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The map label for this gene is yafK [C]

Identifier: 78224670

GI number: 78224670

Start: 3915253

End: 3916278

Strand: Direct

Name: yafK [C]

Synonym: Gmet_3487

Alternate gene names: 78224670

Gene position: 3915253-3916278 (Clockwise)

Preceding gene: 78224669

Following gene: 78224677

Centisome position: 97.94

GC content: 55.56

Gene sequence:

>1026_bases
ATGATTCCAGCAAGGGGTGAGGAGATGAGGGGACCGGAAATCTTTCGCCGTGGACCGTCTGCGGAATCAGGACGGTCTTT
GGCCGATACGGCAACAAAACAAAGCCGGCCGGGCAAACGCCTTAGCTTTTTTCGTATCGGCATCCTGGTAACACCGATGC
TCATGGCGGGATGCGGTCACCTTCAGTCCAAGCCGACCTTTGAAGAAGCGAATGACTTGTTTAATCAGGGAAGCTACCAG
GCCTCGCTGAGCAAATACGAGCAGATTGTCGACCAGCAACCTGCGGCGGGCGACAGGGCTCTCTTCGAGATGGGTATCGT
TTATTCGTACCCGAAGAACGAGCGCAAAGATTATCAGAAATCCCTGGAGTGCTTTCAGCGGGTCATAAAGGATTATCCCG
GGAGCCACTACCGGCAGAACAGTCAGACGATGGCATCGTATATCAATACTGTCCCGGTCAAGGACGCGACGATTGCCACG
CAGCAAACGAGGATCGAGGCCCTCCAGCGCGAGCTCACGGGCAAAGAGGATGAGATCGCTGCCCTGCGGGGAAAGATTGA
AGCGCTTGAAAAAAATGTGTTTGCCTACGCCATCCGGAAGCCATCGCTCGACAAGATCCTGATAGAAAAACAGGCACGAC
GCATGATGCTGATCTCAAAGGGGGCGGTGCTCAAAACCTACAGGATCGCCCTGGGGGGAGACCCCATCGGCCCGAAAGAA
CGGCAAGGCGACAACAAAACCCCGGAAGGAGCCTACACCATCGATGCCAGAAACAGGGATAGCCGTTATCACCGGGCTCT
CCATATCTCCTATCCCAACGAGAGGGACAGGAAGCGCGCCCGGGAACTCGGAGTCTCCCCGGGCGGAAACATCATGATCC
ACGGCATCAAGAATGGTTTCTCGTGGGTTGGAGATGCTCACGCAGGGGTGGACTGGACAAAGGGGTGCATTGCCGTAACG
GACGAGGAAATAGAGGAAATTGACACGTTGGCGCCCAATGGCACCATTGTCGAGATCAGGCCATAG

Upstream 100 bases:

>100_bases
GGCAGGGTCCACGCGCCCTGCCATTTCCTTATCCGGCAGGTGGGTCCGGCCGGACATTTTGAACATACGGACATCAGGCT
CCCGGAACGGGATATTCCTG

Downstream 100 bases:

>100_bases
AAGGCCGCACGGATCATTCCGCAGGGCGACTAGAAATGCTCCCCCTTGGCCTTTTCCGTAACCTTTCTGCTGACGGTGCG
ACGATCCCAGACACTCACCT

Product: ErfK/YbiS/YcfS/YnhG

Products: NA

Alternate protein names: ErfK/YbiS/YcfS/YnhG; Lipoprotein; ErfK/YbiS/YcfS/YnhG-Related Protein; ErfK/YbiS/YcfS/YnhG Protein; Peptidoglycan L D-Transpeptidase Lipoprotein; Protein ERFK

Number of amino acids: Translated: 341; Mature: 341

Protein sequence:

>341_residues
MIPARGEEMRGPEIFRRGPSAESGRSLADTATKQSRPGKRLSFFRIGILVTPMLMAGCGHLQSKPTFEEANDLFNQGSYQ
ASLSKYEQIVDQQPAAGDRALFEMGIVYSYPKNERKDYQKSLECFQRVIKDYPGSHYRQNSQTMASYINTVPVKDATIAT
QQTRIEALQRELTGKEDEIAALRGKIEALEKNVFAYAIRKPSLDKILIEKQARRMMLISKGAVLKTYRIALGGDPIGPKE
RQGDNKTPEGAYTIDARNRDSRYHRALHISYPNERDRKRARELGVSPGGNIMIHGIKNGFSWVGDAHAGVDWTKGCIAVT
DEEIEEIDTLAPNGTIVEIRP

