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The map label for this gene is ygbT [H]

Identifier: 78355905

GI number: 78355905

Start: 886595

End: 887362

Strand: Reverse

Name: ygbT [H]

Synonym: Dde_0858

Alternate gene names: 78355905

Gene position: 887362-886595 (Counterclockwise)

Preceding gene: 78355906

Following gene: 78355904

Centisome position: 23.79

GC content: 54.95

Gene sequence:

>768_bases
GTGACGTGTATTCTTCTGGAACCGGGTACACGCGTCAGTCATGCCGCGGTTGTTCTTGCTGCACGGTCAGGCACTCTTCT
TGTCTGGACAGGAGAAGCCGGAGTGCGGTTATACGCCTCCGGCCAACCGGGCGGAGCGCGCAGCGACAAACTGCTTTATC
AGGCGAAGCTGGCTCTGGATGATACAGCCCGCCTTAAAGTTGTTCGGCGCATGTTTGCCATGCGCTTTCAGGAACAGGCA
CCGGACAGACGCAGCGTTAACCAGTTGCGCGGTCTGGAAGGGGCGCGGGTACGGGCTCTTTATAGCCTGCTTGCCAAACA
ATATAAGGTGCCTTGGAAAGGCAGAAAATATGACCCGAAGGATTGGGAATCCGGCGACCTGCCTAACCGTTGCATAAGTG
CGGCCACAGCGTGCCTGTATGGAGTATGCGAAGCCGGAATTCTGGCCGCTGGCTATGCTCCTGCCATTGGCTTTTTACAC
ACGGGCAAACCCCAGAGCTTTGTGTATGATATAGCAGACCTGTTCAAATTCGAAACGGTAGTTCCCGTCGCCTTTCGCGT
GGCAGCAGGTAAACCCGTTAACCCCGATCAGGCTGTCCGTCTGGCATGCAGAGATATGTTCCGCAAAACAAAGCTGTTGC
AACGCATCATCCCCACTATTGAAGAAGTGCTGGCCGCCGGTGAAATTGCCCCGCCTGAAATTGAAGGAGTTGTTACGCCG
GCAATACAGGAAAAAGAGGGTATAGGCGATGACGGTCATCGTGGTTGA

Upstream 100 bases:

>100_bases
CTATGGTCTTTCTGGAAAAAGGCAATATCGACGTACTGGACGGCGCATTTGTACTTGTTGATATGTTACCGGAGTACGCA
CACACATTCCTGTCGGCTCT

Downstream 100 bases:

>100_bases
AAACGTGCCTCCACGACTTCGCGGGCGCTTGGCAGTCTGGATGCTTGAAATCAGAGCAGGAGTCTATGTGGGTTCTTTTT
CTGTCAAAGTTCGCGAAATG

Product: CRISPR-associated Cas1 family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 255; Mature: 254

Protein sequence:

>255_residues
MTCILLEPGTRVSHAAVVLAARSGTLLVWTGEAGVRLYASGQPGGARSDKLLYQAKLALDDTARLKVVRRMFAMRFQEQA
PDRRSVNQLRGLEGARVRALYSLLAKQYKVPWKGRKYDPKDWESGDLPNRCISAATACLYGVCEAGILAAGYAPAIGFLH
TGKPQSFVYDIADLFKFETVVPVAFRVAAGKPVNPDQAVRLACRDMFRKTKLLQRIIPTIEEVLAAGEIAPPEIEGVVTP
AIQEKEGIGDDGHRG

Sequences:

>Translated_255_residues
MTCILLEPGTRVSHAAVVLAARSGTLLVWTGEAGVRLYASGQPGGARSDKLLYQAKLALDDTARLKVVRRMFAMRFQEQA
PDRRSVNQLRGLEGARVRALYSLLAKQYKVPWKGRKYDPKDWESGDLPNRCISAATACLYGVCEAGILAAGYAPAIGFLH
TGKPQSFVYDIADLFKFETVVPVAFRVAAGKPVNPDQAVRLACRDMFRKTKLLQRIIPTIEEVLAAGEIAPPEIEGVVTP
AIQEKEGIGDDGHRG
>Mature_254_residues
TCILLEPGTRVSHAAVVLAARSGTLLVWTGEAGVRLYASGQPGGARSDKLLYQAKLALDDTARLKVVRRMFAMRFQEQAP
DRRSVNQLRGLEGARVRALYSLLAKQYKVPWKGRKYDPKDWESGDLPNRCISAATACLYGVCEAGILAAGYAPAIGFLHT
GKPQSFVYDIADLFKFETVVPVAFRVAAGKPVNPDQAVRLACRDMFRKTKLLQRIIPTIEEVLAAGEIAPPEIEGVVTPA
IQEKEGIGDDGHRG

Specific function: Unknown

COG id: COG1518

COG function: function code L; Uncharacterized protein predicted to be involved in DNA repair

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1789113, Length=255, Percent_Identity=71.3725490196078, Blast_Score=364, Evalue=1e-102,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002729
- InterPro:   IPR019851 [H]

Pfam domain/function: PF01867 DUF48 [H]

EC number: NA

Molecular weight: Translated: 27793; Mature: 27661

Theoretical pI: Translated: 9.55; Mature: 9.55

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTCILLEPGTRVSHAAVVLAARSGTLLVWTGEAGVRLYASGQPGGARSDKLLYQAKLALD
CEEEEECCCCCCCCEEEEEEECCCEEEEEECCCCEEEEECCCCCCCCCCHHHHHHHHHCC
DTARLKVVRRMFAMRFQEQAPDRRSVNQLRGLEGARVRALYSLLAKQYKVPWKGRKYDPK
HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCC
DWESGDLPNRCISAATACLYGVCEAGILAAGYAPAIGFLHTGKPQSFVYDIADLFKFETV
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHEECCCCHHHHHHHHHHHHHHHH
VPVAFRVAAGKPVNPDQAVRLACRDMFRKTKLLQRIIPTIEEVLAAGEIAPPEIEGVVTP
HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
AIQEKEGIGDDGHRG
CHHHHCCCCCCCCCC
>Mature Secondary Structure 
TCILLEPGTRVSHAAVVLAARSGTLLVWTGEAGVRLYASGQPGGARSDKLLYQAKLALD
EEEEECCCCCCCCEEEEEEECCCEEEEEECCCCEEEEECCCCCCCCCCHHHHHHHHHCC
DTARLKVVRRMFAMRFQEQAPDRRSVNQLRGLEGARVRALYSLLAKQYKVPWKGRKYDPK
HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCCCCC
DWESGDLPNRCISAATACLYGVCEAGILAAGYAPAIGFLHTGKPQSFVYDIADLFKFETV
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHEECCCCHHHHHHHHHHHHHHHH
VPVAFRVAAGKPVNPDQAVRLACRDMFRKTKLLQRIIPTIEEVLAAGEIAPPEIEGVVTP
HHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
AIQEKEGIGDDGHRG
CHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]