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The map label for this gene is pecT [H]

Identifier: 78355134

GI number: 78355134

Start: 80378

End: 81283

Strand: Reverse

Name: pecT [H]

Synonym: Dde_0087

Alternate gene names: 78355134

Gene position: 81283-80378 (Counterclockwise)

Preceding gene: 78355136

Following gene: 78355132

Centisome position: 2.18

GC content: 62.36

Gene sequence:

>906_bases
ATGGAACTGGAAATTGATCTGCTGCGCTGCTTTGCCGCGGTGGCAGAAGAAGGCGGCTTCACTGCGGCGGGCAGCCGTAT
TGGCCTTACACAGTCCGCCGTCAGTCAGCGCATACGCAGACTGGAAGACAGGCTAGGGCGCAGGCTTTTGGTGCGCACAA
CCCGCACCCTGAGCCTGAGCACCGAAGGAGAAATGCTGCTGCATTACGCCCAGCGCATGCTGGCCCTGCATGACGAAGCA
CTTGCGCGGCTGCGTGCTTCCAGCATCAAAGGGGCCTTGCGCATCGGATTTGTGGACTATTTCGGGCCTGACGCCATGCC
GGAAACCATCCGGCAATTTATCAGAAGCTTTCCGGACATCCACCTTGAACTCCATGCCGGGCTGGGCATGGAACTGCGCC
AGCTTTTCGACCACGGCAAACTGGATGTACTGGTGGCAGGCGATGACGGACAGCACACCGGAACCTGTATTGCCCGCGAT
ACTCTGGTCTGGGCCTGCCATACCGCATACAACTGCGCCGCAGCGCGCCCTGCGTTCATGCTTGACCACCTTGCAGCTGA
ACCGGCGGCCACCGGTGCTCCGGTACCGCTTGTGGCGCTGCCGCTGCCCTGCGTGTTTCGCAGCGCGGCCATTGCCGCAC
TGGAATCACTGCAGCGCCCATGGGAGGTGGTCTTTACCGCCACGGGCATGGCCAGCGTACTTGCTGCCGTACGCGCCGGA
CTGGGCATCACCGTGCTGCCCCGCAGCGCCCTGACCCCCGACCTGAAAATTCCCGCACCGGAGGAAGGGTTCCCCCCGCT
TCCGGCCTTTTCCACCTGCATCTACGCCAACGACAATGTCAATCTGCAAGCACTGGAGGCGCTTACCCGCCACCTGCGTC
AGCAGCTTGGTACACAGCGGGCATAG

Upstream 100 bases:

>100_bases
ACACTCCTTGTGCGACACTCAGGTAGTTGCACAAAACAGCCGGTTGTGTCTAACACCGTACAGTTTGCGCCTTACGCCCG
CGCTTATGCAGGAGGACCCT

Downstream 100 bases:

>100_bases
CCCGCAGGGCATACGGCCGCACAGCTTTACCCGCACACAAAAATCCCCTGCACCGGCACGCGGTGCAGGGGACTGCGGCA
TTGCTGCCGCACGTCATATT

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: Pectinase gene transcriptional regulator [H]

Number of amino acids: Translated: 301; Mature: 301

Protein sequence:

>301_residues
MELEIDLLRCFAAVAEEGGFTAAGSRIGLTQSAVSQRIRRLEDRLGRRLLVRTTRTLSLSTEGEMLLHYAQRMLALHDEA
LARLRASSIKGALRIGFVDYFGPDAMPETIRQFIRSFPDIHLELHAGLGMELRQLFDHGKLDVLVAGDDGQHTGTCIARD
TLVWACHTAYNCAAARPAFMLDHLAAEPAATGAPVPLVALPLPCVFRSAAIAALESLQRPWEVVFTATGMASVLAAVRAG
LGITVLPRSALTPDLKIPAPEEGFPPLPAFSTCIYANDNVNLQALEALTRHLRQQLGTQRA

Sequences:

>Translated_301_residues
MELEIDLLRCFAAVAEEGGFTAAGSRIGLTQSAVSQRIRRLEDRLGRRLLVRTTRTLSLSTEGEMLLHYAQRMLALHDEA
LARLRASSIKGALRIGFVDYFGPDAMPETIRQFIRSFPDIHLELHAGLGMELRQLFDHGKLDVLVAGDDGQHTGTCIARD
TLVWACHTAYNCAAARPAFMLDHLAAEPAATGAPVPLVALPLPCVFRSAAIAALESLQRPWEVVFTATGMASVLAAVRAG
LGITVLPRSALTPDLKIPAPEEGFPPLPAFSTCIYANDNVNLQALEALTRHLRQQLGTQRA
>Mature_301_residues
MELEIDLLRCFAAVAEEGGFTAAGSRIGLTQSAVSQRIRRLEDRLGRRLLVRTTRTLSLSTEGEMLLHYAQRMLALHDEA
LARLRASSIKGALRIGFVDYFGPDAMPETIRQFIRSFPDIHLELHAGLGMELRQLFDHGKLDVLVAGDDGQHTGTCIARD
TLVWACHTAYNCAAARPAFMLDHLAAEPAATGAPVPLVALPLPCVFRSAAIAALESLQRPWEVVFTATGMASVLAAVRAG
LGITVLPRSALTPDLKIPAPEEGFPPLPAFSTCIYANDNVNLQALEALTRHLRQQLGTQRA

