| Definition | Desulfovibrio desulfuricans subsp. desulfuricans str. G20 chromosome, complete genome. |
|---|---|
| Accession | NC_007519 |
| Length | 3,730,232 |
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The map label for this gene is barA [H]
Identifier: 78355582
GI number: 78355582
Start: 543099
End: 545639
Strand: Reverse
Name: barA [H]
Synonym: Dde_0535
Alternate gene names: 78355582
Gene position: 545639-543099 (Counterclockwise)
Preceding gene: 78355583
Following gene: 78355580
Centisome position: 14.63
GC content: 60.96
Gene sequence:
>2541_bases ATGAAACCAGCTCTTCTCGGCAACCATGCTCCCCGCGGCGTCATTCTCGCCCTGCAGCTGATTGTTCTCGCTCTGCTCTC AGGCCTGTTCGTCACCGTCTATTCGCAAAAAGACAATCATCTGTCCCTGGCGCGTATCAAGCTGCAGTCACAGGCCACCA TACTGGGTGACAGGCTGGCCGCCACGCTGGGCGGCATAGATCTGGTGCTGCTTAATGCCCAGAACACGGCGGCACAGCTG CTGACCGCCCATGCCGCGGCACCGTCGGAGACAATCCGGCGCCTGCACCTGCCCAACTCCGCCCTGCTGCATCCCGGCGT GGCTGATATTTTTCTGTTTGACGCACAGGGCACGCTGGTGGCCCGCCATTCAGGTGACAGGTACAGCAAACCGCCGGACG TGACAGGGCTGCTCAAACGCCATCGCGATCAGTGGCACGACTTTTTCCTTGAACTGCAAGCCGAAGACTCCGCCGCAGCC GCGGAACATAAACCCGGCATTCTCATCAGCCGCCGCATGCTGGACGCCTCCGGCGCCTTTGCCGGCGTGCTCACTGCCAG CGTATACCCCGCAGCGCTGTATGACCCGTATCAGGAAAGCAGTTTTTTTGACATCGACACTGTGCTGCTGCTTAACCACG ACATGCAGATAATCGCCTGCTGGCCGGCGCGGGCCGACCTGCACAGCGGCACCGCGCTGGAAGAAACCGCCGTGTTTGCG GGCACGGAAGACGAACTTTCGGGCGGCGGGCTGCGCGAGGCGCAAACCGCCGCCGATCTCATCGCAGCCTATCAGCTGCC CCACCTGCCGCTGCACATTGCTGCACTGCGCGATAAAAAACGGGTGCTCGGGCCGTGGCACAAAAGCCTCATGCGTACCA TGCTTGCAGCGCTGGCGCTTCTTACCCTTACCGCCGCACTGGCATATACAGGCATGCGGCAGCACCACAAACGGCGTAAT GCCGAAGACGCCCTGCAGCAGAGCGAACAGCTGTACCGTTCGCTGGCCGAAAACTACCCCAACGGAGTCCTGCTGCTTTT TGACGGGCAGGGCATCATACGCAAAGCTGACGGCCGTCAGATGGAAAGCATGGGGCTGAACAAACAGCATGCCGAAGGCC GCCGCCCGCACGAAATCCTGCCGCCCGCCGCGGGACTAAATCTGGCGGCGCACCATGCCGTGGCGCTGCGGGGACGTCCC GTGCATTTCACCCTTGTGATACGGGGCCGCATTTATATGGGACACAGTCTGCCTTTTTCATGCGAAACCCATGTCAGCGG CGGCATGACCGTACTGGAAGACATAACCGAACTGCAGCAGACGCAGGCCCGGCTGCGCGAAAGCCAGACCATGCTCAGTG AAGCACAGCGGCTGGCCAGAATAGGGCACTTTGACATGCAGTTTATGACACTGCGCACCTACTGCTCGCCCGAGCTGCTG CAGATGGCCGGACTGCCGCGCGATTTTGACGTATCAAAGGGCAGCGGCCTGCTTGAACACCTTGCACCGGCAGTGCCGCC CATATTCATGGCCATGCTGCAATCGCCCCTGCACGAATCCATCAGCTACAAAGAAGCAGGCATACCCTACCGCGCCATCA ACGGATCGGCAGGGTTCGGCATGCTGCGGGTAAAACTGATCAGAGATGCTTCCGGCTCGCCCCTGCGCCTTTCCGGCACG TTTCAGGACATAACCGAGGAACACAACACCCGCATGGCGCTGCTGCAGAGCGAAGCACGCTACCGGGCGCTTTCCGCCAA