTTGATACAGAAGGGCCGCATACGGACACGGAGACAACCGTGCGGGACGTTC
CCCTGCACCACGGACGCAGACAGTTTGCCGAGCGCAAGGTGCGGGAACTGCTGGTGCGCAAGGCTGCAACTGACGAGGTG
CCCCATGTGGATGAGTAA

Upstream 100 bases:

>100_bases
AACACCGTGTACGGACAGACATTCGAATCCGCAGAGATCAACACGCTCACCGGCAGCGGCAGCCTCAAAGAACTTGCTGC
CTTCATCGCGGGTTAGTGCC

Downstream 100 bases:

>100_bases
ACTCGTGCTTGATCCCCGCCGCGCTGTTGGAAAAAACCTGTATGACACGCACAGGCTTCTCTGGAACCTGTTTGCGGATG
CACCGGACAGAACGCGGGAC

Product: CRISPR-associated Cas5e family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 245; Mature: 244

Protein sequence:

>245_residues
MAQYLTFQIYGPLQAYGTVAVGEIRPTSTMPTRSAVLGILAAAIGIRRDEETRLAELRDGYRVAVREDAPGKVMLDYHTI
QTPGARGKRQLHCRRDELLLTEPNTILSRREYLMDALFTVCLWQANHTVPYSLQEIARALRSPRWTIGLGRKSCPPALPF
APKITDHTTPQEAVAAYPADKLVSAGLRSPQVMRMLLDTEGPHTDTETTVRDVPLHHGRRQFAERKVRELLVRKAATDEV
PHVDE

Sequences:

>Translated_245_residues
MAQYLTFQIYGPLQAYGTVAVGEIRPTSTMPTRSAVLGILAAAIGIRRDEETRLAELRDGYRVAVREDAPGKVMLDYHTI
QTPGARGKRQLHCRRDELLLTEPNTILSRREYLMDALFTVCLWQANHTVPYSLQEIARALRSPRWTIGLGRKSCPPALPF
APKITDHTTPQEAVAAYPADKLVSAGLRSPQVMRMLLDTEGPHTDTETTVRDVPLHHGRRQFAERKVRELLVRKAATDEV
PHVDE
>Mature_244_residues
AQYLTFQIYGPLQAYGTVAVGEIRPTSTMPTRSAVLGILAAAIGIRRDEETRLAELRDGYRVAVREDAPGKVMLDYHTIQ
TPGARGKRQLHCRRDELLLTEPNTILSRREYLMDALFTVCLWQANHTVPYSLQEIARALRSPRWTIGLGRKSCPPALPFA
PKITDHTTPQEAVAAYPADKLVSAGLRSPQVMRMLLDTEGPHTDTETTVRDVPLHHGRRQFAERKVRELLVRKAATDEVP
HVDE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87082154, Length=239, Percent_Identity=35.1464435146443, Blast_Score=95, Evalue=4e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR021124
- InterPro:   IPR013422
- InterPro:   IPR010147 [H]

Pfam domain/function: PF09704 Cas_Cas5d [H]

EC number: NA

Molecular weight: Translated: 27512; Mature: 27381

Theoretical pI: Translated: 9.10; Mature: 9.10

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAQYLTFQIYGPLQAYGTVAVGEIRPTSTMPTRSAVLGILAAAIGIRRDEETRLAELRDG
CCCEEEEEEECCHHHHCCEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHCCC
YRVAVREDAPGKVMLDYHTIQTPGARGKRQLHCRRDELLLTEPNTILSRREYLMDALFTV
EEEEEECCCCCEEEEEEEEECCCCCCCCHHHEECCCCEEEECCHHHHHHHHHHHHHHHHH
CLWQANHTVPYSLQEIARALRSPRWTIGLGRKSCPPALPFAPKITDHTTPQEAVAAYPAD
HHHCCCCCCCCCHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHCCHH
KLVSAGLRSPQVMRMLLDTEGPHTDTETTVRDVPLHHGRRQFAERKVRELLVRKAATDEV
HHHHHCCCCHHHHHHHHHCCCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCC
PHVDE
CCCCC
>Mature Secondary Structure 
AQYLTFQIYGPLQAYGTVAVGEIRPTSTMPTRSAVLGILAAAIGIRRDEETRLAELRDG
CCEEEEEEECCHHHHCCEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHCCC
YRVAVREDAPGKVMLDYHTIQTPGARGKRQLHCRRDELLLTEPNTILSRREYLMDALFTV
EEEEEECCCCCEEEEEEEEECCCCCCCCHHHEECCCCEEEECCHHHHHHHHHHHHHHHHH
CLWQANHTVPYSLQEIARALRSPRWTIGLGRKSCPPALPFAPKITDHTTPQEAVAAYPAD
HHHCCCCCCCCCHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHCCHH
KLVSAGLRSPQVMRMLLDTEGPHTDTETTVRDVPLHHGRRQFAERKVRELLVRKAATDEV
HHHHHCCCCHHHHHHHHHCCCCCCCCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCC
PHVDE
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]