Specific function: Regulates pectinase gene expression [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788626, Length=294, Percent_Identity=31.6326530612245, Blast_Score=135, Evalue=3e-33,
Organism=Escherichia coli, GI1787589, Length=140, Percent_Identity=40, Blast_Score=81, Evalue=9e-17,
Organism=Escherichia coli, GI1787879, Length=265, Percent_Identity=30.9433962264151, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1787806, Length=266, Percent_Identity=27.0676691729323, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1788748, Length=267, Percent_Identity=28.8389513108614, Blast_Score=74, Evalue=8e-15,
Organism=Escherichia coli, GI1790399, Length=259, Percent_Identity=26.6409266409266, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1786448, Length=123, Percent_Identity=36.5853658536585, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI157672245, Length=148, Percent_Identity=35.1351351351351, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI87081978, Length=204, Percent_Identity=32.843137254902, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1790262, Length=146, Percent_Identity=26.7123287671233, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1789173, Length=122, Percent_Identity=32.7868852459016, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI2367136, Length=119, Percent_Identity=31.9327731092437, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1788887, Length=145, Percent_Identity=34.4827586206897, Blast_Score=65, Evalue=7e-12,
Organism=Escherichia coli, GI1787530, Length=259, Percent_Identity=24.7104247104247, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1788296, Length=234, Percent_Identity=27.3504273504274, Blast_Score=62, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32651; Mature: 32651

Theoretical pI: Translated: 7.00; Mature: 7.00

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MELEIDLLRCFAAVAEEGGFTAAGSRIGLTQSAVSQRIRRLEDRLGRRLLVRTTRTLSLS
CCCHHHHHHHHHHHHHCCCCEECCCCCCCCHHHHHHHHHHHHHHHCCEEEEEEEEEEEEC
TEGEMLLHYAQRMLALHDEALARLRASSIKGALRIGFVDYFGPDAMPETIRQFIRSFPDI
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEEEEHHHCCCCCCHHHHHHHHHHCCCE
HLELHAGLGMELRQLFDHGKLDVLVAGDDGQHTGTCIARDTLVWACHTAYNCAAARPAFM
EEEEECCCCHHHHHHHCCCCEEEEEECCCCCCCCEEEEHHHEEEEHHHHHHHHHCCHHHH
LDHLAAEPAATGAPVPLVALPLPCVFRSAAIAALESLQRPWEVVFTATGMASVLAAVRAG
HHHHHCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHC
LGITVLPRSALTPDLKIPAPEEGFPPLPAFSTCIYANDNVNLQALEALTRHLRQQLGTQR
CCEEEECCCCCCCCCCCCCCCCCCCCCCCHHEEEEECCCCCHHHHHHHHHHHHHHHCCCC
A
C
>Mature Secondary Structure
MELEIDLLRCFAAVAEEGGFTAAGSRIGLTQSAVSQRIRRLEDRLGRRLLVRTTRTLSLS
CCCHHHHHHHHHHHHHCCCCEECCCCCCCCHHHHHHHHHHHHHHHCCEEEEEEEEEEEEC
TEGEMLLHYAQRMLALHDEALARLRASSIKGALRIGFVDYFGPDAMPETIRQFIRSFPDI
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEEEEHHHCCCCCCHHHHHHHHHHCCCE
HLELHAGLGMELRQLFDHGKLDVLVAGDDGQHTGTCIARDTLVWACHTAYNCAAARPAFM
EEEEECCCCHHHHHHHCCCCEEEEEECCCCCCCCEEEEHHHEEEEHHHHHHHHHCCHHHH
LDHLAAEPAATGAPVPLVALPLPCVFRSAAIAALESLQRPWEVVFTATGMASVLAAVRAG
HHHHHCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHC
LGITVLPRSALTPDLKIPAPEEGFPPLPAFSTCIYANDNVNLQALEALTRHLRQQLGTQR
CCEEEECCCCCCCCCCCCCCCCCCCCCCCHHEEEEECCCCCHHHHHHHHHHHHHHHCCCC
A
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8626286 [H]