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The map label for this gene is ygcH [H]

Identifier: 78355907

GI number: 78355907

Start: 887507

End: 888166

Strand: Reverse

Name: ygcH [H]

Synonym: Dde_0860

Alternate gene names: 78355907

Gene position: 888166-887507 (Counterclockwise)

Preceding gene: 78355908

Following gene: 78355906

Centisome position: 23.81

GC content: 56.06

Gene sequence:

>660_bases
ATGTGGATGAGTAAACTCGTGCTTGATCCCCGCCGCGCTGTTGGAAAAAACCTGTATGACACGCACAGGCTTCTCTGGAA
CCTGTTTGCGGATGCACCGGACAGAACGCGGGACTTTCTGTTCCGCGAACAGGACGAGCCTTACACCTTCCTCACGGTAT
CCCGGCGTCAACCGGAAGATACGACGGGGTGGTGGTCCATTCAGATAAAGCCCTATGCACCAAAGCTGCAAGCCGGAGAT
GCCGTTGCTTTTTCCCTGCGAGTCAATGCGGTGGTTAAACGTAATGAAAACGGCAAACAACGCAGGTTCGATATTGTGCA
GGATGCCTGCCTGCGCATGAAGGAACTAAATCAGAATGCGCAGATGCCCACCAGAGCGGAAATTGCACAGGAAGCAGGAA
CGCGCTGGTTGCTGGCACGGCAGCAGGCGTTGGGGCTGTCCATAGAATCGGCCGCCATTTTGGTGGAAGGCTGCAAGGTG
GAACGTTTTGTCAAACGCGCCACGCGCGATACCCGGTCCGGTGTCGTAAGCTTGGGCATCATGGATTTGCAGGGCACTGC
AGAGGTGAAAGACCCCCAGCTGCTTCTGCAGGCGTTGTTTCAAGGTGTGGGACCAGCCAAAGGCTTCGGTTGCGGCCTGC
TGCTCATACGCAGGGTATGA

Upstream 100 bases:

>100_bases
ACCGTGCGGGACGTTCCCCTGCACCACGGACGCAGACAGTTTGCCGAGCGCAAGGTGCGGGAACTGCTGGTGCGCAAGGC
TGCAACTGACGAGGTGCCCC

Downstream 100 bases:

>100_bases
CCATGCTGCCCGGTTTGCGTCCCATCCCATCAAGGAGAGGCTGTCTATGGTCTTTCTGGAAAAAGGCAATATCGACGTAC
TGGACGGCGCATTTGTACTT

Product: CRISPR-associated Cse3 family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 219; Mature: 219

Protein sequence:

>219_residues
MWMSKLVLDPRRAVGKNLYDTHRLLWNLFADAPDRTRDFLFREQDEPYTFLTVSRRQPEDTTGWWSIQIKPYAPKLQAGD
AVAFSLRVNAVVKRNENGKQRRFDIVQDACLRMKELNQNAQMPTRAEIAQEAGTRWLLARQQALGLSIESAAILVEGCKV
ERFVKRATRDTRSGVVSLGIMDLQGTAEVKDPQLLLQALFQGVGPAKGFGCGLLLIRRV

Sequences:

>Translated_219_residues
MWMSKLVLDPRRAVGKNLYDTHRLLWNLFADAPDRTRDFLFREQDEPYTFLTVSRRQPEDTTGWWSIQIKPYAPKLQAGD
AVAFSLRVNAVVKRNENGKQRRFDIVQDACLRMKELNQNAQMPTRAEIAQEAGTRWLLARQQALGLSIESAAILVEGCKV
ERFVKRATRDTRSGVVSLGIMDLQGTAEVKDPQLLLQALFQGVGPAKGFGCGLLLIRRV
>Mature_219_residues
MWMSKLVLDPRRAVGKNLYDTHRLLWNLFADAPDRTRDFLFREQDEPYTFLTVSRRQPEDTTGWWSIQIKPYAPKLQAGD
AVAFSLRVNAVVKRNENGKQRRFDIVQDACLRMKELNQNAQMPTRAEIAQEAGTRWLLARQQALGLSIESAAILVEGCKV
ERFVKRATRDTRSGVVSLGIMDLQGTAEVKDPQLLLQALFQGVGPAKGFGCGLLLIRRV

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1789114, Length=218, Percent_Identity=30.7339449541284, Blast_Score=74, Evalue=8e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010179 [H]

Pfam domain/function: PF08798 CRISPR_assoc [H]

EC number: NA

Molecular weight: Translated: 24814; Mature: 24814

Theoretical pI: Translated: 10.36; Mature: 10.36

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MWMSKLVLDPRRAVGKNLYDTHRLLWNLFADAPDRTRDFLFREQDEPYTFLTVSRRQPED
CCCHHHHCCCHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCEEEEEEECCCCCC
TTGWWSIQIKPYAPKLQAGDAVAFSLRVNAVVKRNENGKQRRFDIVQDACLRMKELNQNA
CCCEEEEEEECCCCCCCCCCEEEEEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCC
QMPTRAEIAQEAGTRWLLARQQALGLSIESAAILVEGCKVERFVKRATRDTRSGVVSLGI
CCCHHHHHHHHCCCCEEEHHHHHHCCCCCHHEEEEECCHHHHHHHHHHHHHHCCEEEEEE
MDLQGTAEVKDPQLLLQALFQGVGPAKGFGCGLLLIRRV
EECCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHEEECC
>Mature Secondary Structure
MWMSKLVLDPRRAVGKNLYDTHRLLWNLFADAPDRTRDFLFREQDEPYTFLTVSRRQPED
CCCHHHHCCCHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCEEEEEEECCCCCC
TTGWWSIQIKPYAPKLQAGDAVAFSLRVNAVVKRNENGKQRRFDIVQDACLRMKELNQNA
CCCEEEEEEECCCCCCCCCCEEEEEEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCC
QMPTRAEIAQEAGTRWLLARQQALGLSIESAAILVEGCKVERFVKRATRDTRSGVVSLGI
CCCHHHHHHHHCCCCEEEHHHHHHCCCCCHHEEEEECCHHHHHHHHHHHHHHCCEEEEEE
MDLQGTAEVKDPQLLLQALFQGVGPAKGFGCGLLLIRRV
EECCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]