TCTGCCCAATGCCGCCGTCTGTCTTTTTGACAGCGAGCTGCGGCTGCTGATTGCAGACGGGCAGCGGGCGGACATGCTGG GCATGTCGGGCGACACCCCCGCGGGTACACGGCTTTCGGCAGTGATGCCTCAGGCTCTCACCGTTGTTCTGGAACCGCTG TGCCGTCAGGCTGTGGCAGGACGCCGGTCGCAGATGGAAATGGTGCACGCCGAACGCGTGCACGAGGTGACCGCCATTCC CGTTCCTGCCCATCTGGGCGGATATGACGGACTGCTGGTCATTCTTGATATCACCAAACGCAAGGCCACGGAGGCCGCAC TTAAAGACGCACTGGAAACCGCGGAGCACGCCGTACGGCTCAAATCACAGTTTGTGGCCAACATCAGCCATGAACTGCGT ACTCCCCTGAGCGGCATACTGGGCATAACCGATGTCATGCTGGGCAGACCGCAGCCTGAAGAGACCCGCAGTCATCTGGG CATGATCCGGTCCGTGGCCGAGGCTCTGCGCCTTGTGGTCAATGACATTCTGGATTTTTCACGGCTCGAGGCAGGCAAGA TGCCCCTGCATGTACGCACCTTTTCCCTGCCCGACACCGTGGAGCAGGTTCTGGCCCCGCTGCGTCTTGCAGCAGCGCAG AAAGGGCTGGCTCTCACTCTGCGGCTGGACAGCGCACTGCCTGAGGCAGTGCGGGGTGATGCGGGCAGGCTGTCGCAGAT ACTGACTAATCTTGCAGCCAATGCTGTCAAATTCACCACAAAGGGCTTTGTACGGGTGTAA
Upstream 100 bases:
>100_bases CTTTGCCACTCTGCCCGAAGAAACGCCGCACAAGCTGTCCGCAGCACAGGAACCGTAGCGGCCTGCTCTTCAGCAACACG CACGCAGCTGCAGGAACGCC
Downstream 100 bases:
>100_bases ACAGCCAATGAAAATGTCACCTTTTTGGGACGGTTTGGGACAATAAAAATGTCATGGTTTCCACCAATGGTTGTTGTTCC CCTACCAAGTCCCCGGAGTT
Product: multi-sensor signal transduction histidine kinase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 846; Mature: 846
Protein sequence:
>846_residues MKPALLGNHAPRGVILALQLIVLALLSGLFVTVYSQKDNHLSLARIKLQSQATILGDRLAATLGGIDLVLLNAQNTAAQL LTAHAAAPSETIRRLHLPNSALLHPGVADIFLFDAQGTLVARHSGDRYSKPPDVTGLLKRHRDQWHDFFLELQAEDSAAA AEHKPGILISRRMLDASGAFAGVLTASVYPAALYDPYQESSFFDIDTVLLLNHDMQIIACWPARADLHSGTALEETAVFA GTEDELSGGGLREAQTAADLIAAYQLPHLPLHIAALRDKKRVLGPWHKSLMRTMLAALALLTLTAALAYTGMRQHHKRRN AEDALQQSEQLYRSLAENYPNGVLLLFDGQGIIRKADGRQMESMGLNKQHAEGRRPHEILPPAAGLNLAAHHAVALRGRP VHFTLVIRGRIYMGHSLPFSCETHVSGGMTVLEDITELQQTQARLRESQTMLSEAQRLARIGHFDMQFMTLRTYCSPELL QMAGLPRDFDVSKGSGLLEHLAPAVPPIFMAMLQSPLHESISYKEAGIPYRAINGSAGFGMLRVKLIRDASGSPLRLSGT FQDITEEHNTRMALLQSEARYRALSANLPNAAVCLFDSELRLLIADGQRADMLGMSGDTPAGTRLSAVMPQALTVVLEPL CRQAVAGRRSQMEMVHAERVHEVTAIPVPAHLGGYDGLLVILDITKRKATEAALKDALETAEHAVRLKSQFVANISHELR TPLSGILGITDVMLGRPQPEETRSHLGMIRSVAEALRLVVNDILDFSRLEAGKMPLHVRTFSLPDTVEQVLAPLRLAAAQ KGLALTLRLDSALPEAVRGDAGRLSQILTNLAANAVKFTTKGFVRV
Sequences:
