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The map label for this gene is yrdA [H]

Identifier: 78224728

GI number: 78224728

Start: 3977592

End: 3978125

Strand: Direct

Name: yrdA [H]

Synonym: Gmet_3545

Alternate gene names: 78224728

Gene position: 3977592-3978125 (Clockwise)

Preceding gene: 78224727

Following gene: 78224730

Centisome position: 99.5

GC content: 64.61

Gene sequence:

>534_bases
ATGATACGTTCTTTTCAGGGGATGAACCCCCGGATCGACTCCTCCGCCTTCATCGCCGAAACCGCCGTGGTCATCGGCGA
CGTGACCGTGGGGGCCGAAAGCAGCATCTGGTATAACGTGGTGGTCCGGGGAGATGTGAACTTCATCCGGATCGGCGCCC
GGAGCAATATCCAGGACCTCACCATGCTCCACGTGACCCACAAGAAGCACGCCGACGACCCCGGCGCCCCGCTCGTCATC
GGTGACGACGTGACCGTGGGGCACAGCGTCACCCTCCACGGCTGCACCATCGAAAACGGCGCCTTCATCGGGATGCAGGC
CATGGTTATGGACAAGGCGGTGGTGGGGGAAGGGGCGCTGGTGGGTGCCCGGGCCCTCGTCACCGAGGGAACCGTCATCC
CACCCCATACCCTCTGGGTCGGCGCGCCGGCCCGGTACAAGCGGGACCTGACCCCCGACGAGATCGCCTGGCTCAAGCGT
TCGGCCGGCAACTACGTGAGATACTCCCGGGAGTATCTGGACGATACGCCATAG

Upstream 100 bases:

>100_bases
AGCCAAGCGGGCACTGGACCGGATGATCGCCATACCGAGGGACTGAGATGCGGGGACCGGGGACCCGTGATCGGAAAAAT
CCAACCTGTCGAGGTCTATG

Downstream 100 bases:

>100_bases
CACCCGGCCTCCGCAGCCAACAAAAAAGCCGGCATCCCCTCGAGGGGAGCCGGCTTTTTTGTTATCGCAACGCAGGGAAA
CTGGTCAGAATTTGAGGAAC

Product: hexapaptide repeat-containing transferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 177; Mature: 177

Protein sequence:

>177_residues
MIRSFQGMNPRIDSSAFIAETAVVIGDVTVGAESSIWYNVVVRGDVNFIRIGARSNIQDLTMLHVTHKKHADDPGAPLVI
GDDVTVGHSVTLHGCTIENGAFIGMQAMVMDKAVVGEGALVGARALVTEGTVIPPHTLWVGAPARYKRDLTPDEIAWLKR
SAGNYVRYSREYLDDTP

Sequences:

>Translated_177_residues
MIRSFQGMNPRIDSSAFIAETAVVIGDVTVGAESSIWYNVVVRGDVNFIRIGARSNIQDLTMLHVTHKKHADDPGAPLVI
GDDVTVGHSVTLHGCTIENGAFIGMQAMVMDKAVVGEGALVGARALVTEGTVIPPHTLWVGAPARYKRDLTPDEIAWLKR
SAGNYVRYSREYLDDTP
>Mature_177_residues
MIRSFQGMNPRIDSSAFIAETAVVIGDVTVGAESSIWYNVVVRGDVNFIRIGARSNIQDLTMLHVTHKKHADDPGAPLVI
GDDVTVGHSVTLHGCTIENGAFIGMQAMVMDKAVVGEGALVGARALVTEGTVIPPHTLWVGAPARYKRDLTPDEIAWLKR
SAGNYVRYSREYLDDTP

Specific function: Unknown

COG id: COG0663

COG function: function code R; Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gamma-class carbonic anhydrase family [H]

Homologues:

Organism=Escherichia coli, GI87082240, Length=174, Percent_Identity=44.8275862068966, Blast_Score=161, Evalue=2e-41,
Organism=Escherichia coli, GI1787667, Length=164, Percent_Identity=38.4146341463415, Blast_Score=115, Evalue=1e-27,
Organism=Escherichia coli, GI87081681, Length=162, Percent_Identity=34.5679012345679, Blast_Score=99, Evalue=1e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011004 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 19159; Mature: 19159

Theoretical pI: Translated: 6.23; Mature: 6.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIRSFQGMNPRIDSSAFIAETAVVIGDVTVGAESSIWYNVVVRGDVNFIRIGARSNIQDL
CCCCCCCCCCCCCCCEEEEEEEEEEEEEEECCCCCEEEEEEEECCCCEEEECCCCCCCEE
TMLHVTHKKHADDPGAPLVIGDDVTVGHSVTLHGCTIENGAFIGMQAMVMDKAVVGEGAL
EEEEEECCCCCCCCCCCEEEECCEEECCEEEEEEEEECCCEEEEEEEEEHHHHHCCCCCE
VGARALVTEGTVIPPHTLWVGAPARYKRDLTPDEIAWLKRSAGNYVRYSREYLDDTP
ECCEEEEECCCCCCCCEEEECCCHHHCCCCCHHHHHHHHHCCCCCEEEEHHHCCCCC
>Mature Secondary Structure
MIRSFQGMNPRIDSSAFIAETAVVIGDVTVGAESSIWYNVVVRGDVNFIRIGARSNIQDL
CCCCCCCCCCCCCCCEEEEEEEEEEEEEEECCCCCEEEEEEEECCCCEEEECCCCCCCEE
TMLHVTHKKHADDPGAPLVIGDDVTVGHSVTLHGCTIENGAFIGMQAMVMDKAVVGEGAL
EEEEEECCCCCCCCCCCEEEECCEEECCEEEEEEEEECCCEEEEEEEEEHHHHHCCCCCE
VGARALVTEGTVIPPHTLWVGAPARYKRDLTPDEIAWLKRSAGNYVRYSREYLDDTP
ECCEEEEECCCCCCCCEEEECCCHHHCCCCCHHHHHHHHHCCCCCEEEEHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503; 10493123 [H]