Sequences:

>Translated_341_residues
MIPARGEEMRGPEIFRRGPSAESGRSLADTATKQSRPGKRLSFFRIGILVTPMLMAGCGHLQSKPTFEEANDLFNQGSYQ
ASLSKYEQIVDQQPAAGDRALFEMGIVYSYPKNERKDYQKSLECFQRVIKDYPGSHYRQNSQTMASYINTVPVKDATIAT
QQTRIEALQRELTGKEDEIAALRGKIEALEKNVFAYAIRKPSLDKILIEKQARRMMLISKGAVLKTYRIALGGDPIGPKE
RQGDNKTPEGAYTIDARNRDSRYHRALHISYPNERDRKRARELGVSPGGNIMIHGIKNGFSWVGDAHAGVDWTKGCIAVT
DEEIEEIDTLAPNGTIVEIRP
>Mature_341_residues
MIPARGEEMRGPEIFRRGPSAESGRSLADTATKQSRPGKRLSFFRIGILVTPMLMAGCGHLQSKPTFEEANDLFNQGSYQ
ASLSKYEQIVDQQPAAGDRALFEMGIVYSYPKNERKDYQKSLECFQRVIKDYPGSHYRQNSQTMASYINTVPVKDATIAT
QQTRIEALQRELTGKEDEIAALRGKIEALEKNVFAYAIRKPSLDKILIEKQARRMMLISKGAVLKTYRIALGGDPIGPKE
RQGDNKTPEGAYTIDARNRDSRYHRALHISYPNERDRKRARELGVSPGGNIMIHGIKNGFSWVGDAHAGVDWTKGCIAVT
DEEIEEIDTLAPNGTIVEIRP

Specific function: Unknown

COG id: COG3034

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786418, Length=143, Percent_Identity=34.965034965035, Blast_Score=68, Evalue=8e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 38176; Mature: 38176

Theoretical pI: Translated: 9.46; Mature: 9.46

Prosite motif: PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIPARGEEMRGPEIFRRGPSAESGRSLADTATKQSRPGKRLSFFRIGILVTPMLMAGCGH
CCCCCCCCCCCHHHHHCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCC
LQSKPTFEEANDLFNQGSYQASLSKYEQIVDQQPAAGDRALFEMGIVYSYPKNERKDYQK
CCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHHCCEEECCCCHHHHHHH
SLECFQRVIKDYPGSHYRQNSQTMASYINTVPVKDATIATQQTRIEALQRELTGKEDEIA
HHHHHHHHHHHCCCCHHHCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHH
ALRGKIEALEKNVFAYAIRKPSLDKILIEKQARRMMLISKGAVLKTYRIALGGDPIGPKE
HHHHHHHHHHHHHHEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCC
RQGDNKTPEGAYTIDARNRDSRYHRALHISYPNERDRKRARELGVSPGGNIMIHGIKNGF
CCCCCCCCCCCEEEECCCCCCCEEEEEEECCCCHHHHHHHHHCCCCCCCCEEEEEECCCC
SWVGDAHAGVDWTKGCIAVTDEEIEEIDTLAPNGTIVEIRP
CCCCCCCCCCCCCCCEEEECHHHHHHHHHCCCCCEEEEECC
>Mature Secondary Structure
MIPARGEEMRGPEIFRRGPSAESGRSLADTATKQSRPGKRLSFFRIGILVTPMLMAGCGH
CCCCCCCCCCCHHHHHCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCC
LQSKPTFEEANDLFNQGSYQASLSKYEQIVDQQPAAGDRALFEMGIVYSYPKNERKDYQK
CCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCHHHHHHCCEEECCCCHHHHHHH
SLECFQRVIKDYPGSHYRQNSQTMASYINTVPVKDATIATQQTRIEALQRELTGKEDEIA
HHHHHHHHHHHCCCCHHHCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHH
ALRGKIEALEKNVFAYAIRKPSLDKILIEKQARRMMLISKGAVLKTYRIALGGDPIGPKE
HHHHHHHHHHHHHHEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCC
RQGDNKTPEGAYTIDARNRDSRYHRALHISYPNERDRKRARELGVSPGGNIMIHGIKNGF
CCCCCCCCCCCEEEECCCCCCCEEEEEEECCCCHHHHHHHHHCCCCCCCCEEEEEECCCC
SWVGDAHAGVDWTKGCIAVTDEEIEEIDTLAPNGTIVEIRP
CCCCCCCCCCCCCCCEEEECHHHHHHHHHCCCCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA