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The map label for this gene is ylmD [H]

Identifier: 78224624

GI number: 78224624

Start: 3855808

End: 3856608

Strand: Reverse

Name: ylmD [H]

Synonym: Gmet_3434

Alternate gene names: 78224624

Gene position: 3856608-3855808 (Counterclockwise)

Preceding gene: 78224625

Following gene: 78224623

Centisome position: 96.48

GC content: 67.04

Gene sequence:

>801_bases
ATGGAGATGAAACGAGCCGACAAGGTTCACTATCTGGAGCCGGAGCTCCTGACCGCCGCCGGGGCATCGTTCCACGGCTT
TACCTCCCGCCACGAGGGGGTGTCGCGCCCTCCGTACAACTCCCTCAACCTGGGGGTCGGCACCAACGACTCGCCCCACT
CCGTTGAGGGGAACCGGAGCCTCCTGTCCCGGGCCTTCGGGGTGGAGGCGGGGCGGCTTGTGACCGTGACCCAGGTCCAC
GGCACTGACCTCCTGGTGATCGATTCCCCCAACCCGGACTACGCCTACTTCCAGAAGCTGGAAGCCGACGGCATCATCAC
CAACCAGCCGGGCGTGATGATCGGGGTCTGCGTGGCCGACTGCGTGCCGGTGCTCCTCCTGGACCCGGTTAAAGGGGTTG
CGGCTGCGCTTCACGCAGGGTGGAAGGGAACCGCGGCCGGAATCTGCCGCAAGGGGGTGGATGCCTTTGTCAGCCTCTTC
GGTTCAGAGCCCCGGGACATCCTGGCGGCCGTGGGGCCCGGCATCGGTCCCTGTTGCTACGAGGTGGACACGCCGGTGGC
CGAGGCGTTCCGGGCCGGGGGGCATGACTGGGACGCGGTCGCCACCATCAAGGAGATGGCCCGGTGGCAGTTGGACCTGG
TCCGGGCCAATGCCCTGCAGCTGGGGGCAGCCGGCATCCCCGAACGGAACATCGAGACGGCGCCCCAGTGTGTTTCGTGT
GCCCCGGAGTTCTTCTTCTCCCACCGCCGCGACAGCGGGGAGACGGGACGGCAGATGGGCTTCATCATGTTGAAGGGGTA
A

Upstream 100 bases:

>100_bases
TCCACCCGGCCAGCGGCTCCTACGTCGAATTCGACACGGAGCTGCCGGACGATATGGCCCGAATCATTACCTATCTTGAA
CAGCAAGGAGCATAGAACTT

Downstream 100 bases:

>100_bases
ACCGATGAAATTCGCCATTTCCGACCAGATCCGCTCGGTCCACGCACCCCCCATCACCGAGGTGAAGGGGTGGCTCGCCA
GCCGGGAGCCCGATCCAGGG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 266; Mature: 266

Protein sequence:

>266_residues
MEMKRADKVHYLEPELLTAAGASFHGFTSRHEGVSRPPYNSLNLGVGTNDSPHSVEGNRSLLSRAFGVEAGRLVTVTQVH
GTDLLVIDSPNPDYAYFQKLEADGIITNQPGVMIGVCVADCVPVLLLDPVKGVAAALHAGWKGTAAGICRKGVDAFVSLF
GSEPRDILAAVGPGIGPCCYEVDTPVAEAFRAGGHDWDAVATIKEMARWQLDLVRANALQLGAAGIPERNIETAPQCVSC
APEFFFSHRRDSGETGRQMGFIMLKG

Sequences:

>Translated_266_residues
MEMKRADKVHYLEPELLTAAGASFHGFTSRHEGVSRPPYNSLNLGVGTNDSPHSVEGNRSLLSRAFGVEAGRLVTVTQVH
GTDLLVIDSPNPDYAYFQKLEADGIITNQPGVMIGVCVADCVPVLLLDPVKGVAAALHAGWKGTAAGICRKGVDAFVSLF
GSEPRDILAAVGPGIGPCCYEVDTPVAEAFRAGGHDWDAVATIKEMARWQLDLVRANALQLGAAGIPERNIETAPQCVSC
APEFFFSHRRDSGETGRQMGFIMLKG
>Mature_266_residues
MEMKRADKVHYLEPELLTAAGASFHGFTSRHEGVSRPPYNSLNLGVGTNDSPHSVEGNRSLLSRAFGVEAGRLVTVTQVH
GTDLLVIDSPNPDYAYFQKLEADGIITNQPGVMIGVCVADCVPVLLLDPVKGVAAALHAGWKGTAAGICRKGVDAFVSLF
GSEPRDILAAVGPGIGPCCYEVDTPVAEAFRAGGHDWDAVATIKEMARWQLDLVRANALQLGAAGIPERNIETAPQCVSC
APEFFFSHRRDSGETGRQMGFIMLKG

Specific function: Unknown

COG id: COG1496

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0124 family [H]

Homologues:

Organism=Homo sapiens, GI190194374, Length=249, Percent_Identity=34.136546184739, Blast_Score=137, Evalue=1e-32,
Organism=Homo sapiens, GI190194372, Length=249, Percent_Identity=34.136546184739, Blast_Score=137, Evalue=1e-32,
Organism=Escherichia coli, GI1788945, Length=237, Percent_Identity=37.5527426160338, Blast_Score=126, Evalue=1e-30,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003730
- InterPro:   IPR011324 [H]

Pfam domain/function: PF02578 Cu-oxidase_4 [H]

EC number: NA

Molecular weight: Translated: 28346; Mature: 28346

Theoretical pI: Translated: 5.84; Mature: 5.84

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEMKRADKVHYLEPELLTAAGASFHGFTSRHEGVSRPPYNSLNLGVGTNDSPHSVEGNRS
CCCCCCCCCEECCCHHHHHCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCHH
LLSRAFGVEAGRLVTVTQVHGTDLLVIDSPNPDYAYFQKLEADGIITNQPGVMIGVCVAD
HHHHHHCCCCCCEEEEEEECCCEEEEEECCCCCHHHHHHHCCCCEEECCCCCEEEHHHHH
CVPVLLLDPVKGVAAALHAGWKGTAAGICRKGVDAFVSLFGSEPRDILAAVGPGIGPCCY
HHHHHHHCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCEEE
EVDTPVAEAFRAGGHDWDAVATIKEMARWQLDLVRANALQLGAAGIPERNIETAPQCVSC
ECCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHH
APEFFFSHRRDSGETGRQMGFIMLKG
CHHHHHHHCCCCCCCCCEEEEEEECC
>Mature Secondary Structure
MEMKRADKVHYLEPELLTAAGASFHGFTSRHEGVSRPPYNSLNLGVGTNDSPHSVEGNRS
CCCCCCCCCEECCCHHHHHCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCHH
LLSRAFGVEAGRLVTVTQVHGTDLLVIDSPNPDYAYFQKLEADGIITNQPGVMIGVCVAD
HHHHHHCCCCCCEEEEEEECCCEEEEEECCCCCHHHHHHHCCCCEEECCCCCEEEHHHHH
CVPVLLLDPVKGVAAALHAGWKGTAAGICRKGVDAFVSLFGSEPRDILAAVGPGIGPCCY
HHHHHHHCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCEEE
EVDTPVAEAFRAGGHDWDAVATIKEMARWQLDLVRANALQLGAAGIPERNIETAPQCVSC
ECCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHH
APEFFFSHRRDSGETGRQMGFIMLKG
CHHHHHHHCCCCCCCCCEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]