Click here to switch to the map view.

The map label for this gene is ytfE [C]

Identifier: 78224677

GI number: 78224677

Start: 3923607

End: 3924356

Strand: Direct

Name: ytfE [C]

Synonym: Gmet_3494

Alternate gene names: 78224677

Gene position: 3923607-3924356 (Clockwise)

Preceding gene: 78224670

Following gene: 78224678

Centisome position: 98.15

GC content: 60.8

Gene sequence:

>750_bases
ATGATGGAAGACACAAAGACGCAGCAGGAAGATGCAGGCGCCGTCAGGACCATCGGTGGGTTCGTGGCCGAGGATTACCG
GACGGCGGAGGTGTTCGAGCGGCACGGGATCGACTTCTGCTGCGGCGGAAATGTTCCCCTTGATACTGCCTGCCGACAGA
AAGGGATCGACCCGGCCGTTATCCTGGACGAGATCGAAGCAGCGAAGAGGGAACCGATGGAGCGGAGCCAGAACTTTGCG
GTGTGGGAACTCTCGTTCCTGGCCGACTACATCGTTGCCGTCCACCATGCCTACATCAAGGACAATGCCGGGCAGATCGT
CTTGTACGCCCGCAAGGTTGCCGAGGTCCATGGCGGCCGCCATGCCGAAGTGAAGGAGATCGCCGCGATCTTCGAGAAGG
TCGCCGCCGATCTGGCAACCCATCTGCGCGAGGAGGAGGAAATCTTCTTTCCGGCCGTCAAGCGGGCCGATGCGGCGAAA
AAAGCGGGGAAGAGGCCGGAACGGCAGGATATCGACGCCATCCGGGGGGATCTGGCAAGGCTCCGCCGGGAGCACGAAGA
GGTGGGGGATGCGATTCACACCATCCGCCGCCTTGCCGGGGATTTCGCGATCCCCGACGACGCCTGCAACACCTACGCGG
TCACCTACCGGAAACTGAAGGAGTTCGAGGACGACCTCCACAAGCACGTGCACCTAGAAAACAACATCCTTTTTCTGAAC
GCGGAAAGGGATCTGGGGGACTATGACTGA

Upstream 100 bases:

>100_bases
TGCCTGCTTCCGCCGGGAAGAACAAGCAGGTGAAGGTGGCTTGACCTCGCAGGGGAATGCGATAACGTAGGTGTGTGCAG
CAACTATCCAAGGGGGGACG

Downstream 100 bases:

>100_bases
GAAAAAGCGCGGCAAGGGCGGCTTACGGGTAGATCCGTTCGAGCTGAAACTGGCACGGGAGGTGGAGCGGCTCCTGTTCC
CGAAGAGTTCGCCGGTCTGC

Product: hemerythrin HHE cation binding region

Products: NA

Alternate protein names: RCMNS [H]

Number of amino acids: Translated: 249; Mature: 249

Protein sequence:

>249_residues
MMEDTKTQQEDAGAVRTIGGFVAEDYRTAEVFERHGIDFCCGGNVPLDTACRQKGIDPAVILDEIEAAKREPMERSQNFA
VWELSFLADYIVAVHHAYIKDNAGQIVLYARKVAEVHGGRHAEVKEIAAIFEKVAADLATHLREEEEIFFPAVKRADAAK
KAGKRPERQDIDAIRGDLARLRREHEEVGDAIHTIRRLAGDFAIPDDACNTYAVTYRKLKEFEDDLHKHVHLENNILFLN
AERDLGDYD

Sequences:

>Translated_249_residues
MMEDTKTQQEDAGAVRTIGGFVAEDYRTAEVFERHGIDFCCGGNVPLDTACRQKGIDPAVILDEIEAAKREPMERSQNFA
VWELSFLADYIVAVHHAYIKDNAGQIVLYARKVAEVHGGRHAEVKEIAAIFEKVAADLATHLREEEEIFFPAVKRADAAK
KAGKRPERQDIDAIRGDLARLRREHEEVGDAIHTIRRLAGDFAIPDDACNTYAVTYRKLKEFEDDLHKHVHLENNILFLN
AERDLGDYD
>Mature_249_residues
MMEDTKTQQEDAGAVRTIGGFVAEDYRTAEVFERHGIDFCCGGNVPLDTACRQKGIDPAVILDEIEAAKREPMERSQNFA
VWELSFLADYIVAVHHAYIKDNAGQIVLYARKVAEVHGGRHAEVKEIAAIFEKVAADLATHLREEEEIFFPAVKRADAAK
KAGKRPERQDIDAIRGDLARLRREHEEVGDAIHTIRRLAGDFAIPDDACNTYAVTYRKLKEFEDDLHKHVHLENNILFLN
AERDLGDYD

Specific function: Involved in anaerobic NO protection [H]

COG id: COG2846

COG function: function code D; Regulator of cell morphogenesis and NO signaling

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1790654, Length=226, Percent_Identity=26.5486725663717, Blast_Score=111, Evalue=4e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007500
- InterPro:   IPR019903
- InterPro:   IPR012312 [H]

Pfam domain/function: PF01814 Hemerythrin; PF04405 ScdA_N [H]

EC number: NA

Molecular weight: Translated: 28129; Mature: 28129

Theoretical pI: Translated: 5.03; Mature: 5.03

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMEDTKTQQEDAGAVRTIGGFVAEDYRTAEVFERHGIDFCCGGNVPLDTACRQKGIDPAV
CCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHCCCCHHH
ILDEIEAAKREPMERSQNFAVWELSFLADYIVAVHHAYIKDNAGQIVLYARKVAEVHGGR
HHHHHHHHHCCHHHHCCCCEEEHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHCCC
HAEVKEIAAIFEKVAADLATHLREEEEIFFPAVKRADAAKKAGKRPERQDIDAIRGDLAR
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
LRREHEEVGDAIHTIRRLAGDFAIPDDACNTYAVTYRKLKEFEDDLHKHVHLENNILFLN
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHEEECCCEEEEE
AERDLGDYD
CCCCCCCCC
>Mature Secondary Structure
MMEDTKTQQEDAGAVRTIGGFVAEDYRTAEVFERHGIDFCCGGNVPLDTACRQKGIDPAV
CCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHCCCCHHH
ILDEIEAAKREPMERSQNFAVWELSFLADYIVAVHHAYIKDNAGQIVLYARKVAEVHGGR
HHHHHHHHHCCHHHHCCCCEEEHHHHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHCCC
HAEVKEIAAIFEKVAADLATHLREEEEIFFPAVKRADAAKKAGKRPERQDIDAIRGDLAR
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
LRREHEEVGDAIHTIRRLAGDFAIPDDACNTYAVTYRKLKEFEDDLHKHVHLENNILFLN
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHEEECCCEEEEE
AERDLGDYD
CCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA