Click here to switch to the map view.

The map label for this gene is yidD [C]

Identifier: 78224745

GI number: 78224745

Start: 3996648

End: 3996857

Strand: Reverse

Name: yidD [C]

Synonym: Gmet_3562

Alternate gene names: 78224745

Gene position: 3996857-3996648 (Counterclockwise)

Preceding gene: 78224746

Following gene: 78224744

Centisome position: 99.99

GC content: 57.14

Gene sequence:

>210_bases
ATGCTGAAGATTCTCATCAAGATCATCGGCATCTACCAGCGCTACCTCTCGCCCCTCACCGGGCCCACCTGCCGCTTCTA
TCCCTCCTGTTCAACCTATGCCAAGGAATCGCTCATGCGGCACGGCCTTCTCAAAGGGCTGTGGTACAGTGCCGTCCGGA
TCATGAAATGTCATCCGTACCACCCCGGTGGCTACGACCCCGTCAAGTAA

Upstream 100 bases:

>100_bases
TCAACATAATTGCCCGAAGGGGAGCTGACAAGCTCGACTACCAGGGAGTCTGCAAGGAACTGGACCGGGTGGTGGAGCGC
CTTGCGGGCCTCACACGATC

Downstream 100 bases:

>100_bases
CCATCCATCAGGAGCTGACATGGAAAAAAGGGCTTTGATTGCAGTTATCCTCTCTATTGTATTCTTCTACGGGTACTCGG
CCCTGTTCCCCCCGCCGAAG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 69; Mature: 69

Protein sequence:

>69_residues
MLKILIKIIGIYQRYLSPLTGPTCRFYPSCSTYAKESLMRHGLLKGLWYSAVRIMKCHPYHPGGYDPVK

Sequences:

>Translated_69_residues
MLKILIKIIGIYQRYLSPLTGPTCRFYPSCSTYAKESLMRHGLLKGLWYSAVRIMKCHPYHPGGYDPVK
>Mature_69_residues
MLKILIKIIGIYQRYLSPLTGPTCRFYPSCSTYAKESLMRHGLLKGLWYSAVRIMKCHPYHPGGYDPVK

Specific function: Unknown

COG id: COG0759

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0161 family

Homologues:

Organism=Escherichia coli, GI87082322, Length=66, Percent_Identity=56.0606060606061, Blast_Score=88, Evalue=1e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y3562_GEOMG (Q39PQ7)

Other databases:

- EMBL:   CP000148
- RefSeq:   YP_386492.1
- STRING:   Q39PQ7
- GeneID:   3739861
- GenomeReviews:   CP000148_GR
- KEGG:   gme:Gmet_3562
- NMPDR:   fig|269799.3.peg.3530
- eggNOG:   COG0759
- HOGENOM:   HBG634291
- OMA:   HPERYED
- ProtClustDB:   CLSK743207
- BioCyc:   GMET269799:GMET_3562-MONOMER
- HAMAP:   MF_00386
- InterPro:   IPR002696
- ProDom:   PD004225
- TIGRFAMs:   TIGR00278

Pfam domain/function: PF01809 DUF37

EC number: NA

Molecular weight: Translated: 7963; Mature: 7963

Theoretical pI: Translated: 10.03; Mature: 10.03

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.3 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
8.7 %Cys+Met (Translated Protein)
4.3 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
8.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKILIKIIGIYQRYLSPLTGPTCRFYPSCSTYAKESLMRHGLLKGLWYSAVRIMKCHPY
CHHHHHHHHHHHHHHHCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
HPGGYDPVK
CCCCCCCCC
>Mature Secondary Structure
MLKILIKIIGIYQRYLSPLTGPTCRFYPSCSTYAKESLMRHGLLKGLWYSAVRIMKCHPY
CHHHHHHHHHHHHHHHCCCCCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
HPGGYDPVK
CCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA