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The map label for this gene is ybgC [H]

Identifier: 78224739

GI number: 78224739

Start: 3989527

End: 3989940

Strand: Reverse

Name: ybgC [H]

Synonym: Gmet_3556

Alternate gene names: 78224739

Gene position: 3989940-3989527 (Counterclockwise)

Preceding gene: 78224740

Following gene: 78224738

Centisome position: 99.81

GC content: 65.22

Gene sequence:

>414_bases
ATGGGAGGGGAAGGAATGGAGTTTCGCGTCTACTATGAGGACACCGATGCCGGAGGGATTGTCTACCATGCCCGCTACCT
GGGTTTTTTCGAGCGGGGGAGGTGCGAGTTCCTCCGCCGGCGGGGACTGTCGGTGCGGGAGTTGGCCGACGAGGGTGCCG
TCTTCCCGGTAGTGCGGATGGAGGTGGATTTCCGGGCGTCGGCGGTCCTCGATGACCTCCTCCGGGTGGAAACCGAGGTG
CTTGAGGTGGGGAAGGCCACGTTCTCCCTGAGGCAGCGGGTAGTGAGGGCGGAAGACGGAAAGACCCTCGTGGAGGGGCG
CGTCACCCTCGTCTGCGTCCGGCCTGGGATGAAGCCCCGCCGGCTTCCCGAGCAACTCATCGGGGCGCTCAGATCTACGA
ATGGGGCCGGCTAA

Upstream 100 bases:

>100_bases
GGGACCAGAACACCGGCTCGCTCCACAGCGTGGTTCTGAAATTCAAGTAGCAGCGCTAAGGTGCCGCTCATAAAGAGGCC
CCGGGCCTCTTTTTTTTGCC

Downstream 100 bases:

>100_bases
AAGACCGGTAGGGAGACATCACACAATGCTCGGAATTATCCTTAAATTGATTGTCAACGCAGTGGCCCTCTTTGCCGTGG
TCCGCCTGGTTCCCGGCATC

Product: 4-hydroxybenzoyl-CoA thioesterase

Products: NA

Alternate protein names: Acyl-CoA thioesterase [H]

Number of amino acids: Translated: 137; Mature: 136

Protein sequence:

>137_residues
MGGEGMEFRVYYEDTDAGGIVYHARYLGFFERGRCEFLRRRGLSVRELADEGAVFPVVRMEVDFRASAVLDDLLRVETEV
LEVGKATFSLRQRVVRAEDGKTLVEGRVTLVCVRPGMKPRRLPEQLIGALRSTNGAG

Sequences:

>Translated_137_residues
MGGEGMEFRVYYEDTDAGGIVYHARYLGFFERGRCEFLRRRGLSVRELADEGAVFPVVRMEVDFRASAVLDDLLRVETEV
LEVGKATFSLRQRVVRAEDGKTLVEGRVTLVCVRPGMKPRRLPEQLIGALRSTNGAG
>Mature_136_residues
GGEGMEFRVYYEDTDAGGIVYHARYLGFFERGRCEFLRRRGLSVRELADEGAVFPVVRMEVDFRASAVLDDLLRVETEVL
EVGKATFSLRQRVVRAEDGKTLVEGRVTLVCVRPGMKPRRLPEQLIGALRSTNGAG

Specific function: Thioesterase that appears to be involved in phospholipid metabolism. Some specific acyl-ACPs could be physiological substrates. Displays acyl-CoA thioesterase activity on malonyl-CoA in vitro, catalyzing the hydrolysis of the thioester bond [H]

COG id: COG0824

COG function: function code R; Predicted thioesterase

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein; Cytoplasmic side [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 4-hydroxybenzoyl-CoA thioesterase family [H]

Homologues:

Organism=Escherichia coli, GI1786957, Length=125, Percent_Identity=44.8, Blast_Score=111, Evalue=2e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006684
- InterPro:   IPR008272
- InterPro:   IPR006683
- InterPro:   IPR014166 [H]

Pfam domain/function: PF03061 4HBT [H]

EC number: NA

Molecular weight: Translated: 15368; Mature: 15237

Theoretical pI: Translated: 8.20; Mature: 8.20

Prosite motif: PS01328 4HBCOA_THIOESTERASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGGEGMEFRVYYEDTDAGGIVYHARYLGFFERGRCEFLRRRGLSVRELADEGAVFPVVRM
CCCCCCEEEEEEECCCCCCEEEHHHHHHHHHCCHHHHHHHCCCCHHHHHCCCCEEEEEEE
EVDFRASAVLDDLLRVETEVLEVGKATFSLRQRVVRAEDGKTLVEGRVTLVCVRPGMKPR
EECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCEEEEEECCCCCCC
RLPEQLIGALRSTNGAG
CCHHHHHHHHHCCCCCC
>Mature Secondary Structure 
GGEGMEFRVYYEDTDAGGIVYHARYLGFFERGRCEFLRRRGLSVRELADEGAVFPVVRM
CCCCCEEEEEEECCCCCCEEEHHHHHHHHHCCHHHHHHHCCCCHHHHHCCCCEEEEEEE
EVDFRASAVLDDLLRVETEVLEVGKATFSLRQRVVRAEDGKTLVEGRVTLVCVRPGMKPR
EECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCEEEEEECCCCCCC
RLPEQLIGALRSTNGAG
CCHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]