>Translated_846_residues MKPALLGNHAPRGVILALQLIVLALLSGLFVTVYSQKDNHLSLARIKLQSQATILGDRLAATLGGIDLVLLNAQNTAAQL LTAHAAAPSETIRRLHLPNSALLHPGVADIFLFDAQGTLVARHSGDRYSKPPDVTGLLKRHRDQWHDFFLELQAEDSAAA AEHKPGILISRRMLDASGAFAGVLTASVYPAALYDPYQESSFFDIDTVLLLNHDMQIIACWPARADLHSGTALEETAVFA GTEDELSGGGLREAQTAADLIAAYQLPHLPLHIAALRDKKRVLGPWHKSLMRTMLAALALLTLTAALAYTGMRQHHKRRN AEDALQQSEQLYRSLAENYPNGVLLLFDGQGIIRKADGRQMESMGLNKQHAEGRRPHEILPPAAGLNLAAHHAVALRGRP VHFTLVIRGRIYMGHSLPFSCETHVSGGMTVLEDITELQQTQARLRESQTMLSEAQRLARIGHFDMQFMTLRTYCSPELL QMAGLPRDFDVSKGSGLLEHLAPAVPPIFMAMLQSPLHESISYKEAGIPYRAINGSAGFGMLRVKLIRDASGSPLRLSGT FQDITEEHNTRMALLQSEARYRALSANLPNAAVCLFDSELRLLIADGQRADMLGMSGDTPAGTRLSAVMPQALTVVLEPL CRQAVAGRRSQMEMVHAERVHEVTAIPVPAHLGGYDGLLVILDITKRKATEAALKDALETAEHAVRLKSQFVANISHELR TPLSGILGITDVMLGRPQPEETRSHLGMIRSVAEALRLVVNDILDFSRLEAGKMPLHVRTFSLPDTVEQVLAPLRLAAAQ KGLALTLRLDSALPEAVRGDAGRLSQILTNLAANAVKFTTKGFVRV >Mature_846_residues MKPALLGNHAPRGVILALQLIVLALLSGLFVTVYSQKDNHLSLARIKLQSQATILGDRLAATLGGIDLVLLNAQNTAAQL LTAHAAAPSETIRRLHLPNSALLHPGVADIFLFDAQGTLVARHSGDRYSKPPDVTGLLKRHRDQWHDFFLELQAEDSAAA AEHKPGILISRRMLDASGAFAGVLTASVYPAALYDPYQESSFFDIDTVLLLNHDMQIIACWPARADLHSGTALEETAVFA GTEDELSGGGLREAQTAADLIAAYQLPHLPLHIAALRDKKRVLGPWHKSLMRTMLAALALLTLTAALAYTGMRQHHKRRN AEDALQQSEQLYRSLAENYPNGVLLLFDGQGIIRKADGRQMESMGLNKQHAEGRRPHEILPPAAGLNLAAHHAVALRGRP VHFTLVIRGRIYMGHSLPFSCETHVSGGMTVLEDITELQQTQARLRESQTMLSEAQRLARIGHFDMQFMTLRTYCSPELL QMAGLPRDFDVSKGSGLLEHLAPAVPPIFMAMLQSPLHESISYKEAGIPYRAINGSAGFGMLRVKLIRDASGSPLRLSGT FQDITEEHNTRMALLQSEARYRALSANLPNAAVCLFDSELRLLIADGQRADMLGMSGDTPAGTRLSAVMPQALTVVLEPL CRQAVAGRRSQMEMVHAERVHEVTAIPVPAHLGGYDGLLVILDITKRKATEAALKDALETAEHAVRLKSQFVANISHELR TPLSGILGITDVMLGRPQPEETRSHLGMIRSVAEALRLVVNDILDFSRLEAGKMPLHVRTFSLPDTVEQVLAPLRLAAAQ KGLALTLRLDSALPEAVRGDAGRLSQILTNLAANAVKFTTKGFVRV
Specific function: Member of the two-component regulatory system UvrY/BarA involved in the regulation of carbon metabolism via the CsrA/CsrB regulatory system. Phosphorylates UvrY, probably via a four-step phosphorelay [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 response regulatory domain [H]
Homologues:
Organism=Escherichia coli, GI1789149, Length=167, Percent_Identity=43.7125748502994, Blast_Score=132, Evalue=8e-32, Organism=Escherichia coli, GI145693157, Length=194, Percent_Identity=31.4432989690722, Blast_Score=108, Evalue=1e-24, Organism=Escherichia coli, GI48994928, Length=190, Percent_Identity=38.4210526315789, Blast_Score=100, Evalue=3e-22, Organism=Escherichia coli, GI1788713, Length=167, Percent_Identity=32.9341317365269, Blast_Score=88, Evalue=2e-18, Organism=Escherichia coli, GI87081816, Length=155, Percent_Identity=36.1290322580645, Blast_Score=87, Evalue=5e-18, Organism=Saccharomyces cerevisiae, GI6322044, Length=137, Percent_Identity=35.036496350365, Blast_Score=72, Evalue=3e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003594 - InterPro: IPR011006 - InterPro: IPR019247 - InterPro: IPR003660 - InterPro: IPR004358 - InterPro: IPR008207 - InterPro: IPR003661 - InterPro: IPR005467 - InterPro: IPR009082 - InterPro: IPR001789 [H]
Pfam domain/function: PF09984 DUF2222; PF00672 HAMP; PF02518 HATPase_c; PF00512 HisKA; PF01627 Hpt; PF00072 Response_reg [H]
EC number: =2.7.13.3 [H]
Molecular weight: Translated: 92162; Mature: 92162
Theoretical pI: Translated: 8.10; Mature: 8.10
Prosite motif: PS50113 PAC ; PS50109 HIS_KIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKPALLGNHAPRGVILALQLIVLALLSGLFVTVYSQKDNHLSLARIKLQSQATILGDRLA CCCCCCCCCCCHHHHHHHHHHHHHHHHHHEEEEECCCCCCEEEEEEEECCCHHHHHHHHH ATLGGIDLVLLNAQNTAAQLLTAHAAAPSETIRRLHLPNSALLHPGVADIFLFDAQGTLV HHHCCEEEEEEECCCHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCCEEEEEECCCCCEE ARHSGDRYSKPPDVTGLLKRHRDQWHDFFLELQAEDSAAAAEHKPGILISRRMLDASGAF EECCCCCCCCCCCHHHHHHHHHHHHHHEEEEEECCCCHHHHCCCCCEEEEHHHHCCCCCH AGVLTASVYPAALYDPYQESSFFDIDTVLLLNHDMQIIACWPARADLHSGTALEETAVFA HHHHHHHCCCHHHCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCCCCCCCCHHHHEEEC GTEDELSGGGLREAQTAADLIAAYQLPHLPLHIAALRDKKRVLGPWHKSLMRTMLAALAL CCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEHHHHHCCHHHCCHHHHHHHHHHHHHHHH LTLTAALAYTGMRQHHKRRNAEDALQQSEQLYRSLAENYPNGVLLLFDGQGIIRKADGRQ HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCEEECCCCCH MESMGLNKQHAEGRRPHEILPPAAGLNLAAHHAVALRGRPVHFTLVIRGRIYMGHSLPFS HHHCCCCCHHCCCCCCCCCCCCCCCCCHHHHHEEEECCCCEEEEEEEEEEEEECCCCCCC CETHVSGGMTVLEDITELQQTQARLRESQTMLSEAQRLARIGHFDMQFMTLRTYCSPELL CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHH QMAGLPRDFDVSKGSGLLEHLAPAVPPIFMAMLQSPLHESISYKEAGIPYRAINGSAGFG HHHCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHCCHHHCCCCEEEECCCCCCC MLRVKLIRDASGSPLRLSGTFQDITEEHNTRMALLQSEARYRALSANLPNAAVCLFDSEL CEEEEEEECCCCCCEEECCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCEEEEEECCE RLLIADGQRADMLGMSGDTPAGTRLSAVMPQALTVVLEPLCRQAVAGRRSQMEMVHAERV EEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH HEVTAIPVPAHLGGYDGLLVILDITKRKATEAALKDALETAEHAVRLKSQFVANISHELR HHHEEECCCHHCCCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH TPLSGILGITDVMLGRPQPEETRSHLGMIRSVAEALRLVVNDILDFSRLEAGKMPLHVRT CHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEE FSLPDTVEQVLAPLRLAAAQKGLALTLRLDSALPEAVRGDAGRLSQILTNLAANAVKFTT ECCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHCCCHHHHHHHHHHHHHHHHEEEC KGFVRV CCCEEC >Mature Secondary Structure MKPALLGNHAPRGVILALQLIVLALLSGLFVTVYSQKDNHLSLARIKLQSQATILGDRLA CCCCCCCCCCCHHHHHHHHHHHHHHHHHHEEEEECCCCCCEEEEEEEECCCHHHHHHHHH ATLGGIDLVLLNAQNTAAQLLTAHAAAPSETIRRLHLPNSALLHPGVADIFLFDAQGTLV HHHCCEEEEEEECCCHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCCEEEEEECCCCCEE ARHSGDRYSKPPDVTGLLKRHRDQWHDFFLELQAEDSAAAAEHKPGILISRRMLDASGAF EECCCCCCCCCCCHHHHHHHHHHHHHHEEEEEECCCCHHHHCCCCCEEEEHHHHCCCCCH AGVLTASVYPAALYDPYQESSFFDIDTVLLLNHDMQIIACWPARADLHSGTALEETAVFA HHHHHHHCCCHHHCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCCCCCCCCHHHHEEEC GTEDELSGGGLREAQTAADLIAAYQLPHLPLHIAALRDKKRVLGPWHKSLMRTMLAALAL CCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEHHHHHCCHHHCCHHHHHHHHHHHHHHHH LTLTAALAYTGMRQHHKRRNAEDALQQSEQLYRSLAENYPNGVLLLFDGQGIIRKADGRQ HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCEEECCCCCH MESMGLNKQHAEGRRPHEILPPAAGLNLAAHHAVALRGRPVHFTLVIRGRIYMGHSLPFS HHHCCCCCHHCCCCCCCCCCCCCCCCCHHHHHEEEECCCCEEEEEEEEEEEEECCCCCCC CETHVSGGMTVLEDITELQQTQARLRESQTMLSEAQRLARIGHFDMQFMTLRTYCSPELL CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCHHHH QMAGLPRDFDVSKGSGLLEHLAPAVPPIFMAMLQSPLHESISYKEAGIPYRAINGSAGFG HHHCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHCCHHHCCCCEEEECCCCCCC MLRVKLIRDASGSPLRLSGTFQDITEEHNTRMALLQSEARYRALSANLPNAAVCLFDSEL CEEEEEEECCCCCCEEECCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCEEEEEECCE RLLIADGQRADMLGMSGDTPAGTRLSAVMPQALTVVLEPLCRQAVAGRRSQMEMVHAERV EEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH HEVTAIPVPAHLGGYDGLLVILDITKRKATEAALKDALETAEHAVRLKSQFVANISHELR HHHEEECCCHHCCCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH TPLSGILGITDVMLGRPQPEETRSHLGMIRSVAEALRLVVNDILDFSRLEAGKMPLHVRT CHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEE FSLPDTVEQVLAPLRLAAAQKGLALTLRLDSALPEAVRGDAGRLSQILTNLAANAVKFTT ECCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHCCCHHHHHHHHHHHHHHHHEEEC KGFVRV CCCEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]